151
Views
2
CrossRef citations to date
0
Altmetric
Research Article

A phylogenetic study of two recently described endemic species of the Saxifraga granulata group from the central-north Mediterranean region (Italy) and their position in the context of the series Saxifraga (Saxifragaceae)

ORCID Icon, , & ORCID Icon
Pages 784-790 | Received 02 Jan 2018, Accepted 20 Jun 2018, Published online: 01 Oct 2018

References

  • Arrigoni, P. V. (1975). Rapporti floristici tra l'Arcipelago Toscano e le terre vicine [Floristic relations between the Tuscan Archipelago and the neighboring lands]. Lavori della Società Italiana di Biogeografia, n.s., 5, 55–65.
  • Arrigoni, P. V., Baldini, R. M., Foggi, B., & Signorini, M.A. (2003). Analysis of the floristic diversity of the Tuscan Archipelago for conservation purposes. Bocconea, 16, 245–259.
  • Borchsenius, F. (2009). FastGap 1.2. Department of Biological Sciences, University of Aarhus. Retrieved from http://www.aubot.dk/FastGap_home.htm (accessed 24 October 2017).
  • Casazza, G., Giordani, P., Benesperi, R., Foggi, B., Viciani, D., Filigheddu, R., … Mariotti, M. G. (2014). Climate change hastens the urgency of conservation for range-restricted plant species in the central-northern Mediterranean region. Biological Conservation, 179, 129–138.
  • Chapman, M. A., & Burke, J. M. (2007). Genetic divergence and hybrid speciation. Evolution, 61, 1773–1780.
  • Cheng, T., Xu, C., Lei, L., Li, C., Zhang, Y., & Zhou, S. (2016). Barcoding the kingdom Plantae: new PCR primers for ITS regions of plants with improved universality and specificity. Molecular Ecology Resources, 16, 138–149.
  • Commission of the European Community. (1992). Council Directive 92/43/EEC of 21 May 1992 on the conservation of natural habitats and of wild fauna and flora. Official Journal L206. 22.07.92 (Consolidated version 1.1.2007).
  • Coppi, A., Guidi, T., Viciani, D., & Foggi, B. (2014). Genetic structure of Linaria capraria Mill. (Plantaginaceae) and endemic species of the Tuscan Archipelago (Central Mediterranean). Plant Biosystems, 148, 249–258.
  • Doyle, J. J., & Doyle, J. L. (1990). Isolation of plant DNA from fresh tissue. Focus, 12, 13–15.
  • Ebersbach, J., Muellner-Riehl, A. N., Michalak, I., Tkach, N., Hoffmann, M. H., Röser, M., … Favre, A. (2017). In and out of the Qinghai-Tibet Plateau: Divergence time estimation and historical biogeography of the large arctic-alpine genus Saxifraga L. Journal of Biogeography, 44, 900–910.
  • Favre, A., Päckert, M., Pauls, S. U., Jähnig, S. C., Uhl, D., Michalak, I., & Muellner-Riehl, A. N. (2015). The role of the uplift of the Qinghai-Tibetan Plateau for the evolution of Tibetan biotas. Biological Review, 90, 236–253.
  • Fenu, G., Ferretti, G., Gennai, M., Lahora, A., Mendoza-Fernández, A. J., Mota, J., … Orsenigo, S. (2017). Global and Regional IUCN Red List Assessments: 4. Italian Botanist, 4, 61–71.
  • Foggi, B., Viciani, D., Baldini, R. M., Carta, A., & Guidi, T. (2015). Conservation assessment of the endemic plants of the Tuscan Archipelago, Italy. Oryx, 49, 118–126.
  • García-Maroto, F., Garrido-Cárdenas, J. A., Gómez-Mercado, F., Guil-Guerrero, J. L., & López-Alonso, D. (2003). Natural hybridisation and phylogenetic position of Saxifraga trabutiana (Saxifragaceae) inferred from ISSR markers and ITS sequences. Annales Botanici Fennici, 40, 5–13.
  • Gornall, R. J. (1987). An outline of a revised classification of Saxifraga L. Botanical Journal of the Linnean Society, 95, 273–292.
  • Hall, T. A. (1999). BioEdit: A user-friendly biological sequence alignment editor analysis program for windows 95/98/NT. Nucleic Acids Symposium Series, 41, 95–98.
  • Katoh, K., & Standley, D. M. (2013). MAFFT Multiple Sequence Alignment Software Version 7: Improvements in performance and usability. Molecular Biology and Evolution, 30, 772–780.
  • Mannocci, M., Ferretti, G., Mazzoncini, V., Fiorini, G., Foggi, B., Lastrucci, L., … Viciani, D. (2016). Two new Saxifraga species (Saxifragaceae) endemic to Tuscan Archipelago (central-northern Mediterranean, Italy). Phytotaxa, 284, 108–130.
