Traditional taxonomy underestimates the number of species of Bokermannohyla (Amphibia: Anura: Hylidae) diverging in the mountains of southeastern Brazil since the Miocene

References

• Almeida-Abreu, P. A., & Renger, F. E. (2002). Serra do Espinhaço Meridional: um orógeno de colisão do Mesoproterozóico. Revista Brasileira de Geociências, 32, 1–14. https://doi.org/10.25249/0375-7536.20023210114
   Google Scholar
• Bell, R. C., MacKenzie, J. B., Hickerson, M. J., Chavarría, K. L., Cunningham, M., Williams, S., & Moritz, C. (2012). Comparative multi-locus phylogeography confirms multiple vicariance events in co-distributed rainforest frogs. Proceedings. Biological Sciences, 279, 991–999. https://doi.org/10.1098/rspb.2011.1229
   PubMed Web of Science ®Google Scholar
• Bokermann, W. C. A., & Sazima, I. (1973). Anfíbios da Serra do Cipó, Minas Gerais, Brasil. 1—Espécies novas de Hyla (Anura, Hylidae). Revista Brasileira Biologia, 33, 329–336.
   Google Scholar
• Bouckaert, R., Heled, J., Kühnert, D., Vaughan, T., Wu, C.-H., Xie, D., Suchard, M. A., Rambaut, A., & Drummond, A. J. (2014). BEAST 2: A software platform for Bayesian evolutionary analysis. PLoS Computational Biology, 10, e1003537. https://doi.org/10.1371/journal.pcbi.1003537
   PubMed Web of Science ®Google Scholar
• Bouckaert, R., Vaughan, T. G., Barido-Sottani, J., Duchêne, S., Fourment, M., Gavryushkina, A., Heled, J., Jones, G., Kühnert, D., De Maio, N., Matschiner, M., Mendes, F. K., Müller, N. F., Ogilvie, H. A., Du Plessis, L., Popinga, A., Rambaut, A., Rasmussen, D., Siveroni, I., … Drummond, A. J. (2019). BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis. PLoS Computational Biology, 15, e1006650. https://doi.org/10.1371/journal.pcbi.1006650
   PubMed Web of Science ®Google Scholar
• Brunes, T. (2022). Mitochondrial 16S rDNA alignment used to perform phylogenetic analysis of Bokermannohyla (Amphibia: Anura). Figshare. Dataset. https://doi.org/10.6084/m9.figshare.20522382.v1
   Google Scholar
• Carrijo, T. T., Alves-Araújo, A. G., Amorim, A. M. A., Barbosa, D. E. F., Barcelos, L. B., Baumgratz, J. F., Bevilacqua, T. F., Bueno, V. R., Coelho, R. L. G., Costa, D. P., Couto, D. R., Delgado, C. N., Dutra, V. F., Ferreira, D. M., Furtado, S. G., Gioacomin, L. L., Goldenberg, R., Gomes, M., Gonzaga, D. R., … Forzza, R. C. (2018). Lista de espécies de plantas terrestres do Parque Nacional do Itatiaia. In: Catálogo de Plantas das Unidades de Conservação do Brasil. Jardim Botânico do Rio de Janeiro. Catálogo de Plantas das Unidades de Conservação do Brasil. https://catalogo-ucs-brasil.jbrj.gov.br
   Google Scholar
• Carvalho, T. R., Giaretta, A. A., & Magrini, L. (2012). A new species of the Bokermannohyla circumdata group (Anura: Hyidae) from southeastern Brazil, with bioacoustic data on seven species of the genus. Zootaxa, 3321, 37–55. https://doi.org/10.11646/zootaxa.3321.1.3
   Google Scholar
• Carvalho, T. R., Seger, K. R., Magalhães, F. M., Lourenço, L. B., & Haddad, C. F. B. (2021). Systematics and cryptic diversification of Leptodactylus frogs in the Brazilian campo rupestre. Zoologica Scripta, 50, 300–317. https://doi.org/10.1111/zsc.12470
   Web of Science ®Google Scholar
• Chenuil, A., Cahill, A. E., Délémontey, N., Du Salliant Du Luc, E., & Fanton, H. (2019). Problems and questions posed by cryptic species: A framework to guide future studies. In E. Casetta, J. Marques da Silva, & D. Vecchi (Eds.), From assessing to conserving biodiversity: Conceptual and practical challenges (pp. 77–106) Springer International Publishing.
