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Research Article

Molecular phylogeny of the genus Dorometra Clark, 1917 (Crinoidea: Comatulida: Antedonidae): a new genus and new insights for future taxonomic revisions of Antedonidae

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References

  • Arrigoni, R., Berumen, M. L., Chen, C. A., Terraneo, T. I., Baird, A. H., Payri, C., & Benzoni, F. (2016). Species delimitation in the reef coral genera Echinophyllia and Oxypora (Scleractinia, Lobophylliidae) with a description of two new species. Molecular Phylogenetics and Evolution, 105, 146–159. https://doi.org/10.1016/j.ympev.2016.08.023
  • Carpenter, P. H. (1888). Report on the Crinoidea collected during the Voyage of HMS Challenger during the years 1873–76. Part II. The Comatulae. Report on the Scientific Results of the Voyage of H.M.S. ‘Challenger.’—Zoology, Part LX, 26, 1–402. https://doi.org/10.1080/00222938909460379
  • Clark, A. H. (1907). Description of new species of recent unstalked crinoids from the North Pacific Ocean. Proceedings of the United States National Museum, 33, 69–84. https://doi.org/10.5479/si.00963801.33-1559.69
  • Clark, A. H. (1908a). Descriptions of new species of recent unstalked crinoids from the North Pacific Ocean. Proceedings of the United States National Museum, 33, 69–78. https://doi.org/10.5860/choice.486651
  • Clark, A. H. (1908b). The nomenclature of the recent crinoids. Proceedings of the United States National Museum, 34, 435–542.
  • Clark, A. H. (1908c). New genera of unstalked crinoids. Proceedings of the Biological Society of Washington, 21, 125–136. https://doi.org/10.1126/science.1.21.586-a
  • Clark, A. H. (1911). The recent crinoids of the coasts of Africa. Proceedings of the United States National Museum, 40, 1–51.
  • Clark, A. H. (1912). Descriptions of twenty new recent unstalked crinoids, belonging to the families Antedonidae and Atelecrinidae, from the Dutch East Indies. Proceedings of the United States National Museum, 34, 129–156. https://doi.org/10.5860/choice.48-6651
  • Clark, A. H. (1917). A revision of the crinoid family Antedonidae, with the diagnoses of nine new genera. Journal of the Washington Academy of Sciences, 7, 127–131.
  • Clark, A. H. (1918). The unstalked crinoids of the Siboga Expedition. E.J. Brill.
  • Clark, A. H. (1919). On a collection of feather stars, or comatulids, from Japan. Proceedings of the United States National Museum, 34, 305–352. https://doi.org/10.1103/PhysRevB.72.195312
  • Clark, A. H., & Clark, A. M. (1967). A monograph of the existing crinoids. Volume 1. The Comatulids. Part 5. Suborders Oligophreata (Concluded) and Macrophreata. Bulletin of the United States National Museum, 82, 1–860. https://doi.org/10.5962/bhl.title.1326
  • Cohen, B. L., & Pisera, A. (2018). Crinoid phylogeny: response to a challenge. Cahiers de Biologie Marine, 59, 53–59. https://doi.org/10.21411/CBM.A.30CDFDC6
  • Darriba, D., Taboada, G. L., Doallo, R., & Posada, D. (2012). jModelTest 2: more models, new heuristics and parallel computing. Natural Methods, 9, 772–772. https://doi.org/10.1038/nmeth.2109
  • De Domenico, F., Giacobbe, S., & Rinelli, P. (2009). The genus Antedon (Crinoidea, Echinodermata) in the Strait of Messina and the nearby Tyrrhenian Sea (Central Mediterranean). Italian Journal of Zoology, 76, 70–75. https://doi.org/10.1080/11250000802086011
  • Dellicour, S., & Flot, J. F. (2018). The hitchhiker’s guide to single-locus species delimitation. Molecular Ecology Resources, 18, 1234–1246. https://doi.org/10.1111/1755-0998.12908
  • Edgar, R. C. (2004). MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research, 32, 1792–1797. https://doi.org/10.1093/nar/gkh340
  • Edler, D., Klein, J., Antonelli, A., & Silvestro, D. (2020). raxmlGUI 2.0: a graphical interface and toolkit for phylogenetic analyses using RAxML. Methods in Ecology and Evolution, 12, 373–377. https://doi.org/10.1111/2041-210X.13512
  • Folmer, O., Black, M., Hoeh, W., Lutz, R., & Vrijenhoek, R. (1994). DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Molecular Marine Biology and Biotechnology, 3, 294–299.
