A new freshwater gobioid from the Lower Miocene of Turkey in a significantly amended total evidence phylogenetic framework

References

• Agassiz, L. (1839–1844). Recherches sur les poissons fossiles (Vol. 4). Petitpierre.
   Google Scholar
• Agiadi, K., Giamali, C., Girone, A., Moissette, P., Koskeridou, E., & Karakitsios, V. (2020). The Zanclean marine fish fauna and palaeoenvironmental reconstruction of a coastal marine setting in the eastern Mediterranean. Palaeobiodiversity and Palaeoenvironments, 100(3), 773–792. https://doi.org/10.1007/s12549-019-00404-4
   Web of Science ®Google Scholar
• Agiadi, K., Girone, A., Koskeridou, E., Moissette, P., Cornée, J.-J., & Quillévéré, F. (2018). Pleistocene marine fish invasions and paleoenvironmental reconstructions in the eastern Mediterranean. Quaternary Science Reviews, 196, 80–99. https://doi.org/10.1016/j.quascirev.2018.07.037
   Web of Science ®Google Scholar
• Agiadi, K., Vasileiou, G., Koskeridou, E., Moissette, P., & Cornée, J.-J. (2019). Coastal fish otoliths from the early Pleistocene of Rhodes (eastern Mediterranean). Geobios Memoire Special, 55, 1–15. https://doi.org/10.1016/j.geobios.2019.06.006
   Google Scholar
• Agorreta, A., San Mauro, D., Schliewen, U., Van Tassell, J. L., Kovačić, M., Zardoya, R., & Rüber, L. (2013). Molecular phylogenetics of Gobioidei and phylogenetic placement of European gobies. Molecular Phylogenetics and Evolution, 69(3), 619–633. https://doi.org/10.1016/j.ympev.2013.07.017
   PubMed Web of Science ®Google Scholar
• Akihito, Iwata, A., Kobayashi, T., Ikeo, K., Imanishi, T., Ono, H., Umehara, Y., Hamamatsu, C., Sugiyama, K., Ikeda, Y., Sakamoto, K., Fumihito, A., Ohno, S. & Gojobori, T. (2000). Evolutionary aspects of gobioid fishes based upon a phylogenetic analysis of mitochondrial cytochrome b genes. Gene, 259(1–2), 5–15. https://doi.org/10.1016/s0378-1119(00)00488-1
   PubMed Web of Science ®Google Scholar
• Altekar, G., Dwarkadas, S., Huelsenbeck, J. P., & Ronquist, F. (2004). Parallel metropolis coupled Markov chain Monte Carlo for Bayesian phylogenetic inference. Bioinformatics, 20(3), 407–415. https://doi.org/10.1093/bioinformatics/btg427
   PubMed Web of Science ®Google Scholar
• Arcila, D., Pyron, R. A., Tyler, J. C., Ortí, G., & Betancur-R, R. (2015). An evaluation of fossil tip-dating versus node-age calibrations in tetraodontiform fishes (Teleostei: Percomorphaceae). Molecular Phylogenetics and Evolution, 82(Part A), 131–145. https://doi.org/10.1016/j.ympev.2014.10.011
   PubMedGoogle Scholar
• Bajpai, S., & Kapur, V. V. (2004). Oldest known gobiids from Vastan Lignite Mine (early Eocene), Surat district, Gujarat. Current Science, 87(4), 433–435.
   Web of Science ®Google Scholar
• Bannikov, A. F., & Carnevale, G. (2016). †Carlomonnius quasigobius gen. et sp. nov.: The first gobioid fish from the Eocene of Monte Bolca, Italy. Bulletin of Geosciences, 91, 13–22. https://doi.org/10.3140/bull.geosci.1577
   Web of Science ®Google Scholar
• Bauer, E., Cerwenka, A. F., Schliewen, U., & Reichenbacher, B. (in review). New osteological characteristics identify the first stem sleeper goby (Gobioidei, Odontobutidae) from the Upper Eocene. Papers in Palaeontology.
   Google Scholar
• Beck, R. M. D., de Vries, D., Janiak, M. C., Goodhead, I. B., & Boubli, J. P. (2023). Total evidence phylogeny of platyrrhine primates and a comparison of undated and tip-dating approaches. Journal of Human Evolution, 174, 103293. https://doi.org/10.1016/j.jhevol.2022.103293
   PubMed Web of Science ®Google Scholar
• Bekkouche, N., & Gąsiorowski, L. (2022). Careful amendment of morphological data sets improves phylogenetic frameworks: Re-evaluating placement of the fossil Amiskwia sagittiformis. Journal of Systematic Palaeontology, 20(1), 1–14. https://doi.org/10.1080/14772019.2022.2109217
   Web of Science ®Google Scholar
• Bellon, H., Bůžek, Č., Gaudant, J., Kvaček, Z., & Walter, H. (1998). The Česke Středohoří magmatic complex in Northern Bohemia 40K-40Ar ages for volcanism and biostratigraphy of the Cenozoic freshwater formations. Newsletters on Stratigraphy, 36(2–3), 77–103. https://doi.org/10.1127/nos/36/1998/77
   Web of Science ®Google Scholar
• Benson, D. A., Cavanaugh, M., Clark, K., Karsch-Mizrachi, I., Lipman, D. J., Ostell, J., & Sayers, E. W. (2013). GenBank. Nucleic Acids Research, 41(Database issue), D36–42. https://doi.org/10.1093/nar/gks1195
   PubMed Web of Science ®Google Scholar
• Berger, J.-P., Reichenbacher, B., Becker, D., Grimm, M., Grimm, K., Picot, L., Storni, A., Pirkenseer, C., & Schaefer, A. (2005). Eocene–Pliocene time scale and stratigraphy of the Upper Rhine Graben (URG) and the Swiss Molasse Basin (SMB). International Journal of Earth Sciences, 94(4), 711–731. https://doi.org/10.1007/s00531-005-0479-y
   Web of Science ®Google Scholar
• Betancur-R, R., Wiley, E. O., Arratia, G., Acero, A., Bailly, N., Miya, M., Lecointre, G., & Ortí, G. (2017). Phylogenetic classification of bony fishes. BMC Evolutionary Biology, 17(1), 162. https://doi.org/10.1186/s12862-017-0958-3
   PubMedGoogle Scholar
• Birdsong, R. S. (1975). The osteology of Microgobius signatus Poey (Pisces: Gobiidae), with comments on other gobiid fishes. Bulletin of the Florida State Museum. Biological Sciences, 19(3), 134–186.
