Combined multigene and morphological analysis reveals lineage-specific diversification of the neotropical freshwater crabs of the genus Fredius Pretzmann, 1967 (Brachyura, Pseudothelphusidae)

References

• Álvarez, F., Ojeda, J. C., Souza-Carvalho, E., Villalobos, J. L., Magalhães, C., Wehrtmann, I. S., & Mantelatto, F. L. (2021). Revision of the higher taxonomy of Neotropical freshwater crabs of the family Pseudothelphusidae, based on multigene and morphological analyses. Zoological Journal of the Linnean Society, 193(3), 973–1001. https://doi.org/10.1093/zoolinnean/zlaa162
   Web of Science ®Google Scholar
• Bott, R. (1967). Flusskrabben aus Brasilien und benachbarter Gebiete. Potamocarcinus (Kingsleya) Ortmann 1987 (Crustacea, Decapoda). Senckenbergiana Biologica, 48(4), 301–312.
   Google Scholar
• Campos, M. R. & Lemaitre, R. (1999). Two new freshwater crabs of the genus Ptychophallus Smalley, 1964 (Crustacea: Decapoda: Brachyura: Pseudothelphusidae) from Panama, with notes on the distribution of the genus. Proceedings of the Biological Society of Washington, 112(3), 553–561. https://www.biodiversitylibrary.org/part/45182
   Google Scholar
• Carvalho, F. L., Magalhães, C., & Mantelatto, F. L. (2014). Molecular and morphological differentiation between two Miocene-divergent lineages of Amazonian shrimps, with the description of a new species (Decapoda, Palaemonidae, Palaemon). Zookeys, 457, 79–108.
   PubMed Web of Science ®Google Scholar
• Coifmann, I. (1939). Potamonidi Della Guiana Inglese raccolti dal Prof. Nello Beccari. Archives of Zoology Italy, 27, 93–116.
   Google Scholar
• Colgan, D. J., McLauchlan, A., Wilson, G. D. F., Livingston, S. P., Edgecombe, G. D., Macaranas, J., Cassis, G., & Gray, M. R. (1998). Histone H3 and U2 snRNA DNA sequences and arthropod molecular evolution. Australian Journal of Zoology, 46(5), 419–437. https://doi.org/10.1071/ZO98048
   Web of Science ®Google Scholar
• Cremon, É. H., Rossetti, D. d F., Sawakuchi, A. d O., & Cohen, M. C. L. (2016). The role of tectonics and climate in the late Quaternary evolution of a northern Amazonian River. Geomorphology, 271, 22–39. https://doi.org/10.1016/j.geomorph.2016.07.030
   Web of Science ®Google Scholar
• Cumberlidge, N., Álvarez, F., & Villalobos, J. L. (2014). Results of the global conservation assessment of the freshwater crabs (Brachyura, Pseudothelphusidae and Trichodactylidae): The Neotropical region, with an update on diversity. ZooKeys, 457, 133–157. https://doi.org/10.3897/zookeys.457.6598.
   Google Scholar
• Ferreira, E., Zuanon, J., Forsberg, B., Goulding, M., & Briglia-Ferreira, S. R. (2007). Rio Branco. Peixes, Ecologia e Conservação de Roraima. (pp. 200). Manaus: Amazon Conservation Association, Instituto Nacional de Pesquisas da Amazônia, Sociedade Civil Mamirauá.
   Google Scholar
• Hall, T. A. (2005). BioEdit 7.0.5. North Carolina State University, Department of Microbiology. http://www.mbio.ncsu.edu/BioEdit/bioedit.html.
   Google Scholar
• Katoh, K., & Standley, D. M. (2013). MAFFT Multiple sequence alignment software version 7: Improvements in performance and usability. Molecular Biology and Evolution, 30(4), 772–780.
   PubMed Web of Science ®Google Scholar
• Kearse, M., Moir, R., Wilson, A., Stones-Havas, S., Cheung, M., Sturrock, S., Buxton, S., Cooper, A., Markowitz, S., Duran, C., Thierer, T., Ashton, B., Meintjes, P., & Drummond, A. (2012). Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics (Oxford, England), 28(12), 1647–1649. https://doi.org/10.1093/bioinformatics/bts199
   PubMed Web of Science ®Google Scholar
• Kumar, S., Stecher, G., Li, M., Knyaz, C., & Tamura, K. (2018). MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms. Molecular Biology and Evolution, 35(6), 1547–1549. https://doi.org/10.1093/molbev/msy096.
