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Perspective

The CCAP KnowledgeBase: linking protistan and cyanobacterial biological resources with taxonomic and molecular data

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Pages 407-413 | Received 23 May 2013, Accepted 23 Oct 2013, Published online: 03 Dec 2013

References

  • Adl, S.M., Simpson, A.G.B., Lane, C.E., Lukes, J., Bass, D., Bowser, S.S., Brown, M.W., Burki, F., Dunthorn, M., Hampl, V., Heiss, A., Hoppenrath, M., Lara, E., Le Gall, L., Lynn, D.H., McManus, H., Mitchell, E.A.D., Mozley-Stanridge, S.E., Parfrey, L.W., Pawlowski, J., Rueckert, S., Shadwick, L., Schoch, C.L., Smirnov, A. & Spiegel, F.W. 2012. The revised classification of eukaryotes. Journal of Eukaryotic Microbiology 59, 429–514.
  • Archibald, J.M. 2011. Newly identified and diverse plastid-bearing branch on the eukaryotic tree of life. Proceedings of the National Academy of Sciences USA 108, 1496–1500.
  • Baldauf, S.L. 2008. An overview of the phylogeny and diversity of eukaryotes. Journal of Systematics and Evolution 46, 263–273.
  • Berninger, U.G., Finlay, B.J. & Kuuppoleinikki, P. 1991. Protozoan control of bacterial abundances in fresh-water. Limnology and Oceanography 36, 139–147.
  • Bridge, P.D., Roberts, P.J., Spooner, B.M. & Panchal, G. 2003. On the reliability of published DNA sequences. New Phytologist 160, 43–48.
  • Caron, D.A. & Hutchins, D.A. 2013. The effects of changing climate on microzooplankton grazing and community structure: drivers, predictions and knowledge gaps. Journal of Plankton Research 35, 235–252.
  • Chambouvet, A., Morin, P., Marie, D. & Guillou, L. 2008. Control of toxic marine dinoflagellate blooms by serial parasitic killers. Science 322:1254–1257.
  • Chavez, F.P., Messie, M. & Pennington, J.T. 2011. Marine primary production in relation to climate variability and change. Annual Review of Marine Science 3, 227–260.
  • Christaki, U., Jacquet, S., Dolan, J.R., Vaulot, D. & Rassoulzadegan, F. 1999. Growth and grazing on Prochlorococcus and Synechococcus by two marine ciliates. Limnology and Oceanography 44: 52–61.
  • Day, J.G. & Stacey, G.N. 2008. Biobanking. Molecular Biotechnology 40, 202–213.
  • Day, J.G., Pröschold, T., Friedl, T., Lorenz, M. & Silva, P.C. 2010. Conservation of microalgal type material: approaches needed for 21st century science. Taxon 59, 3–6.
  • Degerlund, M., Huseby, S., Zingone, A., Sarno, D. & Landfald, B. 2012. Functional diversity in cryptic species of Chaetoceros socialis Lauder (Bacillariophyceae). Journal of Plankton Research 34, 416–431.
  • Del Campo, J. & Massana, R. 2011. Emerging diversity within Chrysophytes, Choanoflagellates and Bicosoecids based on molecular surveys. Protist, 162, 435–448.
  • Falkowski, P.G., Katz, M.E., Knoll, A.H., Quigg, A., Raven, J.A., Schofield, O. & Taylor, F.J.R. 2004. The evolution of modern eukaryotic phytoplankton. Science 305, 354–360.
  • Gachon, C.M.M., Day, J.G., Campbell, C.N., Pröschold, T., Saxon, R.J. & Küpper, F.C. 2007. The Culture Collection of Algae and Protozoa (CCAP): a biological resource for protistan genomics. Gene 406, 51–57.
  • Gachon, C.M.M., Sime-Ngando, T., Strittmatter, M., Chambouvet, A. & Kim, G.H. 2010. Algal diseases: spotlight on a black box. Trends in Plant Science 15, 633–640.
  • Glücksman, E., Snell, E.A., Berney, C., Chao, E.E., Bass, D. & Cavalier-Smith, T. 2011. The novel marine gliding zooflagellate genus Mantamonas (Mantamonadida ord. n.: Apusozoa). Protist 162, 207–221.
  • Guiry, M.D. & Guiry, G.M. 2013. AlgaeBase. World-wide electronic publication, National University of Ireland, Galway. http://www.algaebase.org; accessed 7 May 2013.