   Google Scholar
• Birdsong, R. S., Murdy, E. O., & Pezold, F. L. (1988). A study of the vertebral column and median fin osteology in gobioid fishes with comments on gobioid relationships. Bulletin of Marine Science, 42(2), 174–214.
   Web of Science ®Google Scholar
• Bleeker, P. (1849). Bijdrage tot de kennis der Blennioïden en Gobioïden van den Soenda-Molukschen Archipel, met beschrijving van 42 nieuwe soorten. Verhandelingen van Het Bataviaasch Genootschap van Kunsten En Wetenschappen, 22, 1–40.
   Google Scholar
• Bleeker, P. (1856). Beschrijvingen van nieuwe of weinig bekende vischsoorten van Manado en Makassar, grootendeels verzameld op eene reis naar den Molukschen Archipel in het gevolg van den Gouverneur Generaal Duymaer van Twist. Acta Regiae Societatis Scientiarum et Litterarum Gothoburgensis. Zoologica, 1(6), 1–80.
   Google Scholar
• Bradić-Milinović, K., Ahnelt, H., Rundić, L., & Schwarzhans, W. (2019). The lost freshwater goby fish fauna (Teleostei, Gobiidae) from the early Miocene of Klinci (Serbia). Swiss Journal of Palaeontology, 138(2), 285–315. https://doi.org/10.1007/s13358-019-00194-4
   Web of Science ®Google Scholar
• Brandl, S. J., Goatley, C. H. R., Bellwood, D. R., & Tornabene, L. (2018). The hidden half: Ecology and evolution of cryptobenthic fishes on coral reefs. Biological Reviews of the Cambridge Philosophical Society, 93(4), 1846–1873. https://doi.org/10.1111/brv.12423
   PubMed Web of Science ®Google Scholar
• Churchill, G. A., von Haeseler, A., & Navidi, W. C. (1992). Sample size for a phylogenetic inference. Molecular Biology and Evolution, 9(4), 753–769.
   PubMed Web of Science ®Google Scholar
• Cohen, K. M., Harper, D. A. T., & Gibbard, P. L. (2022). ICS International Chronostratigraphic Chart 2022/10. International Commission on Stratigraphy, IUGS. Retrieved January 31, 2023, from https://www.stratigraphy.org
   Google Scholar
• Cuvier, G. (1816). Le règne animal distribué d’après son organisation: pour servir de base a l’histoire naturelle des animaux et d’introduction a l’anatomie comparée. Les reptiles, les poissons, les mollusques et les annélides (Vol. 2). A. Belin.
   Google Scholar
• Edgar, R. C. (2004). MUSCLE: Multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research, 32(5), 1792–1797. https://doi.org/10.1093/nar/gkh340
   PubMed Web of Science ®Google Scholar
• Fabricius, J. C. (1779). Reise nach Norwegen mit Bemerkungen aus der Naturhistorie und Oekonomie. Carl Ernest Bohn.
   Google Scholar
• Felsenstein, J. (1985). Confidence limits on phylogenies: An approach using the bootstrap. Evolution: International Journal of Organic Evolution, 39(4), 783–791. https://doi.org/10.2307/2408678
   PubMed Web of Science ®Google Scholar
• Fricke, R. (1983). A method of counting caudal fin rays of actinopterygian fishes. Braunschweiger Naturkundliche Schriften, 1(4), 729–733.
   Google Scholar
• Fricke, R., Eschmeyer, W. N., & Fong, J. D. (2023). Eschmeyer’s catalog of fishes: Genera/species by family/subfamily. Retrieved January 17, 2023, from https://research.calacademy.org/research/Ichthyology/catalog/SpeciesByFamily.asp
   Google Scholar
• Froese, R., & Pauly, D. (2023). FishBase. Retrieved December 2023, from https://fishbase.org.au/v4
   Google Scholar
• Gaudant, J. (1979). Sur la présence de Gobiidae (Poissons téléostéens) dans l’Oligocène inférieur de Rouffach (Haut-Rhin). Sciences Géologiques, Bulletin, 32(3), 131–137. https://doi.org/10.3406/sgeol.1979.1560
   Google Scholar
• Gaudant, J. (1993). L'ichthyofaune lacustre du Miocène d'Etili (Anatolie occidentale, Turquie): un réexamen. Neues Jahrbuch für Geologie und Paläontologie – Monatshefte, 1993(6), 335–344. https://doi.org/10.1127/njgpm/1993/1993/335
   Google Scholar
• Gaudant, J., & Quayle, W. J. (1988). New palaeontological studies on the Chapelcorner fish bed (Upper Eocene, Isle of Wight). Bulletin of the British Museum (Natural History) Geology, 44(1), 15–39.