   PubMed Web of Science ®Google Scholar
• Latreille, P. A. (1825). Thelphuse, Thelphusa. In Encyclopédie Méthodique. Histoire naturelle. Entomologie, ou Histoire naturelle des Crustacés, des Arachnides et des Insectes, vol. 10. (pp. 561–564). https://www.biodiversitylibrary.org/item/155986#page/573/mode/1up
   Google Scholar
• López, B., & Pereira, G. (1996). Inventario de los crustaceos decapodos de las zonas alta y media del delta del rio Orinoco, Venezuela. Acta Biologica Venezolana, 16(3), 45–64.
   Google Scholar
• Lujan, N. K., & Armbruster, J. W. (2011). The Guiana Shield. In Albert, J.S. & Reis, R.E. (Eds.), Historical Biogeography of Neotropical Freshwater Fishes. (pp. 211–224). University of California Press.
   Google Scholar
• Luo, A., Qiao, H., Zhang, Y., Shi, W., Ho, S. Y., Xu, W., Zhang, A., & Zhu, C. (2010). Performance of criteria for selecting evolutionary models in phylogenetics: a comprehensive study based on simulated datasets. BioMedCentral Evolutionary Biology, 10(1), 242. https://doi.org/10.1186/1471-2148-10-242
   Google Scholar
• Magalhães, C. (1986). Revisão taxonômica dos caranguejos de água doce brasileiros da família Pseudothelphusidae (Crustacea, Decapoda). Amazoniana, 9(4), 609–636.
   Google Scholar
• Magalhães, C. (2003). The occurrence of freshwater crabs (Crustacea: Decapoda: Pseudothelphusidae, Trichodactylidae) in the Rio Xingu, Amazon Region, Brazil, with description of a new species of Pseudothephusidae. Amazoniana, 17, 377–386.
   Google Scholar
• Magalhães, C. (2009). A new species of freshwater crab of the genus Fredius Pretzmann, 1967 from the middle Amazon River basin, Brazil (Crustacea: Decapoda: Pseudothelphusidae). Proceedings of the Biological Society of Washington, 122(1), 81–86. https://doi.org/10.2988/08-35.1
   Web of Science ®Google Scholar
• Magalhães, C. (2017). A new genus and species of freshwater crab (Decapoda: Pseudothelphusidae) from the Tapajós River, a southern tributary of the Amazon River in Brazil. Crustaceana, 90(7-10), 1015–1025. https://doi.org/10.1163/15685403-00003641
   Web of Science ®Google Scholar
• Magalhães, C., Barbosa, U. C., & Py-Daniel, V. (2006). Decapod crustaceans used as food by the Yanomami Indians of the Balawa-ú village, State of Amazonas, Brazil. Acta Amazonica, 36(3), 369–374. https://doi.org/10.1590/S0044-59672006000300013
   Google Scholar
• Magalhães, C., & Pereira, G. (2007). Assessment of the decapod crustacean diversity in the Guayana Shield region aiming at conservation decisions. Biota Neotropica, 7(2), 111–124. https://doi.org/10.1590/S1676-06032007000200013
   Google Scholar
• Magalhães, C., & Rodríguez, G. (2002). The systematic and biogeographical status of Fredius reflexifrons (Ortmann, 1897) and Fredius fittkaui (Bott, 1967) (Crustacea: Brachyura: Pseudothelphusidae) from the Amazon and Atlantic Guianas river basins. Acta Amazonica, 32(4), 677–689.
   Google Scholar
• Magalhães, C. & Türkay, M. (2010). A new freshwater crab of the genus Brasiliothelphusa Magalhães & Türkay, 1986 from rio Aripuanã, southern Amazon region, Brazil. (Crustacea: Decapoda: Pseudothelphusidae). Nauplius, 18(2), 103–108. http://crustacea.org.br/wp-content/uploads/2014/02/nauplius-v18n2a01.Magalhaesturkay.pdf
   Google Scholar
• Magalhães, C., Abrunhosa, F. A., Pereira, M. O., & Melo, M. A. (2005). New records of Fredius denticulatus (H. Milne-Edwards, 1853) and F. reflexifrons (Ortmann, 1897), and the eastern limits of the distribution of pseudothelphusid crabs (Crustacea: Decapoda) in Brazil. Acta Amazonica, 35(1), 93–96. https://doi.org/10.1590/S0044-59672005000100014
   Google Scholar
• Magalhães, C., Campos, M. R., Collins, P. A., & Mantelatto, F. L. (2016). Diversity, Distribution and Conservation of Freshwater Crabs and Shrimps in South America. In T. Kawai & N. Cumberlidge (Eds.), A Global Overview of the Conservation of Freshwater Decapod Crustaceans (Chapter 11, 303–322). Springer International Publishing AG.
