More geckos, fewer gaps: diversity and distribution of Hemidactylus geckos (Squamata: Gekkonidae) in Jordan

References

• Aloufi, A. A., Amr, Z. S., & Abu Baker, M. A. (2022). Reptiles from ‘Uruq Bani Ma’arid and Harat al Harrah protected areas in Saudi Arabia. Herpetology Notes, 15, 483–491.
   Google Scholar
• Al-Sadoon, M. K., Paray, B. A., & Al-Otaibi, H. S. (2016). Survey of the reptilian fauna of the Kingdom of Saudi Arabia. V. The lizard fauna of Turaif region. Saudi Journal of Biological Sciences, 23, 642–648. https://doi.org/10.1016/j.sjbs.2016.04.005
   PubMed Web of Science ®Google Scholar
• Amr, Z. S., Al-Oran, R., & Disi, A. M. (1994). Reptiles of southern Jordan. Snake, 26, 41–49.
   Google Scholar
• Amr, Z. S., & Disi, A. M. (2011). Systematics, distribution and ecology of the snakes of Jordan. Vertebrate Zoology, 61, 179–266. https://doi.org/10.3897/vz.61.e31150
   Web of Science ®Google Scholar
• Amr, Z. S., Modrý, D., Abu Baker, M., Qarqas, M., Al Zaidanyen, J., & Moravec, J. (2007). First record of Hemidactylus mindiae Baha El Din 2005 from Jordan. Herpetozoa, 20, 73–75.
   Google Scholar
• Amr, Z. S., Modrý, D., & Al Shudiefat, M. F. (2011). Badia: The living desert. Al Rai Printing Press.
   Google Scholar
• Baha El Din, S. (2006). A guide to reptiles and amphibians of Egypt. The American University in Cairo Press.
   Google Scholar
• Bar, A., Haimovitch, G., & Meiri, S. (2021). Field guide to the amphibians and reptiles of Israel. Edition Chimaira.
   Google Scholar
• Barbour, T. (1914). Notes on some reptiles from Sinai and Syria. Proceedings of the New England Zoölogical Club, 5, 73–92.
   Google Scholar
• Carranza, S., & Arnold, E. N. (2006). Systematics, biogeography, and evolution of Hemidactylus geckos (Reptilia: Gekkonidae) elucidated using mitochondrial DNA sequences. Molecular Phylogenetics and Evolution, 38, 531–545. https://doi.org/10.1016/j.ympev.2005.07.012
   PubMed Web of Science ®Google Scholar
• Carranza, S., & Arnold, E. N. (2012). A review of the geckos of the genus Hemidactylus (Squamata: Gekkonidae) from Oman based on morphology, mitochondrial and nuclear data, with descriptions of eight new species. Zootaxa, 3378, 1–95. https://doi.org/10.11646/zootaxa.3378.1.1
   Google Scholar
• de Pous, P., Machado, L., Metallinou, M., Červenka, J., Kratochvíl, L., Paschou, N., Mazuch, T., Šmíd, J., Simó-Riudalbas, M., Sanuy, D., & Carranza, S. (2016). Taxonomy and biogeography of Bunopus spatalurus (Reptilia; Gekkonidae) from the Arabian Peninsula. Journal of Zoological Systematics and Evolutionary Research, 54, 67–81. https://doi.org/10.1111/jzs.12107
   Web of Science ®Google Scholar
• Disi, A. M. (1996). A contribution to the knowledge of the herpetofauna of Jordan. VI. The Jordanian herpetofauna as a Zoogeographic indicator. Herpetozoa, 9, 71–81.
   Google Scholar
• Disi, A. M., Amr, Z. S., & Hamidan, N. (2014). Diversity, threats, and conservation, of the terrestrial and freshwater herpetofauna of Jordan. Russian Journal of Herpetology, 21, 221–233.
   Web of Science ®Google Scholar
• Disi, A. M., Modrý, D., Bunian, F., Al-Oran, R. M., & Amr, Z. S. (1999). Amphibians and reptiles of the Badia region of Jordan. Herpetozoa, 12, 135–146.
   Google Scholar
• Disi, A. M., Modrý, D., Nečas, P., & Rifai, L. (2001). Amphibians and reptiles of the Hashemite Kingdom of Jordan. An atlas and field guide. Edition Chimaira.