  • Fontaneto, D., Herniou, E. A., Boschetti, C., Caprioli, M., Melone, G., Ricci, C., & Barraclough, T. G. (2007). Independently evolving species in asexual bdelloid rotifers. Public Library of Science Biology, 5, e87. https://doi.org/10.1371/journal.pbio.0050087
  • Foo, S. H., Taylor, K. H., Messing, C. G., Rouse, G. W., Tay, T. S., Tan, K. S., & Huang, D. (2021). Assessing the taxonomy of Heterometra-like feather stars (Echinodermata: Crinoidea: Himerometroidea) based on morphology and molecular data. Systematics and Biodiversity, 19, 632–647.
  • Fujisawa, T., & Barraclough, T. G. (2013). Delimiting species using single-locus data and the generalized mixed yule coalescent approach: a revised method and evaluation on simulated data sets. Systematic Biology, 62, 707–724. https://doi.org/10.1093/sysbio/syt033
  • Fujita, Y., Irimura, S., Kogure, Y., Okanishi, M., Michonneau, F., & Naruse, T. (2015). Catalogue of echinodermata specimens deposited in the university museum (Fujukan), University of the Ryukyus. University of the Ryukyus, 10, 1–106.
  • Gislén, T. (1922). The crinoids from DR. S. Bock’s expedition to Japan 1914. Berlings Boktryckerie.
  • Gislén, T. (1927). Papers from Dr. Th. Mortensen’s pacific expedition 1914–16. Japanese Crinoids. Videnskabelige Meddelelser Fra Dansk Naturhistorisk Forening i København, 83, 1–69.
  • Gouy, M., Guindon, S., & Gascuel, O. (2010). SeaView version 4: A multiplatform graphical user interface for sequence alignment and phylogenetic tree building. Molecular Biology and Evolution, 27, 221–224. https://doi.org/10.1093/molbev/msp259
  • Hays, B. (2016). Can skeletal morphology support new molecular phylogenies of Antedonidae (Crinoidea: Comatulida)? [Master’s thesis], Nova Southeastern University.
  • Helgen, L. E., & Rouse, G. W. (2006). Species delimitation and distribution in Aporometra (Crinoidea: Echinodermata): endemic Australian featherstars. Invertebrate Systematics, 20, 395. https://doi.org/10.1071/is05050
  • Hellal, A. M. (2012). Taxonomic study on the feather stars (Crinoidea: Echinodermata) from Egyptian Red Sea coasts and Suez Canal, Egypt. Open Journal of Marine Science, 2, 51. https://doi.org/10.4236/ojms.2012.22007
  • Hemery, L. G., Eléaume, M., Roussel, V., Améziane, N., Gallut, C., Steinke, D., Cruaud, C., Couloux, A., & Wilson, N. G. (2012). Comprehensive sampling reveals circumpolarity and sympatry in seven mitochondrial lineages of the Southern Ocean crinoid species Promachocrinus kerguelensis (Echinodermata). Molecular Ecology, 21, 2502–2518. https://doi.org/10.1111/j.1365-294X.2012.05512.x
  • Hemery, L. G., Roux, M., Améziane, N., & Eléaume, M. (2013). High-resolution crinoid phyletic inter-relationships derived from molecular data. Cahiers de Biologie Marine, 54, 511–523. https://doi.org/10.21411/CBM.A.1FE819C4
  • Hess, H., & Messing, C. G. (2011). Comatulida. In Treatise on Invertebrate Paleontology, Echinodermata, Part T, Echinodermata 2, Revised, Crinoidea (Vol. 3). University of Kansas Press, Lawrence, Kansas.
  • Huelsenbeck, J. P., & Ronquist, F. (2001). MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics, 17, 754–755. https://doi.org/10.1093/bioinformatics/17.8.754
  • Kogo, I. (1998). Crinoids from Japan and its adjacent waters. Special Publications from Osaka Museum of Natural History, 30, 1–148.
