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Research Article

Evolutionary trends in the columnar cactus genus Eulychnia (Cactaceae) based on molecular phylogenetics, morphology, distribution, and habitat

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Pages 643-657 | Received 01 Dec 2017, Accepted 01 May 2018, Published online: 24 Sep 2018

References

  • Anderson, E. F. (2001). The cactus family. Portland, OR: Timber Press, Inc.
  • Anderson, E. F. (2005). Das grosze Kakteenlexikon. Stuttgart: Eugen Ulmer.
  • Arakaki, M., Christin, P.-A., Nyffeler, R., Lendel, A., Eggli, U., Ogburn, R. M., … Edwards, E. J. (2011). Contemporaneous and recent radiations of the world’s major succulent plant lineages. Proceedings of the National Academy of Sciences, USA, 108, 8379–8384.
  • Backeberg, C. (1941). Philippicereus. Cactaceae. Jahrbücher der Deutschen Kakteen-Gesellschaft. Pt. 2, 75.
  • Backeberg, C. (1977). The Cactus Lexicon. Poole: Blandford Press. [English edition]
  • Bárcenas, R. T., Yesson, C., & Hawkins, J. A. (2011). Molecular systematics of the Cactaceae. Cladistics, 27, 470–489.
  • Barthlott, W., & Hunt, D. R. (1993). Cactaceae. In: K. Kubitzki, J. G. Rohwer, & V. Bittrich (Eds.), The families and genera of vascular plants (Vol. 2, pp. 161–197). Berlin: Springer Verlag.
  • Britton, N. L., & Rose, J. N. (1920). The Cactaceae (Vol. 2). Washington, DC: Carnegie Institute.
  • Buxbaum, F. (1950-55). Morphology of cacti. Pasadena, CA: Abbey Garden Press.
  • Cáceres, F., Saldivia, P., Guerrero, P., Walter, H. E., & Faundez, L. (2013). Eulychnia iquiquensis. The IUCN Red List of Threatened Species 2013: E.T152841A685115 (accessed 9 October 2017).
  • Cullmann, W. (1958). Eulychnia ritteri. Kakteen und Andere Sukkulenten, 9, 121–122.
  • Dillon, M. O., Tu, T., Xie, L., Quipuscoa, S. V., & Wen, J. (2009). Biogeographic diversification in Nolana (Solanaceae), a ubiquitous member of the Atacama and Peruvian deserts along the western coast of South America. Journal of Systematics & Evolution, 47, 457–476.
  • Donati, D., Bianchi, C., Pezzi, G., Conte, C., Hofer, A., & Chiarucci, A. (2016). Biogeography and ecology of the genus Turbinicarpus (Cactaceae): Environmental controls of taxa richness and morphology. Systematics and Biodiversity, 14, 1–11.
  • Duarte, M., Guerrero, P. C., Carvallo, G., & Bustamante, R. O. (2014). Conservation network design for endemic cacti under taxonomic uncertainty. Biological Conservation, 176, 236–242.
  • Eggli, U., & Leuenberger, B. E. (1999). Eulychnia castanea Phil. (Cactaceae): geographical distribution and variation. Gayana Botanica, 55, 89–92.
  • Eggli, U., & Leuenberger, B. E. (2000). Eulychnia castanea Phil., Not easily accessible either by land or by sea. Cactus and Succulent Journal, 72, 36–40.
  • Elshire, R. J., Glaubitz, J. C., Sun, Q., Poland, J. A., Kawamoto, K., Buckler, E. S., & Mitchell, S. E. (2011). A robust, simple genotyping-by-sequencing (GBS) approach for high diversity species. Public Library of Science One, 6, e19379.
  • Endler, J., & Buxbaum, F. (1974). Die Pflanzenfamilie der Kakteen. Minden: Albert Philler Verlag.
  • Faundez, L., Guerrero, P., Saldivia, P., & Walter, H. E. (2013a). Eulychnia acida. The IUCN Red List of Threatened Species 2013: E.T152588A654510 (accessed 09 October 2017).
  • Faundez, L., Guerrero, P., Saldivia, P., & Walter, H. E. (2013b). Eulychnia breviflora. The IUCN Red List of Threatened Species 2013: E.T152005A586426 (accessed 09 October 2017).
  • Faundez, L., Guerrero, P., Saldivia, P., & Walter, H. E. (2013c). Eulychnia castanea. The IUCN Red List of Threatened Species 2013: E.T152336A625297 (accessed 09 October 2017).