   Google Scholar
• Ficetola, G. F., Falaschi, M., Bonardi, A., Padoa-Schioppa, E., & Sindaco, R. (2018). Biogeographical structure and endemism pattern in reptiles of the Western Palearctic. Progress in Physical Geography: Earth and Environment, 42, 220–236. https://doi.org/10.1177/0309133318765084
   Google Scholar
• Guindon, S., Dufayard, J.-F., Lefort, V., Anisimova, M., Hordijk, W., & Gascuel, O. (2010). New algorithms and methods to estimate maximum-likelihood phylogenies: Assessing the performance of PhyML 3.0. Systematic Biology, 59, 307–321. https://doi.org/10.1093/sysbio/syq010
   PubMed Web of Science ®Google Scholar
• Handal, E. N., Amr, Z. S., & Qumsiyeh, M. B. (2016). Some records of reptiles from the Palestinian territories. Russian Journal of Herpetology, 23, 261–270. https://doi.org/10.30906/1026-2296-2016-23-4-261-270
   Web of Science ®Google Scholar
• Jandzik, D., Jablonski, D., Zinenko, O., Kukushkin, O. V., Moravec, J., & Gvoždík, V. (2018). Pleistocene extinctions and recent expansions in an anguid lizard of the genus Pseudopus. Zoologica Scripta, 47, 21–32. https://doi.org/10.1111/zsc.12256
   Web of Science ®Google Scholar
• Kalyaanamoorthy, S., Minh, B. Q., Wong, T. K. F., von Haeseler, A., & Jermiin, L. S. (2017). ModelFinder: Fast model selection for accurate phylogenetic estimates. Nature Methods, 14, 587–589. https://doi.org/10.1038/nmeth.4285
   PubMed Web of Science ®Google Scholar
• Katoh, K., Rozewicki, J., & Yamada, K. D. (2019). MAFFT online service: Multiple sequence alignment, interactive sequence choice and visualization. Briefings in Bioinformatics, 20, 1160–1166. https://doi.org/10.1093/bib/bbx108
   PubMed Web of Science ®Google Scholar
• Kearse, M., Moir, R., Wilson, A., Stones-Havas, S., Cheung, M., Sturrock, S., Buxton, S., Cooper, A., Markowitz, S., Duran, C., Thierer, T., Ashton, B., Meintjes, P., & Drummond, A. (2012). Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics (Oxford, England), 28, 1647–1649. https://doi.org/10.1093/bioinformatics/bts199
   PubMed Web of Science ®Google Scholar
• Kumar, S., Stecher, G., Li, M., Knyaz, C., & Tamura, K. (2018). MEGA X: Molecular evolutionary genetics analysis across computing platforms. Molecular Biology and Evolution, 35, 1547–1549. https://doi.org/10.1093/molbev/msy096
   PubMed Web of Science ®Google Scholar
• Metallinou, M., Červenka, J., Crochet, P.-A., Kratochvíl, L., Wilms, T., Geniez, P., Shobrak, M. Y., Brito, J. C., & Carranza, S. (2015). Species on the rocks: Systematics and biogeography of the rock-dwelling Ptyodactylus geckos (Squamata: Phyllodactylidae) in North Africa and Arabia. Molecular Phylogenetics and Evolution, 85, 208–220. https://doi.org/10.1016/j.ympev.2015.02.010
   PubMed Web of Science ®Google Scholar
• Minh, B. Q., Nguyen, M. A. T., & von Haeseler, A. (2013). Ultrafast approximation for phylogenetic bootstrap. Molecular Biology and Evolution, 30, 1188–1195. https://doi.org/10.1093/molbev/mst024
   PubMed Web of Science ®Google Scholar
• Moravec, J., & Böhme, W. (1997). A new subspecies of the Mediterranean Gecko, Hemidactylus turcicus from the Syrian lava desert (Squamata: Sauria: Gekkonidae). Herpetozoa, 10, 121–128.
   Google Scholar
• Moravec, J., Kratochvíl, L., Amr, Z. S., Jandzik, D., Šmíd, J., & Gvoždík, V. (2011). High genetic differentiation within the Hemidactylus turcicus complex (Reptilia: Gekkonidae) in the Levant, with comments on the phylogeny and systematics of the genus. Zootaxa, 2894, 21–38. https://doi.org/10.11646/zootaxa.2894.1.2
   Google Scholar
• Nazarov, R., Melnikov, D., & Melnikova, E. (2013). Three new species of Ptyodactylus (Reptilia; Squamata; Phyllodactylidae) from the Middle East. Russian Journal of Herpetology, 20, 147–162. https://doi.org/10.13140/2.1.3072.5767
   Web of Science ®Google Scholar
• Nguyen, L.-T., Schmidt, H. A., von Haeseler, A., & Minh, B. Q. (2015). IQ-TREE: A fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies. Molecular Biology and Evolution, 32, 268–274. https://doi.org/10.1093/molbev/msu300
   PubMed Web of Science ®Google Scholar
• Ronquist, F., Teslenko, M., van der Mark, P., Ayres, D. L., Darling, A., Höhna, S., Larget, B., Liu, L., Suchard, M. A., & Huelsenbeck, J. P. (2012). MrBayes 3.2: Efficient Bayesian phylogenetic inference and model choice across a large model space. Systematic Biology, 61, 539–542. https://doi.org/10.1093/sysbio/sys029
   PubMed Web of Science ®Google Scholar
• Sindaco, R., & Jeremčenko, V. K. (2008). The reptiles of the western Palearctic, volume 1: Annotated checklist and distributional atlas of the turtles, crocodiles, amphisbaenians and lizards of Europe, North Africa, Middle East and Central Asia. Edizioni Belvedere.