  • Kogo, I. (2002). Report on the crinoids collected from the Nansei Islands, southern Japan, during a cruise of the training vessel Toyoshio Maru in 1999 (Crinoidea). Bulletin of the Osaka Museum of Natural History, 56, 1–44.
  • Kogo, I., & Fujita, T. (2014). 相模湾産ウミシダ類. The Feather Stars of Sagami Bay. Tokai University Press.
  • Kogo, I., Fujita, T., & Kubodera, T. (2019). Shallow-water comatulids (Echinodermata: Crinoidea) from Ambon and Lombok Islands, Indonesia. Species Diversity, 24, 229–246. https://doi.org/10.12782/specdiv.24.229
  • Kumar, S., Stecher, G., Li, M., Knyaz, C., & Tamura, K. (2018). MEGA X: Molecular evolutionary genetics analysis across computing platforms. Molecular Biology and Evolution, 35, 1547–1549. https://doi.org/10.1093/molbev/msy096
  • Lanfear, R., Frandsen, P. B., Wright, A. M., Senfeld, T., & Calcott, B. (2017). PartitionFinder 2: new methods for selecting partitioned models of evolution for molecular and morphological phylogenetic analyses. Molecular Biology and Evolution, 34, 772–773. https://doi.org/10.1093/molbev/msw260
  • Larsson, A. (2014). AliView: a fast and lightweight alignment viewer and editor for large datasets. Bioinformatics, 30, 3276–3278. https://doi.org/10.1093/bioinformatics/btu531
  • Le, H. L., Lecointre, G., & Perasso, R. (1993). A 28S rRNA-based phylogeny of the gnathostomes: first steps in the analysis of conflict and congruence with morphologically based cladograms. Molecular Phylogenetics and Evolution, 2, 31–51. https://doi.org/10.1006/mpev.1993.1005
  • Liao, Y. L., & Clark, A. M. (1995). The echinoderms of southern China. Science Press.
  • Luo, A., Ling, C., Ho, S. Y. W., & Zhu, C. D. (2018). Comparison of methods for molecular species delimitation across a range of speciation scenarios. Systematic Biology, 67, 830–846. https://doi.org/10.1093/sysbio/syy011
  • Messing, C. G. (1981). Reclassification and redescription of the comatulid Comatonia cristata (Hartlaub) (Echinodermata: Crinoidea). Proceedings of the Biological Society of Washington, 94, 240–253.
  • Messing, C. G. (2007). The crinoid fauna (Echinodermata: Crinoidea) of Palau. Pacific Science, 61, 91–111. https://doi.org/10.1353/psc.2007.0010
  • Messing, C. G., Meyer, D. L., Siebeck, U. E., Jermiin, L. S., Vaney, D. I., & Rouse, G. W. (2006). A modern soft-bottom, shallow-water crinoid fauna (Echinodermata) from the Great Barrier Reef, Australia. Coral Reefs, 25, 164–168. https://doi.org/10.1007/s00338-005-0076-3
  • Messing, C. G., & Tay, T. S. (2016). Extant crinoidea (Echinodermata) of Singapore. Raffles Bulletin of Zoology, 34, 627–658.
  • Messing, C. G., & White, C. M. (2001). A revision of the Zenometridae (new rank) (Echinodermata, Crinoidea, Comatulidina). Zoologica Scripta, 30, 159–180. https://doi.org/10.1046/j.1463-6409.2001.00062.x
  • Meyer, D. L., & Macurda, D. B. (1980). Ecology and distribution of the shallow-water crinoids (Echinodermata) of the Palau Islands and Guam (Western Pacific). Micronesica, 16, 59–99.
