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Research Articles

Three new species of Stiphrornis (Aves: Muscicapidae) from the Afro-tropics, with a molecular phylogenetic assessment of the genus

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Pages 87-104 | Received 22 Apr 2016, Accepted 07 Aug 2016, Published online: 28 Sep 2016

References

  • Aliabadian, M., Kaboli, M., Förschler, M. I., Nijman, V., Chamani, A., Tillier, A., … Zuccon, D. (2012). Convergent evolution of morphological and ecological traits in the open-habitat chat complex (Aves, Muscicapidae: Saxicolinae). Molecular Phylogenetics and Evolution, 65, 35–45.
  • Anhuf, D., Ledru, M. P., Behling, H., Da Cruz, F. W., Cordeiro, R. C., Van Der Hammen, T., … Da Silva Dias, P. L. (2006). Paleoenvironmental change in Amazonian and African rainforest during the LGM. Palaeogeography, Palaeoclimatology, Palaeoecology, 239, 510–527.
  • Anthony, N. M., Johnson-Bawe, M., Jeffery, K., Clifford, S. L., Abernethy, K. A., Tutin, C. E., … & Bruford, M. W. (2007). The role of Pleistocene refugia and rivers in shaping gorilla genetic diversity in central Africa. Proceedings of the National Academy of Sciences USA, 104, 20432–20436.
  • Anthony, N. M. Atteke, C., Bruford, M. W., Dallmeier, F., Freedman, A., Hardy, O., … Gonder, M. K. (2015). Evolution and Conservation of Central African Biodiversity: Priorities for Future Research and Education in the Congo Basin and Gulf of Guinea. Biotropica, 47, 6–17.
  • Bates, J. M., & Voelker, G. (2015). Scientific collecting in Malawi, a response to Dowsett-Lemaire et al. Bird Conservation International, 25, 270–279.
  • Bates, J. M., Bowie, R. C. K., Willard, D. E., Voelker, G., & Kahindo, C. (2004). A need for continued collecting of avian voucher specimens in Africa: Why blood is not enough. Ostrich, 75, 187–191.
  • Beadle, L. C. (1981). The inland waters of tropical Africa: An introduction to tropical limnology (2nd ed.). London: Longman.
  • Beresford, P., & Cracraft, J. (1999). Speciation in African Forest Robins (Stiphrornis): Species limits, phylogenetic relationships, and molecular biogeography. American Museum Novitates, 3270, 1–22.
  • Boano, G., Vinals, N., Durante, A., & Pavia, M. (2015). Apparent sympatry of Stiphrornis pyrrholaemus Schmidt & Angehr, 2008 and S. xanthogaster Sharpe, 1903 (Passeriformes: Muscicapidae) in Gabon, and taxonomic implications. Zootaxa, 4032, 127–133.
  • Bohoussou, K. H., Cornette, R., Akpatou, B., Colyn, M., Peterhans, J. K., Kennis, J., … Nicholas, V. (2015). The phylogeography of the rodent genus Malacomys suggests multiple Afrotropical Pleistocene lowland forest refugia. Journal of Biogeography, 42, 2049–2061.
  • Brooks, T. M., Mittermeier, R. A., da Fonseca, G. A. B., Gerlach, J., Hoffmann, M., Lamoreux, J. F., … Rodrigues, A. S. L. (2006). Global biodiversity conservation priorities. Science, 313, 58–61.
  • Collar, N. J. (2005). Family Turdidae (Thrushes). In J. del Hoyo, A. Elliott, & D. A., Christie (Eds.), Handbook of Birds of the World (Vol. 10, pp. 514–807). Barcelona: Lynx Edicions.
  • Cracraft, J. (1983). Species concepts and speciation analysis. In R. R. Johnston (Ed.), Current Ornithology, (Vol. 1, pp. 159–187). New York: Plenum Press.
  • Dickinson, E. C., & Christidis, L. (Eds.). (2014). The Howard and Moore Complete Checklist of the Birds of the World (4th ed., Vol. 2). Eastbourne, U.K.: Aves Press.