   Google Scholar
• Magalhães, C., Sanches, V. Q. A., Pileggi, L. G., & Mantelatto, F. L. (2014). Morphological and molecular characterization of a new species of Fredius (Decapoda, Pseudothelphusidae) from Rondonia, southern Amazonia, Brazil. In D. C. J. Yeo, N. Cumberlidge & S. Klaus (Eds.), Advances in Freshwater Decapod Systematics and Biology (pp. 101–114). Brill.
   Google Scholar
• Mantelatto, F. L., Robles, R., & Felder, D. L. (2007). Molecular phylogeny of the Western Atlantic species of the genus Portunus (Crustacea, Brachyura, Portunidae). Zoological Journal of the Linnean Society, 150(1), 211–220. https://doi.org/10.1111/j.1096-3642.2007.00298.x
   Web of Science ®Google Scholar
• Mantelatto, F. L., Carvalho, F. L., Simões, S. M., Negri, M., Souza-Carvalho, E. A., & Terossi, M. (2016). New primers for amplification of cytochrome c oxidase subunit I barcode region designed for species of Decapoda (Crustacea). Nauplius, 24(0), e2016030. https://doi.org/10.1590/2358-2936e2016030
   Google Scholar
• Mantelatto, F. L., Terossi, M., Negri, M., Buranelli, R. C., Robles, R., Magalhães, T., Tamburus, A. F., Rossi, N., & Miyazaki, M. J. (2018). DNA sequence database as a tool to identify decapod crustaceans on the São Paulo coastline. Mitochondrial DNA. Part A, DNA Mapping, Sequencing, and Analysis, 29(5), 805–815. https://doi.org/10.1080/24701394.2017.1365848
   PubMedGoogle Scholar
• Martins, C. A. M., Nascimento, W. M., Santos, L. C., Magalhães, C., & Pinheiro, A. P. (2021). A new species of the genus Fredius Pretzmann, 1967 (Decapoda: Brachyura: Pseudothelphusidae) from the state of Rondônia, Brazil, with comments on the southerly distribution of the family. Zootaxa, 4903(2), zootaxa.4903.2.8–295. https://doi.org/10.11646/zootaxa.4903.2.8
   Web of Science ®Google Scholar
• Miller, M. A., Pfeiffer, W., & Schwartz, T. (2010 Creating the CIPRES Science Gateway for inference of large phylogenetic trees [Paper presentation]. 2010 Gateway Computing Environments Workshop (GCE), New Orleans, LA, USA. In: (pp. 1–8)
   Google Scholar
• Milne Edwards, H. (1853). Memoire sur la Famille des Ocypodien. Annales Des Sciences Naturelles, Zoologie, 20(3e série), 163–228.
   Google Scholar
• Nascimento, F. A., Gomes, A. A. T., Salgado, A. A. R., & Tavares, S. S. Jr., (2019). Evidences of rearrangement of drainage in the upper Branco river Basin, Amazon. Publicações da Associação Portuguesa de Geomorfólogos, 11, 83–86.
   Google Scholar
• Nguyen, L. T., Schmidt, H. A., Von Haeseler, A., & Minh, B. Q. (2015). IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies. Molecular Biology and Evolution, 32(1), 268–274. https://doi.org/10.1093/molbev/msu300
   PubMed Web of Science ®Google Scholar
• Ortmann, A. E. (1893). Die Decapoden-Krebse des Strassburger Museums, mit besonderer Berücksichtigung der von Herrn Dr. Döderlein bei Japan und bei den Liu-Kiu-Inseln gesammelten und zur Zeit im Strassburger Museum aufbewahrten Formen. VII. Theil. Abtheilung: Brachyura (Brachyura genuina Boas) II. Unterabtheilung: Cancroidea, 2. Section: Cancrinea, 1. Gruppe: Cyclometopa. Zoologische Jahrbücher. Abteilung für Systematik, Geographie und Biologie der Thiere, 7(3), 411–495, pl. 17. https://decapoda.nhm.org/pdfs/10704/10704.pdf
   Google Scholar
• Ortmann, A. (1897). Carcinologische Studien. Zoologische JaarbüCher, Abteilung Für Systematik, Geographie Und Biologie Der Tiere, 10, 258–372.
