Advanced search
Publication Cover
Expert Review of Proteomics Volume 17, 2020 - Issue 2
Submit an article Journal homepage
1,161
Views
5
CrossRef citations to date
0
Altmetric
Editorial

What will neXtProt help us achieve in 2020 and beyond?

Monique Zahn-ZabalCALIPHO Group, SIB Swiss Institute of Bioinformatics and University of Geneva, Geneva, SwitzerlandView further author information
&
Lydie LaneCALIPHO Group, SIB Swiss Institute of Bioinformatics and University of Geneva, Geneva, SwitzerlandCorrespondence[email protected]
View further author information
Pages 95-98 | Received 12 Dec 2019, Accepted 17 Feb 2020, Published online: 25 Feb 2020

References

  • Legrain P, Aebersold R, Archakov A, et al. The human proteome project: current state and future direction. Mol Cell Proteomics. 2011. DOI:10.1074/mcp.O111.009993.
  • Zahn-Zabal M, Michel P-A, Gateau A, et al. The neXtProt knowledgebase in 2020: data, tools and usability improvements. Nucleic Acids Res. 2019;48(D1):D328–D334..
  • Lane L, Bairoch A, Beavis RC, et al. Metrics for the human proteome project 2013–2014 and strategies for finding missing proteins. J Proteome Res. 2014;13:15–20.
  • Omenn GS, Lane L, Overall CM, et al. Progress on identifying and characterizing the human proteome: 2019 metrics from the HUPO human proteome project. J Proteome Res. 2019;18:4098–4107.
  • Paik Y-K, Lane L, Kawamura T, et al. Launching the C-HPP pilot project for functional characterization of identified proteins with no known function. J Proteome Res. 2018;17:4042–4050. .
  • Doll S, Burlingame AL. Mass spectrometry-based detection and assignment of protein posttranslational modifications. ACS Chem Biol. 2015;10:63–71.
  • Deutsch EW, Lane L, Overall CM, et al. Human proteome project mass spectrometry data interpretation guidelines 3.0. J Proteome Res. 2019;18:4108–4116.
  • Deutsch EW, Sun Z, Campbell D, et al. State of the human proteome in 2014/2015 as viewed through PeptideAtlas: enhancing accuracy and coverage through the AtlasProphet. J Proteome Res. 2015;14:3461–3473.
  • Wang M, Wang J, Carver J, et al. Assembling the community-scale discoverable human proteome. Cell Syst. 2018;7:412–421.e5.
  • Schaeffer M, Gateau A, Teixeira D, et al. The neXtProt peptide uniqueness checker: a tool for the proteomics community. Bioinformatics. 2017;33:3471–3472.
  • Duek P, Gateau A, Bairoch A, et al. Exploring the uncharacterized human proteome using neXtProt. J Proteome Res. 2018;17:4211–4226.
  • Binz P-A, Shofstahl J, Vizcaíno JA, et al. Proteomics standards initiative extended FASTA format. J Proteome Res. 2019;18:2686–2692.
  • Thul PJ, Lindskog C. The human protein atlas: A spatial map of the human proteome. Protein Sci. 2018;27:233–244.
  • Duek P, Lane L. Worming into the uncharacterized human proteome. J Proteome Res. 2019;18:4143–4153.
  • Zhang C, Lane L, Omenn GS, et al. Blinded testing of function annotation for uPE1 proteins by I-TASSER/COFACTOR pipeline using the 2018–2019 additions to neXtProt and the CAFA3 challenge. J Proteome Res. 2019;18:4154–4166.

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Order Reprints Request Corporate Permissions

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

Request Academic Permissions

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.

Related research

People also read lists articles that other readers of this article have read.

Recommended articles lists articles that we recommend and is powered by our AI driven recommendation engine.

Cited by lists all citing articles based on Crossref citations.
Articles with the Crossref icon will open in a new tab.