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Articles

Microsatellite and inter-microsatellite markers linked with resistance to vascular streak dieback in cocoa (Theobroma cacao L.)

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Pages 294-302 | Accepted 02 Oct 2019, Published online: 20 Nov 2019

References

  • Abraham, C.S. (1981). Vascular streak dieback of cocoa in India. Indian Arecanut Spices and Cocoa Journal, 4, 119–120.
  • Abraham, K., James, D., Mallika, V.K., & Nair, R.V. (2002, November 29–30). Variation in symptoms of vascular streak dieback of cocoa in Kerala. In R. Bhat, D. Balasimha, & S. Jayasekhar (Eds.), Extended summaries, National Seminar on Technologies for Enhancing Productivity of Cocoa (pp. 95–97). Vittal, Karnataka State, India: Central Plantation Crops Research Institute.
  • Argout, X., Salse, J., Aury, J.-M., Guiltinan, M.J., Droc, G., Gouzy, J., … Lanaud, C. (2011). The genome of Theobroma cacao. Nature Genetics, 43, 101–108. doi:10.1038/ng.736
  • Asman, A., Amin, N., Rosmana, A., & Abdullah, T. (2018). Endophytic fungi associated with cocoa branch and their potential for biocontrol vascular streak dieback disease on cacao seedling. IOP Conference Series: Earth and Environmental Science, 157, 012039. doi:10.1088/1755-1315/157/1/012039
  • Bhattacharjee, R., Kolesnikova-Allen, M., Aikpokpodion, P., Taiwo, S., & Ingelbrecht, I. (2004). An improved semiautomated rapid method of extracting genomic DNA for molecular marker analysis in cocoa, Theobroma cacao L. Plant Molecular Biology Reporter, 22, 435a–435h. doi:10.1007/BF02772686
  • Bornet, B., & Branchard, M. (2001). Nonanchored inter simple sequence repeat (ISSR) markers: Reproducible and specific tools for genome fingerprinting. Plant Molecular Biology Reporter, 19, 209–215. doi:10.1007/BF02772892
  • Borrone, J.W., Brown, J.S., Kuhn, D.N., Motamayor, J.C., & Schnell, R.J. (2007). Microsatellite markers developed from Theobroma cacao L. expressed sequence tags. Molecular Ecology Notes, 7, 236–239. doi:10.1111/j.1471-8286.2006.01561.x
  • Brown, J.S., Sautter, R.T., Olano, C.T., Borrone, J.W., Kuhn, D.N., Motamayor, J.C., & Schnell, R.J. (2008). A composite linkage map from three crosses between commercial clones of cacao, Theobroma cacao L. Tropical Plant Biology, 1, 120–130. doi:10.1007/s12042-008-9011-4
  • Brown, J.S., Schnell, R.J., Motamayor, J.C., Lopes, U., Kuhn, D.N., & Borrone, J.W. (2005). Resistance gene mapping for witches’ broom disease in Theobroma cacao L. in an F2 population using SSR markers and candidate genes. Journal of the American Society for Horticultural Science, 130, 366–373. doi:10.21273/JASHS.130.3.366
  • Butler, D.R., & Umaharan, P. (2005). Working with cocoa germplasm. In: F. Flood & R. Murphy (Eds.), Cocoa Futures: A source book of some important issues confronting the cocoa industry (pp. 54–64). Chinchina, Colombia: CABI Commodities and USDA.
  • Chandramohan, R., & Kaveriappa, K.M. (1982). Occurrence and distribution of cocoa disease in southern India. In Proc. 8th International Cocoa Research Conference (pp. 445–450), 18–23 October 1981. Cartagena, Columbia.
  • Charters, Y.M., & Wilkinson, M.J. (2000). The use of self-pollinated progenies as ‘in-groups’ for the genetic characterization of cocoa germplasm. Theoretical and Applied Genetics, 100, 160–166. doi:10.1007/PL00002903
  • Crouzillat, D., Lerceteau, E., Petiard, V., Morera, J., Rodriguez, H., Walker, D., … Fritz, P. (1996). Theobroma cacao L.: A genetic linkage map and quantitative trait loci analysis. Theoretical and Applied Genetics, 93, 205–214. doi:10.1007/BF00225747
  • Cryer, N.C., Fenn, M.G.E., Turnbull, C.J., & Wilkinson, M.J. (2006). Allelic size standards and reference genotypes to unify international cocoa (Theobroma cacao L.) microsatellite data. Genetic Resources and Crop Evolution, 53, 1643–1652. doi:10.1007/s10722-005-1286-9
  • Doyle, J.J., & Doyle, J.L. (1987). A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochemical Bulletin, 19, 11–15.