  • Guerrero, P. C., Carvallo, G. O., Nasser, J. M., Rojas-Sandoval, J., Sanz, V., & Medel, R. (2012). Ecology and evolution of negative and positive interactions in Cactaceae: Lessons and pending tasks. Plant Ecology & Diversity, 5, 1–11.
  • Gibson, A. C., & Nobel, P. S. (1986). The Cactus Primer. Cambridge, MA: Harvard University Press.
  • Guerrero, P. C., Durán, A. P., & Walter, H. E. (2011). Latitudinal and altitudinal patterns of the endemic cacti from the Atacama Desert to Mediterranean Chile. Journal of Arid Environments, 75, 991–997.
  • Guerrero, P. C., Walter, H. E., Arroyo, M. T. K., Peña-Hernández, C., Tamburino, Í., De Benedictis, M., & Larridon, I. (unpublished data). Molecular phylogeny of the large South American genus Eriosyce (Notocacteae, Cactaceae): generic delimitation and profound changes at infrageneric and species ranks. Taxon, 67.
  • Harmon, L. J., Weir, J. T., Brock, C. D., Glor, R. E., & Challenger, W. (2008). GEIGER: Investigating evolutionary radiations. Bioinformatics, 24, 129–131.
  • Hernández-Hernández, T., Hernández, H. M., De-Nova, J. A., Puente, R., Eguiarte, L. E., & Magallón, S. (2011). Phylogenetic relationships and evolution of growth form in Cactaceae (Caryophyllales, Eudicotyledoneae). American Journal of Botany, 98, 44–61.
  • Hoffmann, A. E. (1989). Cactáceas en la flora silvestre de Chile. Santiago: Fundación Claudio Gay.
  • Hoffmann, A. E., & Walter H. E. (2004). Cactáceas en la flora silvestre de Chile, 2nd ed. Santiago: Fundación Claudio Gay.
  • Hoxey, P., & Klaassen, P. (2011). Two new combinations in the genus Eulychnia (Cactaceae). Cactus and Succulent Journal, 83, 169–175.
  • Hunt, D. (Ed.). (2002). Eulychnia. Cactaceae Systematics Initiatives, 14, 6. Milborne Port.
  • Hunt, D., Taylor, N., & Charles, G. (Eds.). (2006). The new cactus lexicon: Descriptions and illustrations of the cactus family compiled and edited by members of the International Cactaceae Systematics Group, vols. 1,2. Milborne Port: DH Books.
  • Hunt, D. (Ed.). (2013). Eulychnia. Cactaceae Systematics Initiatives, 29, 6–11. Milborne Port.
  • Jara-Arancio, P., Arroyo, M. T. K., Guerrero, P. C., Hinojoso, L. F., Arancio, G., & Méndez, M. A. (2014). Phylogenetic perspectives on biome shifts in Leucocoryne (Alliaceae) in relation to climatic niche evolution in Western South America. Journal of Biogeography, 41, 328–338.
  • Katoh, K., Asimenos, G., & Toh, H. (2009). Multiple alignment of DNA sequences with MAFFT. Methods in Molecular Biology, 537, 39–64.
  • Katoh, K., & Standley, D. M. (2013). MAFFT multiple sequence alignment software version 7: Improvements in performance and usability. Molecular Biology and Evolution, 30, 772–780.
  • Kearse, M., Moir, R., Wilson, A., Stones-Haves, S., Cheung, M., Sturrock, S., … Drummond, A. (2012). Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics, 28, 1647–1649.
  • Korotkova, N., Borsch, T., Quandt, D., Taylor, N. P., Müller, K. F., & Barthlott, W. (2011). What does it take to resolve relationships and to identify species with molecular markers? An example from the epiphytic Rhipsalideae (Cactaceae). American Journal of Botany, 98, 1549–1572.
  • Korotkova, N., Zabel, L., Quandt, D., & Barthlott, W. (2010). A phylogenetic analysis of Pfeiffera and the reinstatement of Lymanbensonia as an independently evolved lineage of epiphytic Cactaceae within a new tribe Lymanbensonieae. Willdenowia, 40, 151–172.
  • Lanfear, R., Calcott, B., Ho, S. Y. W., & Guindon, S. (2012). Partition Finder: Combined selection of partitioning schemes and substitution models for phylogenetic analyses. Molecular Biology and Evolution, 29, 1695–1701.
