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Research Article

Clarifying the identity of the Cleistes rosea complex (Orchidaceae) based on integrative taxonomy

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References

  • Aublet, J. B. C. F. (1775). Histoire des plantes de la Guiane Françoise (Vol. 2). Pierre-François Didot.
  • Camelo-Júnior, A. E., Ferreira, A. W., Andrade, I. M., Mayo, S. J., Nollet, F., Silva, J. L., Barros, M. C., Fraga, E., & Pessoa, E. M. (2022). Species delimitation in the Trichocentrum cepula (Oncidiinae, Orchidaceae) complex: A multidisciplinary approach. Systematics and Biodiversity, 20, 1–18. https://doi.org/10.1080/14772000.2022.2099478
  • Cameron, K. M. (2003). Cleistes. In A. M. Pridgeon, P. J. Cribb, M.W. Chase, & F. N. Rasmussen (Eds.), Genera orchidacearum: Vol. 3, part 2. Orchidoideae, Vanilloideae (pp. 286–289). Oxford University Press.
  • Campacci, M. A. (2011). Cleistes angeliana Campacci sp. nov. Coletânea De Orquídeas Brasileiras, 9, 324–327.
  • Carnevali, G., & Ramirez, I. (1990). New or noteworthy orchids for the Venezuelan Flora. VIII. New species and combinations from the venezuelan guayana. Annals of the Missouri Botanical Garden, 77, 549–558. https://doi.org/10.2307/2399519
  • Carnevali, G., & Ramírez-Morillo, I. M. (2003). Cleistes. In P. E. Berry, K. Yatskievych, & B. K. Holst (Eds.), Flora of the venezuelan guayana (Vol. 7, pp. 278–280). Missouri Botanical Garden Press.
  • Cruz-Lustre, G., Batista, J. A. N., Radins, J. A., González, A., & Borba, E. L. (2020). Morphometric analysis of the Habenaria parviflora complex (Orchidaceae). Plant Systematics and Evolution, 306, 37. https://doi.org/10.1007/s00606-020-01634-2
  • Dodson, C. H. (1997). Nuevas orquídeas del Ecuador – 5. Orquideologia, 20, 271–279.
  • Dodson, C. H., & Escobar, R. (1994). Orquídeas nativas del ecuador (Vol. 1). Dodson Trust, Editorial Colina.
  • Doyle, J. J., & Doyle, J. S. (1987). A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochemical Bulletin, 19, 11–15.
  • Dressler, R. L. (2003). Orchidaceae. In B. E. Hammel, M. H. Grayum, C. Herrera, & N. Zamora (Eds.), Manual de Plantas de Costa Rica Monocotiledóneas: Vol. 3. Orchidaceae-Zingiberaceae (pp. 1–595). Missouri Botanical Garden Press.
  • Dunsterville, G. C. K., & Garay, L. A. (1959). Venezuelan Orchids Illustrated (Vol. 1). Andre Deutsche.
  • Erixon, P., Svennblad, B., Britton, T., & Oxelman, B. (2003). Reliability of Bayesian posterior probabilities and bootstrap frequencies in phylogenetics. Systematic Biology, 52, 665–673. https://doi.org/10.1080/10635150390235485
  • ESRI. (2016). ArcGIS desktop: Release 10. Environmental systems research institute, Redlands. [Computer software]. https://www.redlands.edu/study/schools-and-centers/css/resources/arcgis-desktop/
  • Felsenstein, J. (1985). Confidence limits on phylogenies: An approach using the bootstrap. Evolution; International Journal of Organic Evolution, 39, 783–791. https://doi.org/10.1111/j.1558-5646.1985.tb00420.x
  • Foldats, E. (1969). Pogonia. In T. Lasser (Ed.), Flora de Venezuela, Orchidaceae [Flora of Venezuela, Orchidaceae] (Vol. 15, pp. 129–145). Instituto Botánico.
  • Garay, L. A. (1978). Cleistes. In G. Harling, & B. Sparre (Eds.), Flora of Ecuador: Vol. 9, part 225. Orchidaceae (Cypripedioideae, Orchidoideae and Neottioideae) (pp. 40–42). Botanical Institute.