   Google Scholar
• Sindaco, R., Simó-Riudalbas, M., Sacchi, R., & Carranza, S. (2018). Systematics of the Mesalina guttulata species complex (Squamata: Lacertidae) from Arabia with the description of two new species. Zootaxa, 4429, 513–547. https://doi.org/10.11646/zootaxa.4429.3.4
   PubMed Web of Science ®Google Scholar
• Šmíd, J., Carranza, S., Kratochvíl, L., Gvoždík, V., Nasher, A. K., & Moravec, J. (2013). Out of Arabia: A complex biogeographic history of multiple vicariance and dispersal events in the Gecko Genus Hemidactylus (Reptilia: Gekkonidae). PloS One, 8, e64018. https://doi.org/10.1371/journal.pone.0064018
   PubMed Web of Science ®Google Scholar
• Šmíd, J., Mazuch, T., Nováková, L., Modrý, D., Malonza, P. K., Elmi, H. S. A., Carranza, S., & Moravec, J. (2020). Phylogeny and systematic revision of the Gecko Genus Hemidactylus from the horn of Africa (Squamata: Gekkonidae). Herpetological Monographs, 33, 26–47. https://doi.org/10.1655/HERPMONOGRAPHS-D-19-00010.1
   Web of Science ®Google Scholar
• Šmíd, J., Moravec, J., Kratochvíl, L., Gvoždík, V., Nasher, A. K., Busais, S. M., Wilms, T., Shobrak, M. Y., & Carranza, S. (2013). Two newly recognized species of Hemidactylus (Squamata, Gekkonidae) from the Arabian Peninsula and Sinai, Egypt. ZooKeys, 355, 79–107. https://doi.org/10.3897/zookeys.355.6190
   Web of Science ®Google Scholar
• Šmíd, J., Sindaco, R., Shobrak, M., Busais, S., Tamar, K., Aghová, T., Simó-Riudalbas, M., Tarroso, P., Geniez, P., Crochet, P.-A., Els, J., Burriel-Carranza, B., Tejero-Cicuéndez, H., & Carranza, S. (2021). Diversity patterns and evolutionary history of Arabian squamates. Journal of Biogeography, 48, 1183–1199. https://doi.org/10.1111/jbi.14070
   Web of Science ®Google Scholar
• Šmíd, J., Uvizl, M., Shobrak, M., Busais, S., Salim, A. F. A., AlGethami, R. H. M., AlGethami, A. R., Alanazi, A. S. K., Alsubaie, S. D., Rovatsos, M., Nováková, L., Mazuch, T., & Carranza, S. (2023). Diversification of Hemidactylus geckos (Squamata: Gekkonidae) in coastal plains and islands of southwestern Arabia with descriptions and complete mitochondrial genomes of two endemic species to Saudi Arabia. Organisms Diversity & Evolution, 23, 185–207. https://doi.org/10.1007/s13127-022-00572-w
   Web of Science ®Google Scholar
• Tamar, K., Carranza, S., In den Bosch, H., Sindaco, R., Moravec, J., & Meiri, S. (2015). Hidden relationships and genetic diversity: Molecular phylogeny and phylogeography of the Levantine lizards of the genus Phoenicolacerta (Squamata: Lacertidae). Molecular Phylogenetics and Evolution, 91, 86–97. https://doi.org/10.1016/j.ympev.2015.05.002
   PubMed Web of Science ®Google Scholar
• Trifinopoulos, J., Nguyen, L.-T., von Haeseler, A., & Minh, B. Q. (2016). W-IQ-TREE: A fast online phylogenetic tool for maximum likelihood analysis. Nucleic Acids Research, 44, W232–W235. https://doi.org/10.1093/nar/gkw256
   PubMed Web of Science ®Google Scholar
• Uetz, P., Freed, P, Aguilar, R., Reyes, F., & Hošek, J. (Eds.) (2023). The reptile database. Retrieved March 28, 2023, from http://www.reptile-database.org
   Google Scholar
• Werner, Y. L. (2016). Reptile life in the land of Israel. Edition Chimaira.
   Google Scholar