  • Larridon, I., Shaw, K., Cisternas, M. A., Paizanni Guillén, A., Sharrock, S., Oldfield, S., … Samain, M. S. (2014). Is there a future for the Cactaceae genera Copiapoa, Eriosyce and Eulychnia? a status report of a prickly situation. Biodiversity and Conservation, 23, 1249–1287.
  • Larridon, I., Walter, H. E., Guerrero, P. C., Duarte, M., Cisternas, M. A., Peña Hernández, C., … Samain, M. S. (2015). An integrative approach to understanding the evolution and biodiversity of Copiapoa (Cactaceae), a threatened genus from Chile’s Atacama Desert. American Journal of Botany, 102, 1506–1520.
  • Lemmon, E. M., & Lemmon, A. R. (2013). High-throughput genomic data in systematics and phylogenetics. Annual Review in Ecology, Evolution and Systematics, 44, 99–121.
  • Leuenberger, B. E., & Eggli, U. (1996). A note on a mixed type collection: Cereus deserticola Werderm. (Cactaceae). Willdenowia, 25, 687–691.
  • Leuenberger, B. E., & Eggli, U. (2000). The genus Eulychnia (Cactaceae) in Chile: Notes on the taxonomy, types, and other old specimens. Haseltonia, 7, 63–76.
  • Luebert, F., & Pliscoff, P. (2006). Sinopsisbioclimática y vegetacional de Chile. Santiago: Editorial Universitaria.
  • Majure, L. C., Puente, R., Griffith, M. P., Judd, W. S., Soltis, P. S., & Soltis, D. S. (2012). Phylogeny of Opuntia s.s. (Cactaceae): Clade delineation, geographic origins, and reticulate evolution. American Journal of Botany, 99, 847–864.
  • Miller, M. A., Pfeiffer, W., & Schwartz, T. (2010). Creating the CIPRES science gateway for inference of large phylogenetic trees. 14 November 2010, New Orleans, LA, pp. 1–8.
  • Mitchell, N., Lewis, P. O., Lemmon, E. M., Lemmon, A. R., & Holsinger, K. E. (2017). Anchored phylogenomics improves the resolution of evolutionary relationships in the rapid radiation of Protea L. American Journal of Botany, 104, 102–115.
  • Mittermeier, R. A., Turner, W. R., Larsen, F. W., Brooks, T. M., & Gascon, C. (2011). Global biodiversity conservation: The critical role of hotspots. In F. E. Zachos & J. C. Habel (Eds.), Biodiversity hotspots: Distribution and protection of conservation priority areas (pp. 3–22). Heidelberg: Springer.
  • Muller, J., Muller, K., Neinhuis, C., & Quandt, D. (2010). PhyDE – Phylogenetic Data Editor, version 0.9971. Retrieved from http://www.phyde.de/ (accessed 6 January 2017).
  • Nicholls, J. A., Pennington, R. T., Koenen, E. J. M., Hughes, C. E., Hearn, J., Bunnefeld, L., … Kidner, C. E. (2015). Using targeted enrichment of nuclear genes to increase phylogenetic resolution in the neotropical rain forest genus Inga (Leguminosae: Mimosoideae). Frontiers in Plant Sciences, 6, 710.
  • Nyffeler, R. (2002). Phylogenetic relationships in the cactus family (Cactaceae) based on evidence from trnK/matK and trnL-trnF sequences. American Journal of Botany, 89, 312–326.
  • Nyffeler, R., & Eggli, U. (2000). Similarity is only skin-deep: The use of comparative plant anatomy as illustrated by a study of columnar cacti from Chile (Eulychnia and Echinopsis, Cactaceae). Botanica Helvetica, 110, 1–10.
  • Nyffeler, R., & Eggli, U. (2010). A farewell to dated ideas and concepts—Molecular phylogenetics and a revised suprageneric classification of the family Cactaceae. Schumannia, 6, 109–149.
  • Nyffeler, R., Eggli, U., & Leuenberger, B. E. (1997). Noteworthy idioblastic sclereids in the stems of Eulychnia (Cactaceae). American Journal of Botany, 84, 1192–1197.
  • Philippi, R. A. (1860). Florula Atacamensis seu Enumeratio Plantarum in itinere per desertum Atacamense observatarum. Halle: Eduard Anton.
  • R Development Core Team (2006). R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna. Retrieved from http://www.r-project.org/ (accessed 5 June 2017).
  • Rambaut, A., & Drummond, A. J. (2007). Tracer, a MCMC trace analysis tool. institute of evolutionary biology, university of edinburgh. Retrieved from http://beast.bio.ed.ac.uk/ (accessed 6 January 2017).