   Google Scholar
• Core Team, R. (2021). R: A language and environment for statistical computing. R Foundation for Statistical Computing. Austria. https://www.R-project.org/.
   Google Scholar
• De Queiroz, K. (1998). The general lineage concept of species, species criteria, and the process of speciation: A conceptual unification and terminological recommendations. In D. J. Howard & S. H. Berlocher (Eds.), Species and speciation (pp. 57–75) Oxford University Press.
   Google Scholar
• De Queiroz, K. (2007). Species concepts and species delimitation. Systematic Biology, 56, 879–886. https://doi.org/10.1080/10635150701701083
   PubMed Web of Science ®Google Scholar
• Dolman, G., & Phillips, B. (2004). Single copy nuclear DNA markers characterized for comparative phylogeography in Australian wet tropics rainforest skinks. Molecular Ecology Notes, 4, 185–187. https://doi.org/10.1111/j.1471-8286.2004.00609.x
   Google Scholar
• Drummond, A. J., & Rambaut, A. (2007). BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evolutionary Biology, 7, 214. https://doi.org/10.1186/1471-2148-7-214
   PubMed Web of Science ®Google Scholar
• Duellman, W. E., Marion, A. B., & Hedges, S. B. (2016). Phylogenetics, classification, and biogeography of the treefrogs (Amphibia: Anura: Arboranae). Zootaxa, 4104, 1–109. https://doi.org/10.11646/zootaxa.4104.1.1
   PubMed Web of Science ®Google Scholar
• Edwards, S. V., & Beerli, P. (2000). Perspective: Gene divergence, population divergence, and the variance in coalescence time in phylogeographic studies. Evolution; International Journal of Organic Evolution, 54, 1839–1854. https://doi.org/10.1111/j.0014-3820.2000.tb01231.x
   PubMed Web of Science ®Google Scholar
• Eterovick, P. C., & Sazima, I. (2004). Amphibians from the Serra do Cipó. Editora PUC Minas.
   Google Scholar
• Ezard, T., Fujisawa, T., & Barraclough, T. G. (2009). Splits: Species limits by threshold statistics (version 1.0-19).
   Google Scholar
• Faivovich, J., Haddad, C. F. B., Garcia, P. C. A., Frost, D. R., Campbell, J. A., & Wheeler, W. C. (2005). Systematic review of the frog family Hylidae, with special reference to Hylinae: Phylogenetic analysis and taxonomic revision. Bulletin of the American Museum of Natural History, 294, 1. https://doi.org/10.1206/0003-0090(2005)294[0001:SROTFF2.0.CO;2]
   Web of Science ®Google Scholar
• Felsenstein, J. (2005). PHYLIP (Phylogeny Inference Package) version 3.6. Distributed by the Author. Department of Genome Sciences, University of Washington.
   Google Scholar
• Fick, S. E., & Hijmans, R. J. (2017). WorldClim 2: New 1‐km spatial resolution climate surfaces for global land areas. International Journal of Climatology, 37, 4302–4315. https://doi.org/10.1002/joc.5086
   Web of Science ®Google Scholar
• Flouri, T., Rannala, B., & Yang, Z. (2020). A Tutorial on the use of BPP for species tree estimation and species delimitation. In C. Scornavacca, F. Delsuc, & N. Galtier (Eds.), Phylogenetics in the genomic era (pp. 5.6:1–5.6:16) Authors Open Access Book.