  • Hartmann, M., Grob, C., Tarran, G.A., Martin, A.P., Burkill, P.H., Scanlan, D.J. & Zubkov, M.V. 2012. Mixotrophic basis of Atlantic oligotrophic ecosystems. Proceedings of the National Academy of Sciences USA 109, 5756–5760.
  • Keeling, P.J., Burger, G., Durnford, D.G., Lang, B.F., Lee, R.W., Pearlman, R.E., Roger, A.J. & Gray, M.W. 2005. The tree of eukaryotes. Trends in Ecology and Evolution 20, 670–676.
  • Kim, E., Harrison, J.W., Sudek, S., Jones, M.D.M., Wilcox, H.M., Richards, T.A., Worden, A.Z. & Archibald, J.M. 2011. Newly identified and diverse plastid-bearing branch on the eukaryotic tree of life. Proceedings of the National Academy of Sciences USA 108, 1496–1500.
  • Kimura, H., Sato, M., Sugiyama, C. & Naganuma, T. 2001. Coupling of thraustochytrids and POM, and of bacterio- and phytoplankton in a semi-enclosed coastal area: implication for different substrate preference by the planktonic decomposers. Aquatic Microbial Ecology 25, 293–300.
  • Küpper, F.C., Feiters, M.C., Olofsson, B., Kaiho, T., Yanagida, S., Zimmermann, M.B., Carpenter, L.J., Luther III, G.W., Lu, Z., Jonsson, M. & Kloo, L. 2011. Commemorating two centuries of iodine research: an interdisciplinary overview of current research. Angewandte Chemie – International Edition 50, 11598–11620.
  • Massana, R., Terrado, R., Forn, I., Lovejoy, C. & Pedros-Alio, C. 2006. Distribution and abundance of uncultured heterotrophic flagellates in the world oceans. Environmental Microbiology 8, 1515–1522.
  • Milledge, J.J. 2011. Commercial application of microalgae other than as biofuels: a brief review. Reviews in Environmental Science and Biotechnology 10, 31–41.
  • Morrissey, J. & Bowler, C. 2012. Iron utilization in marine cyanobacteria and eukaryotic algae. Frontiers in Microbiology 3, 43.
  • Müller J., Friedl T., Hepperle, D., Lorenz, M. & Day, J.G. 2005. Distinction of isolates among multiple strains of Chlorella vulgaris (Chlorophyta, Trebouxiophyceae) and testing conspecificity with Amplified Fragment Length Polymorphism and ITS rDNA sequences. Journal of Phycology 41, 1236–1247.
  • Popper, Z.A., Michel, G., Hervé, C., Domozych, D.S., Willats, W.G.T., Tuohy, M.G., Kloareg, B. & Stengel, D.B. 2011. Evolution and diversity of plant cell walls: from algae to flowering plants. Annual Review in Plant Biology 62, 567–590.
  • Pröschold, T., Marin, B., Schlösser, U.G. & Melkonian, M. 2001. Molecular phylogeny and taxonomic revision of Chlamydomonas (Chlorophyta). I. Emendation of Chlamydomonas Ehrenberg and Chloromonas Gobi, and description of Oogamochlamys gen. nov and Lobochlamys gen. nov. Protist 152, 265–300.
  • Rybalka, N., Wolf, M., Andersen, R.A. & Friedl, T. 2013. Congruence of chloroplast- and nuclear-encoded DNA sequence variations used to assess species boundaries in the soil microalga Heterococcus (Stramenopiles, Xanthophyceae). BioMed Central Evolutionary Biology 13, Art. No. 39.
  • Smirnov, A.V., Chao, E., Nassonova, E.S. & Cavalier-Smith, T. 2011. A revised classification of naked lobose amoebae (Amoebozoa: Lobosa). Protist 162, 545–570.
  • Steiner, C.F., Long, Z.T., Krumins, J.A. & Morin, P.J. 2006. Population and community resilience in multitrophic communities. Ecology 87, 996–1007.
  • Tindall, B.J. 2007. Vacuum drying and cryopreservation of prokaryotes. Methods in Molecular Biology 368, 73–98.
  • Tompkins, J., Deville, M.M., Day, J.G. & Turner, M.F. 1995. Culture Collection of Algae and Protozoa Catalogue of strains, 6th Edition. Culture Collection of Algae and Protozoa, Ambleside.
  • Williams, P.J.L. & Laurens, L.M.L. 2010. Microalgae as biodiesel and biomass feedstocks: review and analysis of the biochemistry, energetics and economics. Energy and Environmental Science 3, 554–590.