  • Revell, L. J. (2012). phytools: An R package for phylogenetic comparative biology (and other things). Methods in Ecology and Evolution, 3, 217–223.
  • Ritter, F. (1964). Diagnoses von neuen Kakteen. Taxon, 13, 114–118.
  • Ritter, F. (1980). Kakteen in Südamerika Ergebnisse meiner 20 jährigen Feldforschungen, Band 3. Spangenberg: Friedrich Ritter Selbstverlag. Retrieved from http://www.worldcat.org/title/kakteen-in-sudamerika-ergebnisse-meiner-20jahrigen-feldforschungen-band-3-chile/oclc/475383419 (accessed 4 September 2018).
  • Ronquist, F., Teslenko, M., van der Mark, P., Ayres, D. L., Darling, A., Hohna, S., … Huelsenbeck, J. P. (2012). MrBayes 3.2: Efficient Bayesian phylogenetic inference and model choice across a large model space. Systematic Biology, 61, 539–542.
  • Rundel, P., Dillon, M. O., Palma, B., Mooney, H. A., Gulmon, S. L., & Ehleringer, J. R. (1991). The phytogeography and ecology of the coastal Atacama and Peruvian deserts. Aliso, 13, 1–49.
  • Schlumpberger, B. O., & Renner, S. S. (2012). Molecular phylogenetics of Echinopsis (Cactaceae): Polyphyly at all levels and convergent evolution of pollination modes and growth forms. American Journal of Botany, 99, 1335–1349.
  • Schulz, J. J., Cayuela, L., Rey-Benayas, J. M., & Schröder, B. (2011). Factors influencing vegetation cover change in Mediterranean Central Chile (1975-2008). Applied Vegetation Science, 14, 571–582.
  • Schulz, N., Aceituno, P., & Richter, M. (2011). Phytogeographic divisions, climate change and plant dieback along the coastal desert of northern Chile. Erdkunde, 65, 169–187.
  • Silva, G. A. R., Jojima, C. L., Moraes, E. M., Antonelli, A., Manfrin, M. H., & Franco, F. F. (2016). Intra and interspecific sequence variation in closely related species of Cereus (Cactaceae). Public Library of Science Biology, 65, 137–142.
  • Small, R. L., Ryburn, J. A., Cronn, R. C., Seelanan, T., & Wendel, J. F. (1998). The tortoise and the hare: Choosing between noncoding plastome and nuclear ADH sequences for phylogeny reconstruction in a recently diverged plant group. American Journal of Botany, 85, 1301–1315.
  • Stamatakis, A. (2014). RAxML Version 8: A tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics, 30, 1312–1313.
  • Stephens, Z. D., Lee, S. Y., Faghri, F., Campbell, R. H., Zhai, C., Efron, M. J., … Robinson, G. E. (2015). Big data: Astronomical or genomical? Public Library of Science Biology, 13, e1002195.
  • Stöver, B. C., & Müller, K. F. (2010). TreeGraph 2: Combining and visualizing evidence from different phylogenetic analyses. BioMed Central Bioinformatics, 11, 7. doi:10.1186/1471-2105-11-7
  • Vásquez-Sánchez, M., Terrazas, T., Arias, S., & Ochoterena, H. (2013). Molecular phylogeny, origin and taxonomic implications of the tribe Cacteae (Cactaceae). Systematics and Biodiversity, 11, 103–116.
  • Walter, H. E. (2008). Floral biology, phytogeography and systematics of Eriosyce subgenus Neoporteria (Cactaceae). Bradleya, 26, 75–98.
  • Walter, H. E. (2011). Protecting cacti: A pending and urgent task in Chile’s biodiversity conservation. In E. Figueroa (Ed.), Biodiversity conservation in the Americas: Lessons and policy recommendations (pp. 47–80). Santiago: Ocho Libros Editores.
  • Walter, H., & Mächler, W. (2006). An old acquaintance from the Guanillos Valley (Prov. de Atacama, Chile) is finally validated. CactusWorld, 24, 185–192.
  • Weitemier, K., Straub, S. C. K., Cronn, R. C., Fishbein, M., Schmickl, R., McDonnell, A., & Liston, A. (2014). Hyb-Seq: Combining target enrichment and genome skimming for plant phylogenomics. Applications in Plant Sciences, 2, 1400042.
  • Yang, Z. (2006). Computational molecular evolution. Oxford: Oxford University Press.

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