   Google Scholar
• Fouquet, A., Gilles, A., Vences, M., Marty, C., Blanc, M., & Gemmell, N. J. (2007). Underestimation of species richness in neotropical frogs revealed by mtDNA analyses. PloS One, 2, e1109. https://doi.org/10.1371/journal.pone.0001109
   PubMed Web of Science ®Google Scholar
• Fu, Y.-X. (1997). Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. Genetics, 147, 915–925. https://doi.org/10.1093/genetics/147.2.915
   PubMed Web of Science ®Google Scholar
• Fujisawa, T., & Barraclough, T. G. (2013). Delimiting species using single-locus data and the generalized mixed Yule coalescent approach: A revised method and evaluation on simulated data sets. Systematic Biology, 62, 707–724. https://doi.org/10.1093/sysbio/syt033
   PubMed Web of Science ®Google Scholar
• Garnica, S., Schön, M. E., Abarenkov, K., Riess, K., Liimatainen, K., Niskanen, T., Dima, B., Soop, K., Frøslev, T. B., Jeppesen, T. S., Peintner, U., Kuhnert-Finkernagel, R., Brandrud, T. E., Saar, G., Oertel, B., & Ammirati, J. F. (2016). Determining threshold values for barcoding fungi: Lessons from Cortinarius (Basidiomycota), a highly diverse and widespread ectomycorrhizal genus. FEMS Microbiology Ecology, 92, fiw045.
   PubMed Web of Science ®Google Scholar
• Giulietti, A. M., Menezes, N. L., Pirani, J. R., Meguro, M., & Wanderley, M. G. L. (1987). Flora da Serra do Cipó, Minas Gerais: Caracterização e lista das espécies. Boletim de Botânica, 9, 1–151. https://doi.org/10.11606/issn.2316-9052.v9i0p1-151
   Google Scholar
• Gontijo-Pascutti, A. H. F., Hasui, Y., Santos, M., Soares, A. V., & Souza, I. A. (2012). As serras do Mar e da Mantiqueira. In Y. Hasui, C. D. R. Carneiro, F. F. M. Almeida, & A. Bartorelli (Eds.), Geologia do Brasil. (pp. 549–571). Beca Press.
   Google Scholar
• Hammer, Ø., Harper, D. A. T., & Ryan, P. D. (2001). PAST: Paleontological statistics software package for education and data analysis. Palaeontologia Electronica, 4, 9.
   Google Scholar
• Hasan, M., Islam, M. M., Khan, M. R., Alam, M. S., Kurabayashi, A., Igawa, T., Kuramoto, M., & Sumida, M. (2012). Cryptic anuran biodiversity in Bangladesh revealed by mitochondrial 16S rRNA gene sequences. Zoological Science, 29, 162–172. https://doi.org/10.2108/zsj.29.162
   PubMed Web of Science ®Google Scholar
• Hillis, D. M., & Bull, J. J. (1993). An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis. Systematic Biology, 42, 182–192. https://doi.org/10.1093/sysbio/42.2.182
   Web of Science ®Google Scholar
• Hoorn, C., Perrigo, A., & Antonelli, A. (2018). Mountains, climate and biodiversity. John Wiley & Sons.