  • Efron, Y. (2000). Factors affecting jorquette height in orthotropic buddings. INGENIC Newsletter, 5, 11–15.
  • Efron, Y., Epaina, P., & Marfu, J. (2005). Breeding strategies to improve cocoa production in Papua New Guinea. In F. Bekele, M.J. End, & A.B. Eskes (Eds.), Proc. 4th INGENIC Workshop on Cocoa Breeding for Improved Production Systems (pp. 12–32), 19–21 October 2003. Accra, Ghana: INGENIC and Ghana Cocoa Board.
  • End, M.J., Eskes, A.B., Lee, M.T., & Lookwood, G. (1994, October 18–19). Cocoa breeding strategies. In M.J. End, A.B. Eskes, M.T. Lee, & G. Lookwood (Eds.), Proc. International Workshop on Cocoa Breeding Strategies (pp. 192). Kuala Lumpur, Malaysia: INGENIC.
  • Epaina, P. (2012). Identification of molecular markers and quantitative trait loci linked to resistance to vascular streak dieback and Phytophthora pod rot of cocoa (Theobroma cacao L.) (Ph. D. Thesis) (pp. 435). University of Sydney, Sydney.
  • Fouet, O., Allegre, M., Argout, X., Jeanneau, M., Lemainque, A., Pavek, S., … Lanaud, C. (2011). Structural characterization and mapping of functional EST-SSR markers in Theobroma cacao. Tree Genetics and Genomes, 7, 799–817. doi:10.1007/s11295-011-0375-5
  • Giustina, L.D., Luz, L.N., Vieira, F.S., Rossi, F.S., Soares-Lopes, C.R., Pereira, T.N., & Rossi, A.A. (2014). Population structure and genetic diversity in natural populations of Theobroma speciosum Willd. Ex Spreng (Malvaceae). Genetics and Molecular Research, 13, 3510–3519. doi:10.4238/2014.February.14.5
  • Guest, D.I., & Keane, P.J. (2018). Cocoa diseases: Vascular streak dieback. In: P. Umaharan (Ed.), Achieving Sustainable Cultivation of Cocoa (pp. 1–15). Cambridge: Burleigh Dodds Science Publishing. (ISBN: 978 1 78676 168 2).
  • Hardham, A.R., Jones, D.A., & Takemoto, D. (2007). Cytoskeleton and cell wall function in penetration resistance. Current Opinion in Plant Biology, 10, 342–348. doi:10.1016/j.pbi.2007.05.001
  • Hebbar, P.K. (2007). Cacao diseases: A global perspective from an industry point of view. Phytopathology, 97, 1658–1663. doi:10.1094/PHYTO-97-12-1658
  • Iwaro, A.D., Sreenivasan, T.N., Butler, D.R., & Umaharan, P. (1998,February 1–6). Rapid screening for Phytophthora pod rot resistance by means of detached pod inoculation. In A.B. Eskes, J.M.M. Engels, & R.A. Lass (Eds.), Working Procedures for Cocoa Germplasm Evaluation and Selection, Proc. CFC/ICCO/IPGRI Project Workshop (pp. 109–113). Montpellier, France: IPGRI.
  • Ji, K., Zhang, D., Motilal, L.A., Boccara, M., Lachenaud, P., & Meinhardt, L.W. (2013). Genetic diversity and parentage in farmer varieties of cacao (Theobroma cacao L.) from Honduras and Nicaragua as revealed by single nucleotide polymorphism (SNP) markers. Genetic Resources and Crop Evolution, 60, 441–453. doi:10.1007/s10722-012-9847-1
  • Keane, P.J., Flentje, N.T., & Lamb, K.P. (1972). Investigation of vascular streak dieback of cocoa in Papua New Guinea. Australian Journal of Biological Sciences, 25, 553–564. doi:10.1071/BI9720553
  • Keane, P.J., & Prior, C. (1992). Biology of vascular streak dieback of cocoa. In: P.J. Keane & C.A.J. Putter (Eds.), Cocoa pest and disease management in south-eastern Asia and Australia (pp. 75–84). Rome: FAO Plant Production and Protection paper.
  • Kuhn, D.N., Heath, M., Wisser, R.J., Meerow, A., Brown, J.S., Lopes, U., & Schnell, R.J. (2003). Resistance gene homologues in Theobroma cacao as useful genetic markers. Theoretical and Applied Genetics, 107, 191–202. doi:10.1007/s00122-003-1239-7
  • Lanaud, C. (1986). Genetic studies of Theobroma cacao L. with the help of enzymatic markers. II. Study of polymorphism of 6 enzymatic systems. Café Cacao Thé, 30, 271–280.