   Google Scholar
• Palumbi, S. R., Martin, A., Romano, S., McMillan, W. O., Stice, L., & Grabowski, G. (1991). The simple fool's guide to PCR, Version 2. University of Hawaii Zoology Department.
   Google Scholar
• Pedraza, M., Tavares, M., & Magalhães, C. (2016). A new genus of freshwater crab of the tribe Kingsleyini Bott, 1970 (Crustacea: Decapoda: Brachyura: Pseudothelphusidae) with description of a new species from Mato Grosso, Brazil. Zootaxa, 4173(1), 94–100. https://doi.org/10.11646/zootaxa.4173.1.9
   PubMed Web of Science ®Google Scholar
• Pileggi, L. G., & Mantelatto, F. L. (2010). Molecular phylogeny of the freshwater prawn genus Macrobrachium (Decapoda, Palaemonidae), with emphasis on the relationships among selected American species. Invertebrate Systematics, 24(2), 194–208. https://doi.org/10.1071/IS09043
   Web of Science ®Google Scholar
• Pileggi, L. G., Rossi, N., Wehrtmann, I. S., & Mantelatto, F. L. (2014). Molecular perspective on the American transisthmian sister of Macrobrachium (Caridea, Palaemonidae). Zookeys, 457, 109–131. https://doi.org/10.3897/zookeys.457.6818.
   Google Scholar
• Poettinger, T. S., Klaus, S., & Schubart, C. D. (2016). Phylogenetic relationships among neotropical freshwater crabs of the Pseudothelphusidae (Decapoda, Brachyura) and the taxonomic position of Ptychophallus and related genera. Crustaceana, 89(14), 1717–1728. https://doi.org/10.1163/15685403-00003627.
   Google Scholar
• Pretzmann, G. (1967). Über einigue südamerikanische Süßwasserkrabben (Pseudothelphusidae). Vorläufige Mitteilung. Entomologische Nachrichtenblatt (Wien), 14(2), 23–26. https://www.zobodat.at/pdf/EN_14_2_1967_0023-0026.pdf
   Google Scholar
• Pretzmann, G. (1968). Neue südamerikanische Susswasserkrabben der Gattung Pseudothelpkusa. Entomologisches Nachrichtenblatt, 15(1), 1–15.
   Google Scholar
• Randall, J. W. (1840). Catalogue of the Crustacea brought by Thomas Nuttall and J.K. Townsend, from the West Coast of North America and the Sandwich Islands, with descriptions of such species as are apparently new, among which are included several species of different localities, previously existing in the collection of the Academy. Journal of the Academy of natural Sciences of Philadelphia, 8(1), 106–147, pls. 3–7. https://doi.org/10.5962/bhl.title.119921
   Google Scholar
• Rathbun, M. J. (1896). Descriptions of two new species of fresh-water crabs from Costa Rica. Proceedings of the United States National Museum, 18(1071), 377–379, pls. XIX–XXX. http://dx.doi.org/10.5479/si.00963801.18-1071.377
   Google Scholar
• Rathbun, M. J. (1898). A contribution to a knowledge of the fresh-water crabs of America. The Pseudothelphusinæ. Proceedings of the United States National Museum, 21(1158), 507–537. https://doi.org/10.5479/si.00963801.21-1158.507
   Google Scholar
• Rathbun, M. J. (1905). Les crabes d’eau douce. Nouvelles Archives du Muséum d’Histoire naturelle, Paris, 7(4), 159–321, text-figs. 38–105, volume pls. 13–22 (pls. XI–X for Rathbun’s article). https://www.biodiversitylibrary.org/item/112422#page/179/mode/1up
   Google Scholar
• Rathbun, M. J. (1919). Three new South American River crabs. Proceedings of the Biological Society of Washington, 32, 5–6. https://www.biodiversitylibrary.org/page/3335227#page/25/mode/1up
   Google Scholar
• Rodríguez, G. (1966). Three new species of Pseudothelphusa from Venezuela (Crustacea Brachyura Potamonidae). Zoologische Mededelingen, 41(19), 259–267.