   Google Scholar
• Hopper, S. D. (2009). OCBIL theory: towards an integrated understanding of the evolution, ecology and conservation of biodiversity on old, climatically buffered, infertile landscapes. Plant and Soil, 322, 49–86. https://doi.org/10.1007/s11104-009-0068-0
   Web of Science ®Google Scholar
• Hopper, S. D. (2018). Natural hybridization in the context of Ocbil theory. South African Journal of Botany, 118, 284–289. https://doi.org/10.1016/j.sajb.2018.02.410
   Google Scholar
• Hopper, S. D., Silveira, F. A. O., & Fiedler, P. L. (2016). Biodiversity hotspots and Ocbil theory. Plant and Soil, 403, 167–216. https://doi.org/10.1007/s11104-015-2764-2
   Web of Science ®Google Scholar
• Huang, C. L., Chen, J. H., Chang, C. T., Chung, J. D., Liao, P. C., Wang, J. C., & Hwang, S. Y. (2016). Disentangling the effects of isolation-by-distance and isolation-by-environment on genetic differentiation among Rhododendron lineages in the subgenus Tsutsusi. Tree Genetics & Genomes, 12, 1–22. https://doi.org/10.1007/s11295-016-1010-2
   Web of Science ®Google Scholar
• Huelsenbeck, J. P., & Ronquist, F. (2001). MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics (Oxford, England), 17, 754–755. https://doi.org/10.1093/bioinformatics/17.8.754
   PubMed Web of Science ®Google Scholar
• Huson, D. H., & Bryant, D. (2006). Application of phylogenetic networks in evolutionary studies. Molecular Biology and Evolution, 23, 254–267. https://doi.org/10.1093/molbev/msj030
   PubMed Web of Science ®Google Scholar
• Joly, S., & Bruneau, A. (2006). Incorporating allelic variation for reconstructing the evolutionary history of organisms from multiple genes: An example from Rosa in North America. Systematic Biology, 55, 623–636. https://doi.org/10.1080/10635150600863109
   PubMed Web of Science ®Google Scholar
• Katoh, K., & Standley, D. M. (2013). MAFFT multiple sequence alignment software version 7: Improvements in performance and usability. Molecular Biology and Evolution, 30, 772–780. https://doi.org/10.1093/molbev/mst010
   PubMed Web of Science ®Google Scholar
• Katoh, K., Misawa, K., Kuma, K.-I., & Miyata, T. (2002). MAFFT: A novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Research, 30, 3059–3066. https://doi.org/10.1093/nar/gkf436
   PubMed Web of Science ®Google Scholar
• Kumar, S., Stecher, G., & Tamura, K. (2016). MEGA7: Molecular evolutionary genetics analysis version 7.0 for bigger datasets. Molecular Biology and Evolution, 33, 1870–1874. https://doi.org/10.1093/molbev/msw054
   PubMed Web of Science ®Google Scholar
• Leaché, A. D., & Fujita, M. K. (2010). Bayesian species delimitation in West African forest geckos (Hemidactylus fasciatus). Proceedings. Biological Sciences, 277, 3071–3077. https://doi.org/10.1098/rspb.2010.0662
   PubMed Web of Science ®Google Scholar
• Leite, F. S. F., Juncá, F. A., & Eterovick, P. C. (2008). Status do conhecimento, endemismo e conservação de anfíbios anuros da Cadeia do Espinhaço. Brasil. Megadiversidade, 4, 182–200.
   Google Scholar
• Leite, F. S. F., Pezzuti, T. L., & Drummond, L. O. (2011). A new species of Bokermannohyla from the Espinhaço range, state of Minas Gerais, Southeastern Brazil. Herpetologica, 67, 440–448. https://doi.org/10.1655/HERPETOLOGICA-D-11-00017.1
   Web of Science ®Google Scholar
• Leite, F. S. F., Pezzuti, T. L., & Viana, P. L. (2006). Amphibia, Bokermannohyla nanuzae, Scinax curicica, Leptodactylus camaquara, Physalaemus evangelistai, and Proceratophrys cururu: Distribution extensions. Check List, 2, 5. https://doi.org/10.15560/2.1.5
   Google Scholar
• Lemmon, E. M., Lemmon, A. R., & Cannatella, D. C. (2007). Geological and climatic forces driving speciation in the continentally distributed trilling chorus frogs (Pseudacris). Evolution; International Journal of Organic Evolution, 61, 2086–2103.