   Google Scholar
• Gelman, A., & Rubin, D. B. (1992). Inference from iterative simulation using multiple sequences. Statistical Science: A Review Journal of the Institute of Mathematical Statistics, 7(4), 457–472. https://doi.org/10.1214/ss/1177011136
   Google Scholar
• Geyer, C. J. (1991). Markov chain Monte Carlo maximum likelihood. In E. M. Keramidas (Ed.), Computing science and statistics: Proceedings of the 23rd symposium on the Interface (pp. 156–163). Interface Foundation.
   Google Scholar
• Gierl, C., Dohrmann, M., Keith, P., Humphreys, W., Esmaeili, H. R., Vukić, J., Šanda, R., & Reichenbacher, B. (2022). An integrative phylogenetic approach for inferring relationships of fossil gobioids (Teleostei: Gobiiformes). PloS One, 17(7), e0271121. https://doi.org/10.1371/journal.pone.0271121
   PubMed Web of Science ®Google Scholar
• Gierl, C., Liebl, D., Sanda, R., Vukic, J., Esmaeili, H. R., & Reichenbacher, B. (2018). What can goby otolith morphology tell us? Cybium, 42(4), 349–363.
   Web of Science ®Google Scholar
• Gierl, C., & Reichenbacher, B. (2015). A new fossil genus of Gobiiformes from the Miocene characterized by a mosaic set of characters. Copeia, 103(4), 792–805. https://doi.org/10.1643/CI-14-146
   Web of Science ®Google Scholar
• Gierl, C., & Reichenbacher, B. (2017). Revision of so-called Pomatoschistus (Gobiiformes, Teleostei) from the late Eocene and early Oligocene. Palaeontologia Electronica, 20.2.33A, 1–17. https://doi.org/10.26879/721
   Web of Science ®Google Scholar
• Gierl, C., Reichenbacher, B., Gaudant, J., Erpenbeck, D., & Pharisat, A. (2013). An extraordinary gobioid fish fossil from Southern France. PloS One, 8(5), e64117. https://doi.org/10.1371/journal.pone.0064117
   PubMed Web of Science ®Google Scholar
• Gill, A. C., & Mooi, R. D. (2012). Thalasseleotrididae, new family of marine gobioid fishes from New Zealand and temperate Australia, with a revised definition of its sister taxon, the Gobiidae (Teleostei: Acanthomorpha). Zootaxa, 3266(1), 41–52. https://doi.org/10.11646/zootaxa.3266.1.3
   Google Scholar
• Gill, T. N. (1863). Descriptions of the gobioid genera of the western coast of temperate North America. Proceedings of the Academy of Natural Sciences of Philadelphia, 15, 262–267.
   Google Scholar
• Goatley, C. H. R., & Tornabene, L. (2022). Tempestichthys bettyae, a new genus and species of ocean sleeper (Gobiiformes, Thalasseleotrididae) from the central Coral Sea. Systematics and Biodiversity, 20(1), 1–15. https://doi.org/10.1080/14772000.2022.2090633
   PubMed Web of Science ®Google Scholar
• Göktaş, F., & Ünay, E. (2000). The stratigraphy of the NW parts of the Akhisar (Manisa) Neogene basin. International Earth Sciences Colloquium on the Aegean Region (IESCA-2000), İzmir.
   Google Scholar
• Goloboff, P. A. (1993). Estimating character weights during tree search. Cladistics: The International Journal of the Willi Hennig Society, 9(1), 83–91. https://doi.org/10.1111/j.1096-0031.1993.tb00209.x
   PubMed Web of Science ®Google Scholar
• Goloboff, P. A., & Catalano, S. A. (2016). TNT version 1.5, including a full implementation of phylogenetic morphometrics. Cladistics: The International Journal of the Willi Hennig Society, 32(3), 221–238. https://doi.org/10.1111/cla.12160
   PubMed Web of Science ®Google Scholar
• Goloboff, P. A., Torres, A., & Arias, J. S. (2018). Weighted parsimony outperforms other methods of phylogenetic inference under models appropriate for morphology. Cladistics: The International Journal of the Willi Hennig Society, 34(4), 407–437. https://doi.org/10.1111/cla.12205
   PubMed Web of Science ®Google Scholar
• Gosline, W. A. (1955). The osteology and relationships of certain gobioid fishes, with particular reference to the genera Kraemeria and Microdesmus. Pacific Science, 9, 158–170.
   Google Scholar
• Gouy, M., Guindon, S., & Gascuel, O. (2010). SeaView version 4: A multiplatform graphical user interface for sequence alignment and phylogenetic tree building. Molecular Biology and Evolution, 27(2), 221–224. https://doi.org/10.1093/molbev/msp259
   PubMed Web of Science ®Google Scholar
• Guindon, S., Dufayard, J.-F., Lefort, V., Anisimova, M., Hordijk, W., & Gascuel, O. (2010). New algorithms and methods to estimate maximum-likelihood phylogenies: Assessing the performance of PhyML 3.0. Systematic Biology, 59(3), 307–321. https://doi.org/10.1093/sysbio/syq010
   PubMed Web of Science ®Google Scholar
• Günther, A. (1880). An introduction to the study of fishes. A. and C. Black.