   Google Scholar
• Rodríguez, G. (1980). Description préliminaire de quelques espèces et genres nouveaux de Crabes d’eau douce de l’Amerique tropicale (Crustacea, Decapoda, Pseudothelphusidae). Bulletin of the Museum of Natural History, Paris, 4e Sér, 2(section A)3), 889–894.
   Google Scholar
• Rodríguez, G. (1982). Les crabes d’eau douce d’Amerique. Famille des Pseudothelphusidae (pp. 1–224, Faune Tropicale: 22). Editions de l’ORSTOM.
   Google Scholar
• Rodríguez, G., & Campos, M. R. (1998). A cladistic revision of the genus Fredius (Crustacea: Decapoda: Pseudothelphusidae) and its significance to the biogeography of the Guiana lowlands of South America. Journal of Natural History, 32(5), 763–775. https://doi.org/10.1080/00222939800770391
   Web of Science ®Google Scholar
• Rodríguez, G., & Pereira, G. (1992). New species, cladistic relationships and biogeography of the genus Fredius (Crustacea; Decapoda: Pseudothelphusidae) from South America. Journal of Crustacean Biology, 12(2), 298–311. https://doi.org/10.2307/1549082
   Web of Science ®Google Scholar
• Rodríguez, G., & Suárez, H. (1994). Fredius stenolobus, a new species of freshwater crab (Decapoda: Brachyura: Pseudothelphusidae) from the Venezuelan Guiana. Proceedings of the Biological Society of Washington, 107(1), 132–136.
   Web of Science ®Google Scholar
• Ronquist, F., Teslenko, M., van der Mark, P., Ayres, D. L., Darling, A., Höhna, S., Larget, B., Liu, L., Suchard, M. A., & Huelsenbeck, J. P. (2012). MrBayes 3.2: Efficient bayesian phylogenetic inference and model choice across a large model space. Systematic Biology, 61(3), 539–542. https://doi.org/10.1093/sysbio/sys029
   PubMed Web of Science ®Google Scholar
• Santos, L. C., Tavares, M., Silva, J. R. F., Cervini, M., Pinheiro, A. P., & Santana, W. (2020). A new species of freshwater crab (Crustacea: Brachyura: Pseudothelphusidae) from a naturally isolated orographic forest enclave within the semiarid Caatinga in Ceará, northeastern Brazil. PeerJ, 8, e9370. https://doi.org/10.7717/peerj.9370
   PubMed Web of Science ®Google Scholar
• Schaefer, C. E. R., & Vale, J. F. Júnior, (1999). Mudanças climáticas e evolução da paisagem em Roraima: uma resenha do Cretáceo ao Recente. In R. I. Barbosa, E. G. G. Ferreira & E. G. Castellón (Eds.), Homem, Ambiente e Ecologia no Estado de Roraima. (pp. 231–265). Instituto Nacional de Pesquisas da Amazônia.
   Google Scholar
• Schubart, C. D., Neigel, J. E., & Felder, D. L. (2000). Use of the mitochondrial 16S rRNA gene for phylogenetic and population studies of Crustacea. Crustacean Issues, 12, 817–830.
   Google Scholar
• Souza-Carvalho, E. A., Magalhães, C., & Mantelatto, F. L. (2017). Molecular phylogeny of the Trichodactylus fluviatilis Latreille, 1828 (Brachyura: Trichodactylidae) species complex. Journal of Crustacean Biology, 37(2), 187–194. https://doi.org/10.1093/jcbiol/rux005
   Web of Science ®Google Scholar
• Suárez, H. (2015). Six New Species of Freshwater Crabs from Pantepui, Venezuela (Crustacea: Decapoda: Pseudothelphusidae). Anartia, 25, 64–94.
   Google Scholar
• Tamura, K., Stecher, G., Peterson, D., Filipski, A., & Kumar, S. (2013). MEGA6: Molecular Evolutionary Genetics Analysis version 6.0. Molecular Biology and Evolution, 30(12), 2725–2729.
   PubMed Web of Science ®Google Scholar
• Zanetti, F., Castro, P. M., & Magalhães, C. (2018). Freshwater crabs (Decapoda: Brachyura) from the state of Roraima, Brazil: specific composition, distribution and new records. Nauplius, 26(0), e2018011. https://doi.org/10.1590/2358-2936e2018011
   Google Scholar