   PubMed Web of Science ®Google Scholar
• Librado, P., & Rozas, J. (2009). DnaSP v5: A software for comprehensive analysis of DNA polymorphism data. Bioinformatics (Oxford, England), 25, 1451–1452. https://doi.org/10.1093/bioinformatics/btp187
   PubMed Web of Science ®Google Scholar
• Lima, N. G. S., Gontijo, A. S. B., & Eterovick, P. C. (2014). Breeding behaviour of Bokermannohyla nanuzae (Anura: Hylidae) at an Atlantic Forest site in southeastern Brazil. Journal of Natural History, 48, 1439–1452. https://doi.org/10.1080/00222933.2013.840940
   Web of Science ®Google Scholar
• Lourenço, A. C. C., Assis, B., Baêta, D. C., Drummond, L. O., Pezzuti, T. L., & Pires, M. R. S. (2006). Geographic distribution: Bokermannohyla nanuzae. Herpetological Review, 37, 98.
   Google Scholar
• Magalhães, R. F., Lemes, P., Santos, M. T. T., Mol, R. M., Ramos, E. K. S., Oswald, C. B., Pezzuti, T. L., Santos, F. R., Brandão, R. A., & Garcia, P. C. A. (2021). Evidence of introgression in endemic frogs from the campo rupestre contradicts the reduced hybridization hypothesis. Biological Journal of the Linnean Society, 133, 561–576. https://doi.org/10.1093/biolinnean/blaa142
   Web of Science ®Google Scholar
• Milne, I., Wright, F., Rowe, G., Marshall, D. F., Husmeier, D., & McGuire, G. (2004). TOPALi: Software for automatic identification of recombinant sequences within DNA multiple alignments. Bioinformatics (Oxford, England), 20, 1806–1807. https://doi.org/10.1093/bioinformatics/bth155
   PubMed Web of Science ®Google Scholar
• Miola, D. T., Ramos, V. D., & Silveira, F. A. (2021). A brief history of research in campo rupestre: Identifying research priorities and revisiting the geographical distribution of an ancient, widespread Neotropical biome. Biological Journal of the Linnean Society, 133, 464–480. https://doi.org/10.1093/biolinnean/blaa175
   Web of Science ®Google Scholar
• Mittermeier, R. A., Gil, P. R., Hoffman, M., Pilgrim, J., Brooks, T., Mittermeier, C. G., Lamoreux, J., & Fonseca, G. A. B. (2005). Hotspots revisited: Earth’s biologically richest and most endangered terrestrial ecoregions. Sierra Madre Cemex and Conservation International.
   Google Scholar
• Napoli, M. F., & Caramaschi, U. (2004). Two new species of the Hyla circumdata group from Serra do Mar and Serra da Mantiqueira, southeastern Brazil, with description of the advertisement call of Hyla ibitipoca (Anura, Hylidae). Copeia, 2004, 534–545. https://doi.org/10.1643/CH-02-079R1
   Google Scholar
• Nascimento, A. C., Chaves, A. V., Leite, F. S. F., Eterovick, P. C., & Santos, F. R. D. (2018). Past vicariance promoting deep genetic divergence in an endemic frog species of the Espinhaço Range in Brazil: The historical biogeography of Bokermannohyla saxicola (Hylidae). PloS One, 13, e0206732. https://doi.org/10.1371/journal.pone.0206732
   PubMed Web of Science ®Google Scholar
• Oliveira, F. R., Gehara, M., Solé, M., Lyra, M., Haddad, C. F. B., Silva, D. P., Magalhães, R. F., Leite, F. S. F., & Burbrink, F. T. (2021). Quaternary climatic fluctuations influence the demographic history of two species of sky-island endemic amphibians in the Neotropics. Molecular Phylogenetics and Evolution, 160, 107113.
   PubMed Web of Science ®Google Scholar
• Oswald, C. B., Lemes, P., Thomé, M. T. C., Pezzuti, T. L., Santos, F. R., Garcia, P. C. A., Leite, F. S. F., & Magalhães, R. F. (2022). Colonization rather than fragmentation explains the geographical distribution and diversification of treefrogs endemic to Brazilian shield sky islands. Journal of Biogeography, 49, 682–698. https://doi.org/10.1111/jbi.14320
   Web of Science ®Google Scholar
• Palumbi, S. R., Martin, A., Romano, S., McMillan, W. O., Stice, L., & Grabowski, G. (1991). The simple fool’s guide to PCR: Version 2. Zoology Department and Kewalo Marine Laboratory. University of Hawaii.