   Google Scholar
• Gut, C., Vukić, J., Šanda, R., Moritz, T., & Reichenbacher, B. (2020). Identification of past and present gobies: Distinguishing Gobius and Pomatoschistus (Teleostei: Gobioidei) species using characters of otoliths, meristics and body morphometry. Contributions to Zoology, 89(3), 282–323. https://doi.org/10.1163/18759866-bja10002
   Web of Science ®Google Scholar
• Harrison, I. J. (1989). Specialization of the gobioid palatopterygoquadrate complex and its relevance to gobioid systematics. Journal of Natural History, 23(2), 325–353. https://doi.org/10.1080/00222938900770211
   Web of Science ®Google Scholar
• Harrison, I. J. (1993). The West African sicydiine fishes, with notes on the genus Lentipes (Teleostei: Gobiidae). Ichthyological Exploration of Freshwaters, 4(3), 201–232.
   Google Scholar
• Hasegawa, M., Kishino, H., & Yano, T. (1985). Dating of the human-ape splitting by a molecular clock of mitochondrial DNA. Journal of Molecular Evolution, 22(2), 160–174. https://doi.org/10.1007/BF02101694
   PubMed Web of Science ®Google Scholar
• Hilgen, F. J., Lourens, L. J., Van Dam, J. A., Beu, A. G., Boyes, A. F., Cooper, R. A., Krijgsman, W., Ogg, J. G., Piller, W. E., & Wilson, D. S. (2012). Chapter 29 – The Neogene Period. In F. M. Gradstein, J. G. Ogg, M. D. Schmitz, & G. M. Ogg (Eds.), The Geologic Time Scale (pp. 923–978). Elsevier, Amsterdam.
   Google Scholar
• Hoese, D. F. (1984). Gobioidei: Relationships. In H. G. Moser, W. J. Richards, D. M. Cohen, M. P. Fahay, A. W. Kendall Jr, & S. L. Richardson (Eds.), Ontogeny and systematics of fishes (pp. 588–591). The American Society of Ichthyologists and Herpetologists.
   Google Scholar
• Hoese, D. F., & Gill, A. C. (1993). Phylogenetic relationships of eleotridid fishes (Perciformes: Gobioidei). Bulletin of Marine Science, 52(1), 415–440.
   Web of Science ®Google Scholar
• Hoese, D. F., & Larson, H. K. (1987). New Australian fishes. Part 11. A new genus and species of eleotridid (Gobioidea) from southern Australia with a discussion of relationships. Memoirs of Museum Victoria, 48(1), 43–50. https://doi.org/10.24199/j.mmv.1987.48.11
   Google Scholar
• Hoese, D. F., & Roberts, C. D. (2005). A new species of the eleotrid genus Thalasseleotris (Teleostei: Gobioidei) from New Zealand coastal waters. Journal of the Royal Society of New Zealand, 35(4), 417–431. https://doi.org/10.1080/03014223.2005.9517793
   Web of Science ®Google Scholar
• Höhna, S., Stadler, T., Ronquist, F., & Britton, T. (2011). Inferring speciation and extinction rates under different sampling schemes. Molecular Biology and Evolution, 28(9), 2577–2589. https://doi.org/10.1093/molbev/msr095
   PubMed Web of Science ®Google Scholar
• Iljin, B. S. (1930). Le système des Gobiidés. Trabajos Del Instituto Espanol de Oceanografía, 2, 1–63.
   Google Scholar
• Jeon H.-B., Jun J., Choi S.-H., & Suk H. Y. (2021). Diversification and colonization processes in Gobioidei predicted based on mitochondrial 12S rRNA with focusing on Oxudercidae. Mitochondrial DNA. Part B, Resources, 6(3), 1166–1172. https://doi.org/10.1080/23802359.2021.1901620
   PubMed Web of Science ®Google Scholar
• Johnson, G. D., & Patterson, C. (1993). Percomorph phylogeny: A survey of acanthomorphs and a new proposal. Bulletin of Marine Science, 52(1), 554–626.
   Web of Science ®Google Scholar
• Kaya, O. (1981). Miocene reference section for the coastal parts of West Anatolia. Newsletter on Stratigraphy, 10(3), 164–191. https://doi.org/10.1127/nos/10/1981/164
   Google Scholar
• Kaya, O., Ünay, E., Göktaş, F., & Saraç, G. (2007). Early Miocene stratigraphy of central west Anatolia, Turkey: Implications for the tectonic evolution of the eastern Aegean area. Geological Journal, 42(1), 85–109. https://doi.org/10.1002/gj.1071
   Web of Science ®Google Scholar
• Koken, E. (1891). Neue Untersuchungen an tertiären Fisch-Otolithen II. Zeitschrift Der Deutschen Geologischen Gesellschaft, 43, 77–170.
   Google Scholar
• Lakner, C., van der Mark, P., Huelsenbeck, J. P., Larget, B., & Ronquist, F. (2008). Efficiency of Markov chain Monte Carlo tree proposals in Bayesian phylogenetics. Systematic Biology, 57(1), 86–103. https://doi.org/10.1080/10635150801886156
   PubMed Web of Science ®Google Scholar
• Lanfear, R., Calcott, B., Ho, S. Y. W., & Guindon, S. (2012). Partitionfinder: Combined selection of partitioning schemes and substitution models for phylogenetic analyses. Molecular Biology and Evolution, 29(6), 1695–1701. https://doi.org/10.1093/molbev/mss020
   PubMed Web of Science ®Google Scholar
• Lanfear, R., Frandsen, P. B., Wright, A. M., Senfeld, T., & Calcott, B. (2017). PartitionFinder 2: New methods for selecting partitioned models of evolution for molecular and morphological phylogenetic analyses. Molecular Biology and Evolution, 34(3), 772–773. https://doi.org/10.1093/molbev/msw260
   PubMed Web of Science ®Google Scholar
• Larsson, A. (2014). AliView: A fast and lightweight alignment viewer and editor for large datasets. Bioinformatics, 30(22), 3276–3278. https://doi.org/10.1093/bioinformatics/btu531
   PubMed Web of Science ®Google Scholar
• Lepage, T., Bryant, D., Philippe, H., & Lartillot, N. (2007). A general comparison of relaxed molecular clock models. Molecular Biology and Evolution, 24(12), 2669–2680. https://doi.org/10.1093/molbev/msm193
   PubMed Web of Science ®Google Scholar
• Lewis, P. O. (2001). A likelihood approach to estimating phylogeny from discrete morphological character data. Systematic Biology, 50(6), 913–925. https://doi.org/10.1080/106351501753462876
   PubMed Web of Science ®Google Scholar
• Lin, C.-H., Brzobohatý, R., Nolf, D., & Girone, A. (2017). Tortonian teleost otoliths from northern Italy: Taxonomic synthesis and stratigraphic significance. European Journal of Taxonomy, 322, 1–44. https://doi.org/10.5852/ejt.2017.322
   Web of Science ®Google Scholar
• Linnaeus, C. (1758). Systema naturae Regnum animale. Guilielmi Engelmann.