  • Mas De Xaxars, G., García-Fernández, A., Barnola, P., Martín, J., Mercadé, A., Vallès, J., … Garnatje, T. (2015). Phylogenetic and cytogenetic studies reveal hybrid speciation in Saxifraga subsect. Triplinervium (Saxifragaceae). Journal of Systematics and Evolution, 53, 53–62.
  • Montmollin de, B., & Strahm, W. (Eds.). (2005). The Top 50 Mediterranean Island Plants: Wild plants at the brink of extinction, and what is needed to save them. Gland, Switzerland & Cambridge, UK: IUCN/SSC Mediterranean Islands Plant Specialist Group.
  • Nilsson, T., & Jorde, P. E., (2008). Allozyme variation in allotetraploid Saxifraga osloensis and its diploid progenitors. Nordic Journal of Botany, 18, 425–430
  • Page, R. D. M. (1996). TreeView: An application to display phylogenetic trees on personal computers. Bioinformatics, 12, 357–358.
  • Posada, D. (2008). jModelTest: Phylogenetic model averaging. Molecular Biology and Evolution, 25, 1253–1256.
  • Ronquist, F., & Huelsenbeck, L. P. (2003). MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics, 19, 1572–1574.
  • Simmons, M. P., & Ochoterena, H. (2000). Gaps as characters in sequence-based phylogenetic analyses. Systematic Biology, 49, 369–381.
  • Soltis, D. E., Kuzoff, R. K., Conti., E., Gornall, R., & Ferguson, K. (1996). MatK and rbcL gene sequence data indicate that Saxifraga (Saxifragaceae) is polyphyletic. American Journal of Botany, 83, 371–382.
  • Stamatakis, A. (2006a). Phylogenetic models of rate heterogeneity: A high performance computing perspective. In Proceedings of 20th IEEE/ACM International Parallel and Distributed Processing Symposium. Rhodos, Greece: IPDPS2006.
  • Stamatakis, A. (2006b). RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics, 22, 2688–2690.
  • Stamatakis, A. (2014). RAxML Version 8: A tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics, 30, 1312–1313. 10.1093/bioinformatics/btu033.
  • Taberlet, P., Gielly, L., Pautou, G., & Bouvet, J. (1991). Universal primers for amplification of three non-coding regions of chloroplast DNA. Plant Molecular Biology, 17, 1105–1109.
  • Tamura, K., & Kumar, S. (2002). Evolutionary distance estimation under heterogeneous substitution pattern among lineages. Molecular Biology and Evolution, 19, 1727–1736.
  • Tamura, K., Nei, M., & Kumar, S. (2004). Prospects for inferring very large phylogenies by using the neighbor-joining method. Proceedings of the National Academy of Sciences (USA), 101, 11030–11035.
  • Tamura, K., Stecher, G., Peterson, D., Filipski, A., & Kumar, S. (2013). MEGA6: Molecular Evolutionary Genetics Analysis version 6.0. Molecular Biology and Evolution 30, 2725–2729.
  • Tkach, N., Röser, M., Miehe, G., Muellner-Riehl, A. N., Ebersbach, J., Favre, A., & Hoffmann, M. H. (2015). Molecular phylogenetics, morphology and a revised classification of the complex genus Saxifraga (Saxifragaceae). Taxon, 64, 1159–1187.
  • Vargas, P. (1997). Saxifraga L. In: S. Castroviejo, C. Aedo, M. Laínz, R. Morales, F. Muñoz Garmendia, G., … J. Paiva (Eds.), Flora iberica, vol. 5, Ebenaceae-Saxifragaceae (pp. 162–242). Madrid: Real Jardín Bótanico, CSIC.
  • Vargas, P. (2000). A phylogenetic study of Saxifraga sect. Saxifraga (Saxifragaceae) based on nrDNA ITS sequences. Plant Systematics and Evolution, 223, 59–70.
  • Vargas, P., Morton, C. M., & Jury, S. L. (1999). Biogeographic patterns in Mediterranean and Macaronesian species of Saxifraga (Saxifragaceae) inferred from phylogenetic analyses of ITS sequences. American Journal of Botany, 86, 724–734.
  • Webb, D. A. (1993). Saxifraga L. In: T. G. Tutin, N. A. Burges, A. O. Chater, J. R. Edmondson, V. H. Heywood, D.M. Moore … D. A. Webb (Eds.), Flora Europaea 1, (2nd ed., pp. 437–458). London: Cambridge University Press.
  • Webb, D. A., & Gornall, R. J. (1989). Saxifrages of Europe. London: Christopher Helm.
  • White, T. J., Bruns, T., Lee, S., & Taylor, J. (1990). Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In M. A. Innis, D. H. Gelfand, J. J. Sninsky, & J. W. White (Eds.), PCR protocols. A guide to methods and applications (pp. 315–322). New York: Academic Press.
  • Associate Editor: Nadia Bystriakova

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.