   Google Scholar
• Perrigo, A., Hoorn, C., & Antonelli, A. (2020). Why mountains matter for biodiversity. Journal of Biogeography, 47, 315–325. https://doi.org/10.1111/jbi.13731
   Web of Science ®Google Scholar
• Pezzuti, T. L., Leite, F. S. F., Rossa-Feres, D. C., Garcia, P., & C., A. (2021). The tadpoles of the Iron Quadrangle, southeastern Brazil: A baseline for larval knowledge and anuran conservation in a diverse and threatened region. South America Journal of Herpetology, 22, 1–107.
   Web of Science ®Google Scholar
• Pinheiro, P. D. P., Pezzuti, T. L., Berneck, B. V. M., Lyra, M. L., Lima, R. C. L., & Leite, F. S. F. (2021). A new cryptic species of the Aplastodiscus albosignatus group (Anura: Hylidae). Salamandra, 57, 27–43.
   Web of Science ®Google Scholar
• Posada, D. (2008). jModelTest: Phylogenetic model averaging. Molecular Biology and Evolution, 25, 1253–1256. https://doi.org/10.1093/molbev/msn083
   PubMed Web of Science ®Google Scholar
• Puillandre, N., Brouillet, S., & Achaz, G. (2021). ASAP: Assemble species by automatic partitioning. Molecular Ecology Resources, 21, 609–620. https://doi.org/10.1111/1755-0998.13281
   PubMed Web of Science ®Google Scholar
• Puillandre, N., Lambert, A., Brouillet, S., & Achaz, G. (2012). ABGD, Automatic Barcode Gap Discovery for primary species delimitation. Molecular Ecology, 21, 1864–1877. https://doi.org/10.1111/j.1365-294X.2011.05239.x
   PubMed Web of Science ®Google Scholar
• Rahbek, C., Borregaard, M. K., Colwell, R. K., Dalsgaard, B. O., Holt, B. G., Morueta-Holme, N., Nogues-Bravo, D., Whittaker, R. J., & Fjeldså, J. (2019). Humboldt’s enigma: What causes global patterns of mountain biodiversity? Science (New York, N.Y.), 365, 1108–1113.
   PubMed Web of Science ®Google Scholar
• Rambaut, A., Drummond, A. J., Xie, D., Baele, G., & Suchard, M. A. (2018). Posterior summarization in Bayesian phylogenetics using Tracer 1.7. Systematic Biology, 67, 901–904.
   PubMed Web of Science ®Google Scholar
• Ramos, E. K. S., Magalhães, R. F., Marques, N. C. S., Baêta, D., Garcia, P. C. A., & Santos, F. R. (2019). Cryptic diversity in Brazilian endemic monkey frogs (Hylidae, Phyllomedusinae, Pithecopus) revealed by multispecies coalescent and integrative approaches. Molecular Phylogenetics and Evolution, 132, 105–116.
   PubMed Web of Science ®Google Scholar
• Rozas, J., Ferrer-Mata, A., Sánchez-DelBarrio, J. C., Guirao-Rico, S., Librado, P., Ramos-Onsins, S. E., & Sánchez-Gracia, A. (2017). DnaSP 6: DNA sequence polymorphism analysis of large data sets. Molecular Biology and Evolution, 34, 3299–3302. https://doi.org/10.1093/molbev/msx248
   PubMed Web of Science ®Google Scholar
• Rull, V. (2006). Quaternary speciation in the Neotropics. Molecular Ecology, 15, 4257–4259. https://doi.org/10.1111/j.1365-294X.2006.03052.x
   PubMed Web of Science ®Google Scholar
• Sabbag, A. F., Lyra, M. L., Zamudio, K. R., Haddad, C. F. B., Feio, R. N., Leite, F. S. F., Gasparini, J. L., & Brasileiro, C. A. (2018). Molecular phylogeny of neotropical rock frogs reveals a long history of vicariant diversification in the Atlantic forest. Molecular Phylogenetics and Evolution, 122, 142–156. https://doi.org/10.1016/j.ympev.2018.01.017
   PubMed Web of Science ®Google Scholar
• Sabbag, A. F., Thomé, M. T. C., Lyra, M. L., Brasileiro, C. A., Lemmon, E. M., Lemmon, A., & Haddad, C. F. B. (2022). Sympatric and independently evolving lineages in the Thoropa miliaris -T. taophora species complex (Anura: Cycloramphidae). Molecular Phylogenetics and Evolution, 166, 107220.