   Google Scholar
• López-Antoñanzas, R., Mitchell, J. S., Simões, T. R., Condamine, F. L., Aguilée, R., Peláez-Campomanes, P., Renaud, S., Rolland, J., & Donoghue, P. C. J. (2022). Integrative phylogenetics: Tools for palaeontologists to explore the Tree of Life. Biology, 11(8), 1185. https://doi.org/10.3390/biology11081185
   PubMedGoogle Scholar
• Maddison, W. P., & Maddison, D. R. (2021). Mesquite: A modular system for evolutionary analysis (3.70) [Computer software]. http://www.mesquiteproject.org
   Google Scholar
• Marramà, G., Giusberti, L., & Carnevale, G. (2022). A Rupelian coral reef fish assemblage from the Venetian Southern Alps (Berici Hills, NE Italy). Rivista Italiana Di Paleontologia e Stratigrafia, 128(2), 469–513. https://doi.org/10.54103/2039-4942/16601
   Web of Science ®Google Scholar
• Martini, E., & Reichenbacher, B. (2007). Nannoplankton und Fisch-Otolithen in den Mittleren Pechelbronn-Schichten (Unter-Oligozän, Oberrheingraben/Mainzer Becken) [Nannoplankton and fish otoliths from the Middle Pechelbronn Beds (Early Oligocene, Upper Rhine Graben/Mainz Basin)]. Geologische Abhandlungen Hessen, 116, 235–273.
   Google Scholar
• McCraney, W. T., Thacker, C. E., & Alfaro, M. E. (2020). Supermatrix phylogeny resolves goby lineages and reveals unstable root of Gobiaria. Molecular Phylogenetics and Evolution, 151, 106862. https://doi.org/10.1016/j.ympev.2020.106862
   PubMed Web of Science ®Google Scholar
• McKay, S. I., & Miller, P. J. (1997). The affinities of European sand gobies (Teleostei: Gobiidae). Journal of Natural History, 31(10), 1457–1482. https://doi.org/10.1080/00222939700770791
   Web of Science ®Google Scholar
• Miller, M. A., Pfeiffer, W., & Schwartz, T. (2010). Creating the CIPRES Science Gateway for inference of large phylogenetic trees. Proceedings of the Gateway Computing Environments Workshop (GCE), 1, 1–8.
   Google Scholar
• Miller, P. J. (1973). The osteology and adaptive features of Rhyacichthys aspro (Teleostei: Gobioidei) and the classification of gobioid fishes. Journal of Zoology, 171(3), 397–434. https://doi.org/10.1111/j.1469-7998.1973.tb05347.x
   Google Scholar
• Miller, P. J. (1986). Gobiidae. In P. J. P. Whitehead, M.-L. Bauchot, J.-C. Hureau, J. Nielsen, & E. Tortonese (Eds.), Fishes of the north-eastern Atlantic and the Mediterranean (Vol. 3, pp. 1019–1085). UNESCO.
   Google Scholar
• Nelson, J. S., Grande, T. C., & Wilson, M. V. H. (Eds.). (2016). Fishes of the world (5th ed.). John Wiley & Sons.
   Google Scholar
• Obrhelová, N. (1961). Vergleichende Osteologie der tertiären Süßwasserfische Böhmens (Gobioidei). Sborník Ústředního Ústavu Gelogického, Oddíl Paleontologický, 26, 103–192.
   Google Scholar
• O’Reilly, J. E., Dos Reis, M., & Donoghue, P. C. J. (2015). Dating tips for divergence-time estimation. Trends in Genetics, 31(11), 637–650. https://doi.org/10.1016/j.tig.2015.08.001
   PubMed Web of Science ®Google Scholar
• Pallas, P. S. (1770). Spicilegia zoologica: quibus novae imprimis et obscurae animalium species iconibus, descriptionibus atque commentariis illustrantur (Vol. 1). Gottl. August. Lange, Berlin.
   Google Scholar
• Papazzoni, C. A., Carnevale, G., Fornaciari, E., Giusberti, L., & Trevisani, E. (2014). 4. The Pesciara-Monte Postale Fossil-Lagerstätte: 1. Biostratigraphy, sedimentology and depositional model. Rendiconti Della Società Paleontologica Italiana, 4, 29–36.
   Google Scholar
• Patzner, R., Van Tassell, J. L., Kovacic, M., & Kapoor, B. G. (Eds.). (2011). The biology of gobies (1st ed.). Science Publishers.