  • Drummond, A. J., & Rambaut, A. (2007). BEAST: Bayesian evolutionary analysis by sampling trees. BioMed Central Evolutionary Biology, 7, 214.
  • Drummond, A. J., Suchard, M. A., Xie, D., & Rambaut, A. (2012). Bayesian phylogenetics with BEAUti and the BEAST 1.7. Molecular Biology and Evolution, 29, 1969–1973.
  • Fjeldså, J., & Lovett, J. C. (1997). Geographical patterns of old and young species in African forest biota: The significance of specific montane areas as evolutionary centres. Biodiversity and Conservation, 6, 325–346.
  • Groenenberg, D. S. J., Beintema, A. J., Dekker, R. W., & Gittenberger, E. (2008). Ancient DNA elucidates the controversy about the flightless island hens (Gallinula sp.) of Tristan da Cunha. Public Library of Science ONE, 3, e1835.
  • Hansen, L. A., Burgess, N. D., Fjeldså, J., & Rahbek, C. (2007). One degree resolution databases of the distribution of birds in Sub-Saharan Africa, On-line data source. Denmark: Zoological Museum, University of Copenhagen.
  • Holthuis, L. B. (1968). Biografische notities betreffende verzamelaars van het Rijksmuseum van Natuurlijke Historie te Leiden, 1. Hendrikus Severinus Pel (1818–1876). Zoölogische Verhandelingen, 10, 1–32.
  • Huelsenbeck, J. P., & Ronquist, F. (2001). MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics, 17, 754–755.
  • Huntley, J. W., & Voelker, G. (2016). Cryptic diversity in Afro-tropical forests: The systematics and biogeography of the avian genus Bleda. Molecular Phylogenetics and Evolution, 99, 297–308.
  • Irwin, M. P. S., & Clancey, P. A. (1974). A re-appraisal of the generic relationships of some African forest-dwelling robins (Aves: Turdidae). Arnoldia (Rhodesia), 6, 1–19.
  • Jetz, W., Rahbek, C., & Colwell, R. K. (2004). The coincidence of rarity and richness and the potential signature of history in centres of endemism. Ecology Letters, 7, 1180–1191.
  • Keith, S., Urban, E. K., & Fry, C. H. (1992). The Birds of Africa (Vol. IV). London: Academic Press.
  • Lerner, H. R. L., Meyer, M., James, H. F., Hofreiter, M., & Fleischer, R. C. (2011). Multilocus resolution of phylogeny and timescale in the extant adaptive radiation of Hawaiian honeycreepers. Current Biology, 21, 1838–1844.
  • Light, J. E., Nessner, C., Gustafsson, D., Wise, S., & Voelker, G. (2016). Remarkable levels of avian louse (Insecta: Phthiraptera) diversity in the Congo Basin. Zoologica Scripta, 45, 538–551.
  • Maley, J. (1996). The African rain forest – main characteristics of changes in vegetation and climate from the Upper Cretaceous to the Quaternary. Proceedings of the Royal Society of Edinburgh, 104B, 31–73.
  • Marks, B. D. (2010). Are lowland rainforests really evolutionary museums? Phylogeography of the green hylia (Hylia prasina) in the Afrotropics. Molecular Phylogenetics and Evolution, 55, 178–184.
  • Mayr, E., & O'Hara, R. J. (1986). The biogeographic evidence supporting the Pleistocene forest refuge hypothesis. Evolution, 40, 55–67.
  • Messing, J. (1983). New M13 vectors for cloning. Methods in Enzymology, 101, 20–78.
  • Nicolas, V., Missoup, A. D., Denys, C., Kerbis Peterhans, J., Katuala, P., … Colyn, M. (2011). The roles of rivers and Pleistocene refugia in shaping genetic diversity in Praomys misonnei in tropical Africa. Journal of Biogeography, 38, 191–207.