  • Govaerts, R., Bernet, P., Kratochvil, K., Gerlach, G., Carr, G., Alrich, P., Pridgeon, A. M., Pfahl, J., Campacci, M. A., Holland Baptista, D., Tigges, H., Shaw, J., Cribb, P., George, A., Kreuz, K., Wood, J. (2022, June 24). World Checklist of Orchidaceae. Richmond, U.K. The Board of Trustees of the Royal Botanic Gardens, Kew. http://apps.kew.org/wcsp/
  • Gower, J. C. (1971). A general coefficient of similarity and some of its properties. Biometrics, 27, 857–874. https://doi.org/10.2307/2528823
  • Gower, J. C., & Legendre, P. (1986). Metric and Euclidean properties of dissimilarity coefficients. Journal of Classification, 3, 5–48. https://doi.org/10.1007/BF01896809
  • Hall, T. A. (1999). BioEdit: A user-friendly biological sequence alignment editor and analysis program for windows 95/98/NT. Nucleic Acids Symposium Series, 41, 95–98.
  • Hoehne, F. C. (1940). Orchidaceas, Cleistes. In F. C. Hoehne (Ed.), Flora Brasílica (Vol. 12, pp. 210–238). Secretaria de Agricultura do Estado de São Paulo.
  • Höpke, J., Mucina, L., & Albach, D. C. (2019). Phylogenetic and morphometric analysis of Plantago section Coronopus (Plantaginaceae). TAXON, 68, 315–339. https://doi.org/10.1002/tax.12035
  • iNaturalist. (2022, July 2). iNaturalist Research-Grade Observations. Retrieved July 2, 2022, from https://doi.org/10.15468/ab3s5x/
  • Kenny, J. (1992). Native orchids of the eastern Caribbean. Macmillan.
  • Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. Journal of Molecular Evolution, 16, 111–120. https://doi.org/10.1007/BF01731581
  • Kolanowska, M., Escobar, O. A. P., Sánchez, E. P., & Szlachetko, D. L. (2011). An Illustrated Field Guide to the Orchids of the Yotoco Forest Reserve (Colombia). Fundacja Rozwoju Uniwersytetu Gdańskiego.
  • Kress, W. J., Prince, L. M., & Williams, K. J. (2002). The phylogeny and a new classification of the gingers (Zingiberaceae): evidence from molecular data. American Journal of Botany, 89, 1682–1696. https://doi.org/10.3732/ajb.89.10.1682
  • Kumar, S., Stecher, G., Li, M., Knyaz, C., & Tamura, K. (2018). MEGA X: Molecular evolutionary genetics analysis across computing platforms. Molecular Biology and Evolution, 35, 1547–1549. https://doi.org/10.1093/molbev/msy096
  • Legendre, P., & Legendre, L. (1998). Numerical ecology. Elsevier Science BV.
  • Lindley, J. (1840). The genera and species of orchidaceous plants. Ridgways.
  • Luz, F. J. F., & Oliveira, J. M. F. (2012). Orquídeas de Roraima. Embrapa.
  • Maechler, M., Rousseeuw, P., Struyf, A., Hubert, M., Hornik, K. (2021). Cluster: Cluster Analysis Basics and Extensions. R package version 2.1.2. [Computer software]. https://CRAN.R-project.org/package=cluster
  • Mansfeld, R. (1929). Figuren-Atlas zu den Orchideenfloren der südamerkanischen Kordillerenstaaten. Repertorium specierum novarum regni vegetabilis. Beihefte, 57, 1–142.
  • Meneguzzo, T. E. C., & van den Berg, C. (2020). Chimaeras and ghosts: Solving a chimaeric specimen and two neglected orchid names. Willdenowia, 50, 139–146. https://doi.org/10.3372/wi.50.50113
  • Menezes, L. C. (2004). Orchids: Brazilian Central Plateau. Ibama.
  • Nóbrega, S. R., Luz, F. J. F., Oliveira, J. M. F., Araújo, W. F., & Tomé, S. G. (2016). Orchid’s diversity at Tepequém’s Tepuy, Roraima, Brazil. Ornamental Horticulture, 22, 265–271. https://doi.org/10.14295/oh.v22i3.936
  • Oksanen, J., Blanchet, F. G., Friendly, M., Kindt, R., Legendre, P., McGlinn, D., Minchin, P. R., O'Hara, R. B., Simpson, G. L., Solymos, P., Stevens, M. H. H., Szoecs, E., & Wagner, H. (2020). Vegan: Community Ecology Package. R package version 2.5-7. [Computer software]. https://CRAN.R-project.org/package=vegan
  • Ortiz-Valdivieso, P. (2012). Especies Colombianas del género Cleistes (Orchidaceae). El Orquideólogo, 1, 1–10.