   Google Scholar
• Pezold, F. (2004). Phylogenetic analysis of the genus Gobionellus (Teleostei: Gobiidae). Copeia, 2004(2), 260–280. https://doi.org/10.1643/CI-02-218R3
   Google Scholar
• Popov, S. V., Rögl, F., Rozanov, A. Y., Steininger, F. F., Shcherba, I. G., & Kovac, M. (Eds.). (2004). Lithological-Paleogeographic maps of Paratethys: 10 maps Late Eocene to Pliocene (1st ed., Vol. 250). Schweizerbart Science Publishers.
   Google Scholar
• Přikryl, T. (2014). A new species of the sleeper goby (Gobioidei, Eleotridae) from the České Středohoří Mountains (Czech Republic, Oligocene) and analysis of the validity of the family Pirskeniidae. Paläontologische Zeitschrift, 88(2), 187–196. https://doi.org/10.1007/s12542-013-0188-y
   Google Scholar
• Pyron, R. A. (2017). Novel approaches for phylogenetic Inference from morphological data and total-evidence dating in squamate reptiles (lizards, snakes, and amphisbaenians). Systematic Biology, 66(1), 38–56. https://doi.org/10.1093/sysbio/syw068
   PubMed Web of Science ®Google Scholar
• Rambaut, A. (2018). FigTree. Tree figure drawing tool (1.4.4) [Computer software]. http://tree.bio.ed.ac.uk/software/figtree/
   Google Scholar
• Rambaut, A., Drummond, A. J., Xie, D., Baele, G., & Suchard, M. A. (2018). Posterior summarization in Bayesian phylogenetics using Tracer 1.7. Systematic Biology, 67(5), 901–904. https://doi.org/10.1093/sysbio/syy032
   PubMed Web of Science ®Google Scholar
• Rasser, M. W., Spiske, M., Battenstein, M., Achim, L., Ambrosius, R., Hanewinkel, A., & Müller, J. (2023). Neues von der Fossillagerstätte Öhninger Maar (Mittel-Miozän, Hegau) [News from the fossillagerstaette Öhningen Maar (Middle Miocene, Hegau)]. Jahresberichte und Mitteilungen des Oberrheinischen Geologischen Vereins, 105, 285–302. https://doi.org/10.1127/jmogv/105/0012
   Google Scholar
• Regan, C. T. (1911). The osteology and classification of the gobioid fishes. Annals and Magazine of Natural History, 8(48), 729–733. https://doi.org/10.1080/00222931108693090
   Google Scholar
• Reichenbacher, B., & Bannikov, A. F. (2022). Diversity of gobioid fishes in the late middle Miocene of northern Moldova, Eastern Paratethys – Part I: An extinct clade of Lesueurigobius look-alikes. PalZ, 96(1), 67–112. https://doi.org/10.1007/s12542-021-00573-8
   Web of Science ®Google Scholar
• Reichenbacher, B., & Bannikov, A. F. (2023). Diversity of gobioid fishes in the late middle Miocene of northern Moldova, Eastern Paratethys – Part II: description of †Moldavigobius helenae gen. et sp. nov. PalZ, 97(2), 365–381. https://doi.org/10.1007/s12542-022-00639-1
   Web of Science ®Google Scholar
• Reichenbacher, B., & Schwarz, J. (1997). Charophyten und Otolithen aus den Cyrenen-Schichten des nördlichen Alpenvorlandes [Charophytes and otoliths from the Cyrena Beds of the northern Alpine foreland]. Paläontologische Zeitschrift, 71(3), 173–188. https://doi.org/10.1007/BF02988486
   Google Scholar
• Reichenbacher, B., Gregorová, R., Holcová, K., Šanda, R., Vukić, J., & Přikryl, T. (2018). Discovery of the oldest Gobius (Teleostei, Gobiiformes) from a marine ecosystem of Early Miocene age. Journal of Systematic Palaeontology, 16(6), 493–513. https://doi.org/10.1080/14772019.2017.1313323
   Web of Science ®Google Scholar
• Reichenbacher, B., Krijgsman, W., Lataster, Y., Pippèrr, M., Van Baak, C. G. C., Chang, L., Kälin, D., Jost, J., Doppler, G., Jung, D., Prieto, J., Abdul Aziz, H., Böhme, M., Garnish, J., Kirscher, U., & Bachtadse, V. (2013). A new magnetostratigraphic framework for the Lower Miocene (Burdigalian/Ottnangian, Karpatian) in the North Alpine Foreland Basin. Swiss Journal of Geosciences, 106(2), 309–334. https://doi.org/10.1007/s00015-013-0142-8
   Web of Science ®Google Scholar
• Reichenbacher, B., Přikryl, T., Cerwenka, A. F., Keith, P., Gierl, C., & Dohrmann, M. (2020). Freshwater gobies 30 million years ago: New insights into character evolution and phylogenetic relationships of †Pirskeniidae (Gobioidei, Teleostei). PloS One, 15(8), e0237366. https://doi.org/10.1371/journal.pone.0237366
   PubMed Web of Science ®Google Scholar
• Reichenbacher, B., Vukić, J., Šanda, R., Schliewen, U. K., Esmaeili, H. R., & Kassar, A. (2023). Skeletal traits and otoliths can unravel the relationships within European Gobiidae (Gobius lineage sensu lato). Zoological Journal of the Linnean Society, zlad058. https://doi.org/10.1093/zoolinnean/zlad058
   Google Scholar
• Revell, L. J. (2024). phytools 2.0: An updated R ecosystem for phylogenetic comparative methods (and other things). PeerJ, 12, e16505. https://doi.org/10.7717/peerj.16505
   PubMed Web of Science ®Google Scholar
• Ronquist, F., Klopfstein, S., Vilhelmsen, L., Schulmeister, S., Murray, D. L., & Rasnitsyn, A. P. (2012). A total-evidence approach to dating with fossils, applied to the early radiation of the hymenoptera. Systematic Biology, 61(6), 973–999. https://doi.org/10.1093/sysbio/sys058
   PubMed Web of Science ®Google Scholar
• Ronquist, F., Lartillot, N., & Phillips, M. J. (2016). Closing the gap between rocks and clocks using total-evidence dating. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences, 371(1699), 20150136. https://doi.org/10.1098/rstb.2015.0136
   PubMed Web of Science ®Google Scholar
• Ronquist, F., Teslenko, M., van der Mark, P., Ayres, D. L., Darling, A., Höhna, S., Larget, B., Liu, L., Suchard, M. A., & Huelsenbeck, J. P. (2012). MrBayes 3.2: Efficient Bayesian phylogenetic inference and model choice across a large model space. Systematic Biology, 61(3), 539–542. https://doi.org/10.1093/sysbio/sys029
   PubMed Web of Science ®Google Scholar
• Rückert-Ülkümen, N. (1960). Trakya ve Canakkale mtakaiannda bulunan Neojen Balikli formasyonlan haklanda. Fen Fakultesi. Istanbul Üniversiti, Istanbul.