  • Naughton, K. M., O’Hara, T. D., Appleton, B., & Gardner, M. G. (2014). Sympatric cryptic species in the crinoid genus Cenolia (Echinodermata: Crinoidea: Comasteridae) delineated by sequence and microsatellite markers. Molecular Phylogenetics and Evolution, 78, 160–171. https://doi.org/10.1016/j.ympev.2014.05.006
  • Nieto-Montes de Oca, A., Barley, A. J., Meza-Lázaro, R. N., García-Vázquez, U. O., Zamora-Abrego, J. G., Thomson, R. C., & Leaché, A. D. (2017). Phylogenomics and species delimitation in the knob-scaled lizards of the genus Xenosaurus (Squamata: Xenosauridae) using ddRADseq data reveal a substantial underestimation of diversity. Molecular Phylogenetics and Evolution, 106, 241–253. https://doi.org/10.1016/j.ympev.2016.09.001
  • Obuchi, M., Fujita, Y., Nakano, Y., Uehara, T., & Motokawa, T. (2010). Reproductive biology and early life history of the hermaphroditic feather star Dorometra sesokonis (Echinodermata: Crinoidea). Marine Biology, 157, 1191–1201. https://doi.org/10.1007/s00227-010-1399-3
  • Obuchi, M., Kogo, I., & Fujita, Y. (2009). A new brooding feather star of the genus Dorometra (Echinodermata: Crinoidea: Comatulida: Antedonidae) from the Ryukyu Islands, southwestern Japan. Zootaxa, 6, 61–68. https://doi.org/10.11646/zootaxa.2008.1.6
  • Obuchi, M., & Omori, A. (2015). A new genus and new species of family Antedonidae (Echinodermata: Crinoidea) from southern Japan. Zootaxa, 3972, 441–449. https://doi.org/10.11646/zootaxa.3972.3.9
  • Okonechnikov, K., Golosova, O., & Fursov, M. (2012). Unipro UGENE: a unified bioinformatics toolkit. Bioinformatics, 28, 1166–1167. https://doi.org/10.1093/bioinformatics/bts091
  • Oksanen, J., Blanchet, F. G., Friendly, M., et al. (2019). Vegan: Community Ecology Package. R package (version 2.5-5).
  • Palumbi, S. (1996). Nucleic acids II: polymerase chain reaction. In D. Hillis, C. Moritz, B. Mable, Molecular Systematics (2nd ed.). Sinauer Associates.
  • Porebski, S., Bailey, L. G., & Baum, B. R. (1997). Modification of a CTAB DNA extraction protocol for plants containing high polysaccharide and polyphenol components. Plant Molecular Biology Reporter, 15, 8–15. https://doi.org/10.1007/BF02772108
  • Puillandre, N., Lambert, A., Brouillet, S., & Achaz, G. (2012). ABGD, Automatic barcode gap discovery for primary species delimitation. Molecular Ecology, 21, 1864–1877. https://doi.org/10.1111/j.1365-294X.2011.05239.x
  • Rambaut, A. (2018). FigTree (v1.4.4).
  • Rambaut, A., Drummond, A. J., Xie, D., Baele, G., & Suchard, M. A. (2018). Posterior summarization in bayesian phylogenetics using Tracer 1.7. Systematic Biology, 67, 901–904. https://doi.org/10.1093/sysbio/syy032
  • Rannala, B., & Yang, Z. (2003). Bayes estimation of species divergence times and ancestral population sizes using DNA sequences from multiple loci. Genetics, 164, 1645–1656. https://doi.org/10.1093/genetics/164.4.1645
  • Ronquist, F., Teslenko, M., van der Mark, P., Ayres, D. L., Darling, A., Höhna, S., Larget, B., Liu, L., Suchard, M. A., & Huelsenbeck, J. P. (2012). MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Systematic Biology, 61, 539–542. https://doi.org/10.1093/sysbio/sys029
  • Rouse, G. W., Jermiin, L. S., Wilson, N. G., Eeckhaut, I., Lanterbecq, D., Oji, T., Young, C. M., Browning, T., Cisternas, P., Helgen, L. E., Stuckey, M., & Messing, C. G. (2013). Fixed, free, and fixed: the fickle phylogeny of extant Crinoidea (Echinodermata) and their Permian-Triassic origin. Molecular Phylogenetics and Evolution, 66, 161–181. https://doi.org/10.1016/j.ympev.2012.09.018
  • Roux, M. (1997). Classification and ontogeny in Crinoidea: necessity of a revision of characters hierarchy. Bulletin de la Societe Zoologique de France, 122, 371–378.