  • Lanaud, C., Fouet, O., Clément, D., Boccara, M., Risterucci, A.M., Surujdeo-Maharaj, S., … Argout, X. (2009). A meta-QTL analysis of disease resistance traits of Theobroma cacao L. Molecular Breeding, 24, 361–374. doi:10.1007/s11032-009-9297-4
  • Lanaud, C., Risterucci, A.M., Pieretti, I., Falque, M., Bouet, A., & Lagoda, P.J.L. (1999). Isolation and characterization of microsatellites in Theobroma cacao L. Molecular Ecology, 8, 2141–2152. doi:10.1046/j.1365-294x.1999.00802.x
  • Lanaud, C., Risterucci, A.M., Pieretti, I., N’Goran, J.A.K., & Fargeas, D. (2004). Characterization and genetic mapping of resistance and defence gene analogs in cocoa (Theobroma cacao L.). Molecular Breeding, 13, 211–227. doi:10.1023/B:MOLB.0000022515.23880.1b
  • Lass, T. (2004). Balancing cocoa production and consumption. In: J. Flood & R. Murphy (Eds.), Cocoa Futures: A source book of some important issues confronting the cocoa industry (pp. 8–16). Chinchiná, Colombia: CABI-Federacafe, USDA.
  • Lerceteau, E., Robert, T., Pétiard, V., & Crouzillat, D. (1997). Evaluation of the extent of genetic variability among Theobroma cacao accessions using RAPD and RFLP markers. Theoretical and Applied Genetics, 95, 10–19. doi:10.1007/s001220050527
  • Lima, L.S., Gramacho, K.P., Carels, N., Novais, R., Gaiotto, F.A., Lopes, U.V., … Micheli, F. (2009). Single nucleotide polymorphisms from Theobroma cacao expressed sequence tags associated with witches’ broom disease in cacao. Genetics and Molecular Research, 8, 799–808.
  • Lima, L.S., Gramacho, K.P., Pires, J.L., Clement, D., Lopes, U.V., Carels, N., … Micheli, F. (2010). Development, characterization, validation, and mapping of SSRs derived from Theobroma cacao L. - Moniliophthora perniciosa interaction ESTs. Tree Genetics and Genomes, 6, 663–676. doi:10.1007/s11295-010-0282-1
  • Livingstone III, D.S., Freeman, B., Motamayor, J.C., Schnell, R.J., Royaert, S., Takrama, J., … Kuhn, D.N. (2012). Optimization of a SNP assay for genotyping Theobroma cacao under field conditions. Molecular Breeding, 30, 33–52. doi:10.1007/s11032-011-9596-4
  • Livingstone III, D.S., Motamayor, J.C., Schnell, R.J., Cariaga, K., Freeman, B., Meerow, A.W., … Kuhn, D.N. (2011). Development of single nucleotide polymorphism markers in Theobroma cacao and comparison to simple sequence repeat markers for genotyping of Cameroon clones. Molecular Breeding, 27, 93–106. doi:10.1007/s11032-010-9416-2
  • Lockwood, G., & Pang, J.T.Y. (1993). Utilization of cacao germplasm in breeding for yield. In Proc. International Workshop on Conservation, Characterization, and Utilization of Cocoa Genetic Resources of the 21st Century (pp. 198–214), 13–17 September 1992. West Indies University Cocoa Research Unit, St. Augustine, Trinidad.
  • López, C.M.R., Wetten, A.C., & Wilkinson, M.J. (2004). Detection and quantification of in vitro culture induced chimerism using simple sequence repeat (SSR) analysis in Theobroma cacao (L.). Theoretical and Applied Genetics, 110, 157–166. doi:10.1007/s00122-004-1823-5
  • Mallika, V.K., Nair, R.V., Abraham, K., Prasannakumari Amma, S., & Namboothiri, R. (2002, November 29–30). Field evaluation of VSD tolerant hybrids in the early years of bearing. In R. Bhat, D. Balasimha, & S. Jayasekhar (Eds.), Extended Summaries, National Seminar on Technologies for Enhancing Productivity of Cocoa (pp. 100–101). Vittal, Karnataka State, India: Central Plantation Crops Research Institute.
  • Marfu, J., Efron, Y., & Epaina, P. (2004, March 28–31). Evaluation of resistance to vascular streak dieback in Papua New Guinea. In Global approaches to cocoa germplasm utilization and conservation: Final Report of the CFC/ICCO/IPGRI Project 1998–2004 and Proceedings of the Closing Workshop, Reading, UK (pp. 187–189).