   Google Scholar
• Rückert-Ülkümen, N. (2000). Eine neue Fisch-Fauna aus dem Tertiär von Bergama (West-Türkei). Mitteilungen der Bayerischen Staatssammlung für Paläontologie und Historische Geologie, 40, 153–163.
   Google Scholar
• Rüppell, E. (1838). Neue Wirbelthiere zu der Fauna von Abyssinien gehörig. Fische des Rothen Meeres. S. Schmerber, Frankfurt.
   Google Scholar
• Sauvage, H. E. (1883). Notes sur les poissons fossiles. Bulletin de La Societe Geologique de France, 3(11), 475–503.
   Google Scholar
• Schneider, C. A., Rasband, W. S., & Eliceiri, K. W. (2012). NIH Image to ImageJ: 25 years of image analysis. Nature Methods, 9(7), 671–675. https://doi.org/10.1038/nmeth.2089
   PubMed Web of Science ®Google Scholar
• Schwarzhans, W. (Ed.) (2019). Reconstruction of the fossil marine bony fish fauna (Teleostei) from the Eocene to Pleistocene of New Zealand by means of otoliths: With studies of recent congroid, morid and trachinoid otoliths (Vol. 46). Museo Civico di Storia Naturale di Milano, Milano.
   Google Scholar
• Schwarzhans, W., Agiadi, K., & Carnevale, G. (2020). Late Miocene–Early Pliocene evolution of Mediterranean gobies and their environmental and biogeographic significance. Rivista Italiana di Paleontologia e Stratigrafia, 126(3), 657–724.
   Web of Science ®Google Scholar
• Schwarzhans, W., Ahnelt, H., Carnevale, G., Japundžić, S., Bradić, K., & Bratishko, A. (2017). Otoliths in situ from Sarmatian (Middle Miocene) fishes of the Paratethys. Part III: tales from the cradle of the Ponto-Caspian gobies. Swiss Journal of Palaeontology, 136(1), 45–92. https://doi.org/10.1007/s13358-016-0120-7
   Web of Science ®Google Scholar
• Schwarzhans, W., Brzobohatý, R., & Radwanska, U. (2020). Goby otoliths from the Badenian (middle Miocene) of the Central Paratethys from the Czech Republic, Slovakia and Poland: A baseline for the evolution of the European Gobiidae (Gobiiformes; Teleostei). Bollettino della Società Paleontologica Italiana, 59(2), 125–173.
   Web of Science ®Google Scholar
• Simões, T. R., Caldwell, M. W., Tałanda, M., Bernardi, M., Palci, A., Vernygora, O., Bernardini, F., Mancini, L., & Nydam, R. L. (2018). The origin of squamates revealed by a Middle Triassic lizard from the Italian Alps. Nature, 557(7707), 706–709. https://doi.org/10.1038/s41586-018-0093-3
   PubMed Web of Science ®Google Scholar
• Speijer, R. P., Pälike, H., Hollis, C. J., Hooker, J. J., & Ogg, J. G. (2020). Chapter 28 – The Paleogene period. In F. M. Gradstein, J. G. Ogg, M. D. Schmitz, & G. M. Ogg (Eds.), Geologic time scale 2020 (pp. 1087–1140). Elsevier.
   Google Scholar
• Springer, V. G. (1983). Tyson belos, new genus and species of Western Pacific fish (Gobiidae, Xenisthminae): With discussions of gobioid osteology and classification. Smithsonian Contributions to Zoology, 390, 1–40. https://doi.org/10.5479/si.00810282.390
   Google Scholar
• Stadler, T. (2010). Sampling-through-time in birth-death trees. Journal of Theoretical Biology, 267(3), 396–404. https://doi.org/10.1016/j.jtbi.2010.09.010
   PubMed Web of Science ®Google Scholar
• Steindachner, F. (1879). Ichthyologische Beiträge (VIII). Sitzungsberichte Der Kaiserlichen Akademie der Wissenschaften. Mathematisch-Naturwissenschaftliche Classe, 80, 119–191.
   Google Scholar
• Tavaré, S. (1986). Some probabilistic and statistical problems in the analysis of DNA sequences. Lectures on Mathematics in the Life Sciences, 17, 57–86.