  • Nylander, J. A. A. (2004). MrModeltest v2. Program distributed by the author. Uppsala University: Evolutionary Biology Centre.
  • Outlaw, R. K., Voelker, G., & Outlaw, D. C. (2007). Molecular systematics and historical biogeography of the Rock-Thrushes (Muscicapidae: Monticola). Auk, 124, 561–577.
  • Quérouil, S., Verheyen, E., Dillen, M., & Colyn, M. (2003). Patterns of diversification in two African forest shrews: Sylvisorex johnstoni and Sylvisorex ollula (Soricidae, Insectivora) in relation to paleo-environmental changes. Molecular Phylogenetics and Evolution, 28, 24–37.
  • Rambaut, A., & Drummond, A. J. (2007). TRACER. Oxford: University of Oxford.
  • Rambaut, A. (2008). FigTree. Distributed by the author. Retrieved from http://tree.bio.ed.ad.uk/software/figtree/ (accessed 17 August 2016).
  • Rosevear, D. R. (1965). The Bats of West Africa. London: British Museum (Natural History).
  • Rozen, S., & Skaletsky, H. (2000). Primer3 on the WWW for general users and for biologist programmers. Methods in Molecular Biology, 132, 365–386.
  • Salzmann, U., & Hoelzmann, P. (2005). The Dahomey Gap: An abrupt climatically induced rain forest fragmentation in West Africa during the late Holocene. The Holocene, 15, 190–199.
  • Sinclair, I., & Ryan, P. (2010). Birds of Africa, south of the Sahara. Cape Town: Struik Nature.
  • Schmidt, B. K., Foster, J. T., Angehr, G. R., Durrant, K. L., & Fleischer, R. C. (2008). A new species of African forest robin from Gabon (Passeriformes: Muscicapidae: Stiphrornis). Zootaxa, 1850, 27–42.
  • Smithe, F. B. (1975). Naturalist's color guide. New York: American Museum of Natural History.
  • Stankiewicz, J., & de Wit, M. J. (2006). A proposed drainage evolution model for Central Africa - Did the Congo flow east? Journal of African Earth Sciences, 44, 75–84.
  • Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M., & Kumar, S. (2011). MEGA5: Molecular Evolutionary Genetics Analysis using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods. Molecular Biology and Evolution, 28, 2731–2739.
  • Tchernichovski, O., Nottebohm, F., Ho, C. E., Pesaran, B., & Mitra, P. P. (2000). A procedure for an automated measurement of song similarity. Animal Behavior, 59, 1167–1176.
  • Telfer, P. T., Souquiere, S., Clifford, S. L., Abernethy, K. A., Bruford, M. W., Disotell, T. R., … Wickings, E. J. (2003). Molecular evidence for deep phylogenetic divergence in Mandrillus sphinx. Molecular Ecology, 12, 2019–2024.
  • Voelker, G., Outlaw, R. K., & Bowie, R. C. K. (2010). Pliocene forest dynamics as a primary driver of African bird speciation. Global Ecology and Biogeography, 19, 111–121.
  • Voelker, G., Outlaw, R. K., Reddy, S., Tobler, M., Bates, J. M., Hackett, S. J., … Gnoske, T. P. (2010). A new species of boubou from the Albertine Rift (Malaconotidae: Laniarius). Auk, 127, 678–689.
  • Voelker, G., Marks, B. D., Kahindo, C., A'genonga, U., Bapeamoni, F., Duffie, L. E., … Light, J. E. (2013). River barriers and cryptic biodiversity in an evolutionary museum. Ecology and Evolution, 3, 536–545.
  • Weir, J. T., & Schluter, D. (2008). Calibrating the avian molecular clock. Molecular Ecology, 17, 2321–2328.
  • White, F. (1983). The Vegetation of Africa. Paris: UNESCO.
  • Zuccon, D., & Ericson, P. G. (2010). A multi-gene phylogeny disentangles the chat-flycatcher complex (Aves: Muscicapidae). Zoologica Scripta, 39, 213–224.

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