   PubMed Web of Science ®Google Scholar
• Safford, H. D. (1999). Brazilian Paramos I. An introduction to the physical environment and vegetation of the campos de altitude. Journal of Biogeography, 26, 693–712.
   Web of Science ®Google Scholar
• Santos, M. T. T., Magalhães, R. F., Lyra, M. L., Santos, F. R., Zaher, H., Giasson, L. O., M., Garcia, P. C. A., Carnaval, A. C., & Haddad, C. F. B. (2020). Multilocus phylogeny of Paratelmatobiinae (Anura: Leptodactylidae) reveals strong spatial structure and previously unknown diversity in the Atlantic Forest hotspot. Molecular Phylogenetics and Evolution, 148, 106819. https://doi.org/10.1016/j.ympev.2020.106819
   PubMed Web of Science ®Google Scholar
• Silva, E. T., Peixoto, M. A. A., Leite, F. S. F., Feio, R. N., & Garcia, P. C. A. (2018). Anuran distribution in a highly diverse region of the Atlantic Forest: The Mantiqueira Mountain Range in Southeastern Brazil. Herpetologica, 74, 294–305. https://doi.org/10.1655/0018-0831.294
   Web of Science ®Google Scholar
• Silveira, F. A. O., Negreiros, D., Barbosa, N. P. U., Buisson, E., Carmo, F. F., Carstensen, D. W., Conceição, A. A., Cornelissen, T. G., Echternacht, L., Fernandes, G. W., Garcia, Q. S., Guerra, T. J., Jacobi, C. M., Lemos-Filho, J. P., Le Stradic, S., Morellato, L. P. C., Neves, F. S., Oliveira, R. S., Schaefer, C. E., Viana, P. L., & Lambers, H. (2016). Ecology and evolution of plant diversity in the endangered campo rupestre: A neglected conservation priority. Plant and Soil, 403, 129–152. https://doi.org/10.1007/s11104-015-2637-8
   Web of Science ®Google Scholar
• Slatkin, M. (1987). The average number of sites separating DNA sequences drawn from a subdivided population. Theoretical Population Biology, 32, 42–49. https://doi.org/10.1016/0040-5809(87)90038-4
   PubMed Web of Science ®Google Scholar
• Slatkin, M. (1993). Isolation by distance in equilibrium and non-equilibrium populations. Evolution; International Journal of Organic Evolution, 47, 264–279. https://doi.org/10.1111/j.1558-5646.1993.tb01215.x
   PubMed Web of Science ®Google Scholar
• Stamatakis, A. (2014). RAxML version 8: A tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics (Oxford, England), 30, 1312–1313. https://doi.org/10.1093/bioinformatics/btu033
   PubMed Web of Science ®Google Scholar
• Stephens, M., Smith, N. J., & Donnelly, P. (2001). A new statistical method for haplotype reconstruction from population data. American Journal of Human Genetics, 68, 978–989. https://doi.org/10.1086/319501
   PubMed Web of Science ®Google Scholar
• Tajima, F. (1989). Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics, 123, 585–595. https://doi.org/10.1093/genetics/123.3.585
   PubMed Web of Science ®Google Scholar
• Thomé, M. T. C., Lyra, M. L., Lemes, P., Teixeira, L. S., Carnaval, A. C., Haddad, C. F. B., & Canedo, C. (2020). Outstanding diversity and microendemism in a clade of rare Atlantic forest montane frogs. Molecular Phylogenetics and Evolution, 149, 106813. https://doi.org/10.1016/j.ympev.2020.106813
   PubMed Web of Science ®Google Scholar
• Thomé, M. T. C., Zamudio, K. R., Haddad, C. F. B., & Alexandrino, J. (2012). Delimiting genetic units in Neotropical toads under incomplete lineage sorting and hybridization. BMC Evolutionary Biology, 12, 242. https://doi.org/10.1186/1471-2148-12-242
   PubMed Web of Science ®Google Scholar
• Tóth, E. G., Tremblay, F., Housset, J. M., Bergeron, Y., & Carcaillet, C. (2019). Geographic isolation and climatic variability contribute to genetic differentiation in fragmented populations of the long-lived subalpine conifer Pinus cembra L. in the western Alps. BMC Ecology and Evolution, 19, 190.