   Google Scholar
• Temminck, C. J., & Schlegel, H. (1845). Pisces. In P. F. von Siebold (Ed.), Fauna japonica, sive, descriptio animalium, quae in itinere per Japoniam, jussu et auspiciis, superiorum, qui summum in India Batava imperium tenent, suscepto, annis 1823–1830 (pp. 113–172). Lugduni Batavorum, Apud Auctorem.
   Google Scholar
• Thacker, C. E. (2009). Phylogeny of Gobioidei and placement within Acanthomorpha, with a new classification and investigation of diversification and character evolution. Copeia, 2009(1), 93–104. https://doi.org/10.1643/CI-08-004
   Web of Science ®Google Scholar
• Thacker, C. E. (2013). Phylogenetic placement of the European sand gobies in Gobionellidae and characterization of gobionellid lineages (Gobiiformes: Gobioidei). Zootaxa, 3619(3), 369–382. https://doi.org/10.11646/zootaxa.3619.3.6
   PubMed Web of Science ®Google Scholar
• Thacker, C. E. (2014). Species and shape diversification are inversely correlated among gobies and cardinalfishes (Teleostei: Gobiiformes). Organisms, Diversity & Evolution, 14(4), 419–436. https://doi.org/10.1007/s13127-014-0175-5
   Web of Science ®Google Scholar
• Thacker, C. E. (2015). Biogeography of goby lineages (Gobiiformes: Gobioidei): Origin, invasions and extinction throughout the Cenozoic. Journal of Biogeography, 42(9), 1615–1625. https://doi.org/10.1111/jbi.12545
   Web of Science ®Google Scholar
• Thacker, C. E., & Hardman, M. A. (2005). Molecular phylogeny of basal gobioid fishes: Rhyacichthyidae, Odontobutidae, Xenisthmidae, Eleotridae (Teleostei: Perciformes: Gobioidei). Molecular Phylogenetics and Evolution, 37(3), 858–871. https://doi.org/10.1016/j.ympev.2005.05.004
   PubMed Web of Science ®Google Scholar
• Thacker, C. E., McCraney, W. T., Harrington, R. C., Near, T. J., Shelley, J. J., Adams, M., Hammer, M. P., & Unmack, P. J. (2023). Diversification of the sleepers (Gobiiformes: Gobioidei: Eleotridae) and evolution of the root gobioid families. Molecular Phylogenetics and Evolution, 186, 107841. https://doi.org/10.1016/j.ympev.2023.107841
   PubMed Web of Science ®Google Scholar
• Thacker, C. E., Satoh, T. P., Katayama, E., Harrington, R. C., Eytan, R. I., & Near, T. J. (2015). Molecular phylogeny of Percomorpha resolves Trichonotus as the sister lineage to Gobioidei (Teleostei: Gobiiformes) and confirms the polyphyly of Trachinoidei. Molecular Phylogenetics and Evolution, 93, 172–179. https://doi.org/10.1016/j.ympev.2015.08.001
   PubMed Web of Science ®Google Scholar
• Tornabene, L., Chen, Y., & Pezold, F. (2013). Gobies are deeply divided: Phylogenetic evidence from nuclear DNA (Teleostei: Gobioidei: Gobiidae). Systematics and Biodiversity, 11(3), 345–361. https://doi.org/10.1080/14772000.2013.818589
   Web of Science ®Google Scholar
• Tougard, C., Folly, J., & Berrebi, P. (2014). New light on the evolutionary history of the common goby (Pomatoschistus microps) with an emphasis on colonization processes in the Mediterranean Sea. PloS One, 9(3), e91576. https://doi.org/10.1371/journal.pone.0091576
   PubMed Web of Science ®Google Scholar
• Tougard, C., Vukić, J., Ahnelt, H., Buj, I., Kovačić, M., Moro, G. A., Tutman, P., & Šanda, R. (2021). Quaternary climatic cycles promoted (re)colonization and diversification events in Adriatic sand gobies. Journal of Zoological Systematics and Evolutionary Research, 59(5), 1037–1052. https://doi.org/10.1111/jzs.12468
   Web of Science ®Google Scholar
• Valenciennes, A. (1837). Histoire naturelle des poissons (G. Cuvier & A. Valenciennes, Eds.; Vol. 12). F. G. Levrault.
   Google Scholar
• Whitley, G. P. (1945). New sharks and fishes from western Australia. Pt. 2. The Australian Zoologist, 11(1), 1–42.
   Google Scholar
• Wiley, E. O., & Johnson, G. D. (2010). A teleost classification based on monophyletic groups. In J. S. Nelson, H.-P. Schultze, & M. V. H. Wilson (Eds.), Origin and phylogenetic interrelationships of teleosts (pp. 123–182). Verlag Dr. Friedrich Pfeil.
   Google Scholar
• Winterbottom, R. (1993). Search for the Gobioid sister group (Actinopterygii: Percomorpha). Bulletin of Marine Science, 52(1), 395–414.
   Web of Science ®Google Scholar
• Yang, Z. (1993). Maximum-likelihood estimation of phylogeny from DNA sequences when substitution rates differ over sites. Molecular Biology and Evolution, 10(6), 1396–1401.
   PubMed Web of Science ®Google Scholar
• Zhang, C., Stadler, T., Klopfstein, S., Heath, T. A., & Ronquist, F. (2016). Total-evidence dating under the fossilized birth-death process. Systematic Biology, 65(2), 228–249. https://doi.org/10.1093/sysbio/syv080
   PubMed Web of Science ®Google Scholar
• Zharkikh, A. (1994). Estimation of evolutionary distances between nucleotide sequences. Journal of Molecular Evolution, 39(3), 315–329. https://doi.org/10.1007/BF00160155
   PubMed Web of Science ®Google Scholar