  • Roux, M., Eléaume, M., Hemery, L. G., & Améziane, N. (2013). When morphology meets molecular data in crinoid phylogeny: a challenge. Cahiers de Biologie Marine, 54, 541–548. https://doi.org/10.1016/j.ijrobp.2010.11.004
  • Rowe, F. W. E., & Gates, J. (1995). Zoological catalogue of Australia, 33: Echinodermata. CSIRO.
  • RStudio Team. (2020). RStudio: Integrated Development Environment for R
  • Saulsbury, J. (2020). Crinoid respiration and the distribution of energetic strategies among marine invertebrates. Biological Journal of the Linnean Society, 129, 244–258. https://doi.org/10.1093/biolinnean/blz167
  • Stöver, B. C., & Müller, K. F. (2010). TreeGraph 2: Combining and visualizing evidence from different phylogenetic analyses. BioMedCentral Bioinformatics, 11, 7. https://doi.org/10.1186/1471-2105-11-7
  • Suchard, M. A., Lemey, P., Baele, G., Ayres, D. L., Drummond, A. J., & Rambaut, A. (2018). Bayesian phylogenetic and phylodynamic data integration using BEAST 1.10. Virus Evolution, 4 vey016. https://doi.org/10.1093/ve/vey016
  • Summers, M. M., Messing, C. G., & Rouse, G. W. (2014). Phylogeny of Comatulidae (Echinodermata: Crinoidea: Comatulida): a new classification and an assessment of morphological characters for crinoid taxonomy. Molecular Phylogenetics and Evolution, 80, 319–339. https://doi.org/10.1016/j.ympev.2014.06.030
  • Summers, M. M., Messing, C. G., & Rouse, G. W. (2017). The genera and species of Comatulidae (Comatulida: Crinoidea): taxonomic revisions and a molecular and morphological guide. Zootaxa, 4268, 151–190. https://doi.org/10.11646/zootaxa.4268.2.1
  • Taylor, K. H., Rouse, G. W., & Messing, C. G. (2017). Systematics of Himerometra (Echinodermata: Crinoidea: Himerometridae) based on morphology and molecular data. Zoological Journal of the Linnean Society, 18, 342–356. https://doi.org/10.1093/zoolinnean/zlx009
  • Taylor, K. H., Rouse, G. W., & Messing, C. G. (2018). Revising Mariametridae: the genera Dichrometra, Lamprometra, and Liparometra (Echinodermata: Crinoidea). Systematics and Biodiversity, 16, 2, 142–159. https://doi.org/10.1080/14772000.2017.1375044
  • Utinomi, H., & Kogo, I. (1965). On some comatulids from the coastal sea of Kii Peninsula. Publications of the Seto Marine Biological Laboratory, 13, 263–286. https://doi.org/10.5134/175412
  • Virgili, R., Cerrano, C., Ponti, M., Lasut, M. T., & Reimer, J. D. (2020). Crinoid diversity and their symbiotic communities at Bangka Island (North Sulawesi, Indonesia). Marine Biodiversity, 50, 90. http://doi.org/10.1007/s12526-020-01097-1
  • WoRMS Editorial Board. (2021). World Register of Marine Species. http://www.marinespecies.org at VLIZ. Accessed 2021-08-12. https://doi.org/10.14284/170
  • Yang, Z. (2015). The BPP program for species tree estimation and species delimitation. Current Zoology, 61, 854–865. https://doi.org/10.1093/czoolo/61.5.854
  • Yang, Z., & Rannala, B. (2014). Unguided species delimitation using DNA sequence data from multiple loci. Molecular Biology and Evolution, 31, 3125–3135. https://doi.org/10.1093/molbev/msu279
  • Zhang, J., Kapli, P., Pavlidis, P., & Stamatakis, A. (2013). A general species delimitation method with applications to phylogenetic placements. Bioinformatics, 29, 2869–2876. https://doi.org/10.1093/bioinformatics/btt499
  • Zmarzly, D. L. (1984). Distribution and ecology of shallow-water crinoids at Enewetak Atoll Marshall Islands pacific ocean with an annotated checklist of their symbionts. Pacific Science, 38, 105–122.

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