   Google Scholar
• Townsend, J. H., Firneno, T. J., Jr, Escoto, D. L., Flores-Girón, E. A., Medina-Flores, M., & Oyuela, O. W. (2015). The first record of the streamside frog craugastor rupinius (Anura: Craugastoridae) in Honduras, confirmed by 16S DNA barcoding. Alytes, 32, 55–58.
   Google Scholar
• Vacher, J., Chave, J., Ficetola, F. G., Sommeria‐Klein, G., Tao, S., Thébaud, C., Blanc, M., Camacho, A., Cassimiro, J., Colston, T. J., Dewynter, M., Ernst, R., Gaucher, P., Gomes, J. O., Jairam, R., Kok, P. J. R., Lima, J. D., Martinez, Q., Marty, C., … Fouquet, A. (2020). Large‐scale DNA‐based survey of frogs in Amazonia suggests a vast underestimation of species richness and endemism. Journal of Biogeography, 47, 1781–1791. https://doi.org/10.1111/jbi.13847
   Web of Science ®Google Scholar
• Vences, M., Thomas, M., van der Meijden, A., Chiari, Y., & Vieites, D. R. (2005). Comparative performance of the 16S rRNA gene in DNA barcoding of amphibians. Frontiers in Zoololgy, 2, 1–12. https://doi.org/10.1186/1742-9994-2-5
   PubMedGoogle Scholar
• Walker, M., Lourenço, A. C. C., Pimenta, B. V. S., & Nascimento, L. B. (2015). Morphological variation, advertisement call, and tadpoles of Bokermannohyla nanuzae (Bokermann, 1973), and taxonomic status of B. feioi (Napoli & Caramaschi, 2004) (Anura, Hylidae, Cophomantini). Zootaxa, 3937, 161–178.
   PubMed Web of Science ®Google Scholar
• Werneck, F. P., Gamble, T., Colli, G. R., Rodrigues, M. T., & Sites, J. W. (2012). Deep diversification and long-term persistence in the South American “dry diagonal”: Integrating continent-wide phylogeography and distribution modeling of geckos. Evolution; International Journal of Organic Evolution, 66, 3014–3034. https://doi.org/10.1111/j.1558-5646.2012.01682.x
   PubMed Web of Science ®Google Scholar
• Wisz, M. S., Hijmans, R. J., Li, J., Peterson, A. T., Graham, C. H., & Guisan, A, NCEAS Predicting Species Distributions Working Group. (2008). Effects of sample size on the performance of species distribution models. Diversity and Distributions, 14, 763–773. https://doi.org/10.1111/j.1472-4642.2008.00482.x
   Web of Science ®Google Scholar
• Yang, Z., Rannala, B. (2010). Bayesian species delimitation using multilocus sequence data. Proceedings of the National Academy of Sciences, 107, 9264––9269.
   Google Scholar