  • Ortiz-Valdivieso, P., & Uribe-Vélez, U. (2014). Orquídeas, Tesoro de Colombia. Davinci Publicidad y Medios S.A.S.
  • Pansarin, E. R., Salatino, A., Pansarin, L. M., & Sazima, M. (2012). Pollination systems in Pogonieae (Orchidaceae: Vanilloideae): A hypothesis of evolution among reward and rewardless flowers. Flora (Jena), 207, 849–861. https://doi.org/10.1016/j.flora.2012.09.011
  • Pansarin, E. R., Salatino, A., & Salatino, M. L. F. (2008). Phylogeny of South American Pogonieae (Orchidaceae, Vanilloideae) based on sequences of nuclear ribosomal (ITS) and chloroplast (psaB, rbcL rps16, and trnL-F) DNA with emphasis on Cleistes and discussion of biogeographic implications. Organisms Diversity & Evolution, 8, 171–181. https://doi.org/10.1016/j.ode.2007.09.003
  • Pansarin, E. R. (2005). Sistemática filogenética e biologia floral de Pogoniinae sul-americanas, e revisão taxonômica e análise das ceras epicuticulares do gênero Cleistes Rich. ex Lindl. (Orchidaceae). [Doctoral dissertation]. Universidade Estadual de Campinas.
  • Paradis, E., & Schliep, K. (2019). ape 5.0: An environment for modern phylogenetics and evolutionary analyses in R. Bioinformatics (Oxford, England), 35, 526–528. https://doi.org/10.1093/bioinformatics/bty633
  • Posada, D. (2008). jModelTest: Phylogenetic model averaging. Molecular Biology and Evolution, 25, 1253–1256. https://doi.org/10.1093/molbev/msn083
  • Pupulin, F. (2007). Contributions toward a reassessment of Costa Rican Zygopetalinae (Orchidaceae). 3. A systematic revision of Dichaea in Costa Rica. Harvard Papers in Botany, 12, 15–153. https://doi.org/10.3100/1043-4534(2007)12[15:CTAROC]2.0.CO;2
  • R Core Team. (2021). R: A language and environment for statistical computing. R Foundation for Statistical Computing. [Computer software]. https://www.R-project.org/
  • Ramette, A. (2007). Multivariate analyses in microbial ecology. FEMS Microbiology Ecology, 62, 142–160. https://doi.org/10.1111/j.1574-6941.2007.00375.x
  • Reina-Rodriguez, G. A., Otero-Ospina, J. T., & López-Machado, F. (2011). Guía ilustrada de las orquídeas del Valle geográfico del río Cauca y Piedemonte andino bajo. Asociación Vallecaucana de Orquideología.
  • Romero-González, G. A., & Gómez, C. (2009). Diversidad de Orchidaceae en el municipio autónomo Maroa, Estado Amazonas, Venezuela. Apéndice III, nomenclatura. BioLlania, 9, 271–273.
  • Romero-González, G. A., Henao, H., Gómez, C., & Fernández-Concha, G. C. (2013). Novelties in the orchid flora of Venezuela VI. Vanilloideae, Pogonieae. Notes on Cleistes tenuis, a dual personality species. Harvard Papers in Botany, 18, 225–235. https://doi.org/10.3100/025.018.0215
  • Ronquist, F., & Huelsenbeck, J. P. (2003). MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics (Oxford, England), 19, 1572–1574. https://doi.org/10.1093/bioinformatics/btg180
  • RStudio Team. (2021). RStudio: Integrated Development Environment for R. [Computer software]. https://www.rstudio.com/products/RStudio/
  • Sambin, A., & Aucourd, M. (2021). Mise à jour de l’inventaire des orchidées présentes autour et sur le pic Coudreau des Monts Bakra. Avec Une Note Taxinomique Pour Quelques Espèces. Richardiana, 5, 121–141.