  • Minimol, J.S., & Prasannakumari Amma, S. (2013). Self incompatibility assessment in vascular streak dieback (VSD) disease resistant hybrids of cocoa. The Asian Journal of Horticulture, 8, 114–117.
  • Nyassé, S., Cilas, C., Herail, C., & Blaha, G. (1995). Leaf inoculation as an early screening test for cocoa (Theobroma cacao L.) resistance to Phytophthora black pod disease. Crop Protection, 14, 657–663. doi:10.1016/0261-2194(95)00054-2
  • Obando, E.M.A. (2009). Genetic characterization of Theobroma cacao L. in Nicaragua (M. Sc. Thesis) (pp. 48). University of Helsinki.
  • Perry, M.D., Davey, M.R., Power, J.B., Lowe, K.C., Bligh, H.F.J., Roach, P.S., & Jones, C. (1998). DNA isolation and AFLP™ genetic fingerprinting of Theobroma cacao (L.). Plant Molecular Biology Reporter, 16, 49–59. doi:10.1023/A:1007468624596
  • Prasannakumari Amma, S. (2013, July 19). Cocoa hybrids. In Minutes of the 35th Zonal Research and Extension Advisory Committee meeting of central zone of Kerala state (pp.5). Pattambi, Kerala, India: Regional Agricultural Research Station.
  • Pugh, T., Fouet, O., Risterucci, A.M., Brottier, P., Abouladze, M., Deletrez, C., … Lanaud, C. (2004). A new cacao linkage map based on codominant markers: Development and integration of 201 new microsatellite markers. Theoretical and Applied Genetics, 108, 1151–1161. doi:10.1007/s00122-003-1533-4
  • Reddy, M.P., Sarla, N., & Siddiq, E.A. (2002). Inter simple sequence repeat (ISSR) polymorphism and its application in plant breeding. Euphytica, 128, 9–17. doi:10.1023/A:1020691618797
  • Rehem, B.C., Almeida, A.A.F., Corrêa, R.X., Gesteira, A.S., Yamada, M.M., & Valle, R.R. (2010). Genetic mapping of Theobroma cacao (Malvaceae) seedlings of the Parinari series, carriers of the lethal gene Luteus-Pa. Genetics and Molecular Research, 9, 1775–1784. doi:10.4238/vol9-3gmr889
  • Rogers, S.O., & Benedich, A.J. (1985). Extraction of DNA from milligram amounts of fresh, herbarium and mummified plant tissues. Plant Molecular Biology, 5, 69–76. doi:10.1007/BF00020088
  • Samuels, G.J., Ismaiel, A., Rosmana, A., Junaid, M., Guest, D., Mcmahon, P., … Cubeta, M.A. (2012). Vascular streak dieback of cacao in Southeast Asia and Melanesia: In planta detection of the pathogen and a new taxonomy. Fungal Biology, 116, 11–23. doi:10.1016/j.funbio.2011.07.009
  • Talbot, P.H.B., & Keane, P.J. (1971). Oncobasidium, a new genus of tulasnelloid fungi. Australian Journal of Botany, 19, 203–206. doi:10.1071/BT9710203
  • Tan, G.Y., & Tan, W.K. (1988). Genetic variation in resistance to vascular-streak dieback in cocoa (Theobroma cacao L.). Theoretical and Applied Genetics, 75, 761–766. doi:10.1007/BF00265602
  • Tautz, D. (1989). Hypervariability of simple sequences as a general source for polymorphic DNA markers. Nucleic Acids Research, 17, 6463–6471. doi:10.1093/nar/17.16.6463
  • Thondaiman, V., Rajamani, K., Senthil, N., Shoba, N., & Joel, A.J. (2013). Genetic diversity in cocoa (Theobroma cacao L.) plus trees in Tamil Nadu by simple sequence repeat (SSR) markers. African Journal of Biotechnology, 12, 4747–4753. doi:10.5897/AJB2013.12423
  • van der Vossen, H.A.M. (1997). Strategies of variety improvement in cocoa with emphasis on durable disease resistance (pp. 32). INGENIC (International Group for Genetic Improvement of Cocoa) external review, University of Reading, Reading RG6 2AS, UK.
  • Zietkiewicz, E., Rafalski, A., & Labuda, D. (1994). Genome fingerprinting by simple sequence repeat (SSR)-anchored polymerase chain reaction amplification. Genomics, 20, 176–183. doi:10.1006/geno.1994.1151

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