  • Sambin, A., & Ravet, E. (2021). Les Orchidées de Guyane. Edition Biotope.
  • Schweinfurth, C., & Fernandez-Perez, A. (1963). El Genero Pogonia. In C. Schweinfurth & A. Fernandez-Perez (Eds.), Flora de la Real Expedición Botánica del Nuevo Reino de Granada: Vol. 7, Microspermae: Orchidaceae I (pp. 23, plates 5–6). Ediciones Cultura Hispanica.
  • Simpson, M. G. (2006). Plant systematics. Elsevier Academic Press.
  • Stace, C. A. (1989). Plant taxonomy and biosystematics (2nd ed.). Edward Arnold, Hodder and Stoughton Limited.
  • Stearn, W. T. (1992). Botanical Latin. (4nd ed.) Timber Press.
  • Swofford, D. L. (2001). PAUP: Phylogenetic analysis using parsimony (and Other Methods) (version 4.b.8) [Computer software]. Sunderland: Sinauer Associates. https://paup.phylosolutions.com/
  • Sylvester, S. P., Soreng, R. J., & Gilliespie, L. J. (2021). Resolving páramo Poa (Poaceae): morphometric and phylogenetic analysis of the ‘Cucullata complex’ of north-west South America. Botanical Journal of the Linnean Society, 197, 104–146. https://doi.org/10.1093/botlinnean/boab027
  • Szlachetko, D. L., & Baranow, P. (2012). New species of the genus Cleistes (Orchidaceae, Vanilloideae) from Guyana. Die Orchidee (Hamburg), 63, 488–490.
  • Szlachetko, D. L., & Kolanowska, M. (2013). A New Species of Cleistes (Orchidaceae-Vanilloideae) from Colombia. Phyton (Horn, Austria), 53, 1–6.
  • Szlachetko, D. L., & Kolanowska, M. (2014). A new species of Cleistes (Vanilloideae, Orchidaceae) from Colombia. Polish Botanical Journal, 59, 15–18. https://doi.org/10.2478/pbj-2014-0012
  • Szlachetko, D. L., Kolanowska, M., & Baranow, P. (2020). Cleistes. In D. L. Szlachetko, & M. Marta Kolanowska (Eds.), Materials to the Orchid flora of Colombia. Orchidaceae. Spiranthoideae - Cranichideae, Vanilloideae (Vol. 3, pp. 159–184). Koeltz Botanical Books.
  • Szlachetko, D. L., Nowak, S., Baranow, P., & Kolanowska, M. (2016). Orchids of the Guianas (Guyana, Suriname, French Guiana), vol.1. Cypripediaceae, Orchidaceae. Koeltz Botanical books.
  • Thiers, B. M. (2022, July 13). Index Herbariorum: A global directory of public herbaria and associated staff. The New York Botanical Garden’s Virtual Herbarium. http://sweetgum.nybg.org/science/ih/
  • Toscano de Brito, A. L. V., & Cribb, P. (2005). Orquideas da Chapada Diamantina. Nova Fronteira.
  • Turland, N. J., Wiersema, J. H., Barrie, F. R., Greuter, W., Hawksworth, D. L., Herendeen, P. S., Knapp, S., Kusber, W. H., Li, D.-Z., Marhold, K., May, T. W., McNeill, J., Monro, A. M., Prado, J., Price, M. J., & Smith, G. F. (2018). International code of nomenclature for algae, fungi, and plants (Shenzhen Code) adopted by the Nineteenth International Botanical Congress Shenzhen, China, July 2017. Regnum Vegetabile 159. Koeltz Botanical Books. https://doi.org/10.12705/Code.2018
  • Vieira, T. L., & Barros, F. (2017). Orchidaceae na Serra do Ouro Branco, Minas Gerais, Brasil. Rodriguésia, 68, 691–747. https://doi.org/10.1590/2175-7860201768224
  • Williams, L. O. (1946). Pogonia. In L. O. Williams & P. H. Allen (Eds.), Orchids of Panama [Facsimile reprint of Flora of Panama]: Vol. 3, fascicle 2. Orchidaceae (pp 17–20). Missouri Botanical Garden Press.
  • Williams, L. O. (1956). An enumeration of the Orchidaceae of Central America, British Honduras and Panama. Ceiba, 5, 1–256.

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