171
Views
1
CrossRef citations to date
0
Altmetric
Articles

The influence of polycyclic aromatic hydrocarbons in protein profile of Medicago sativa L.

, , , , , , & show all

References

  • Ahammed GJ, Wang MM, Zhou YH, Xia XJ, Mao WH, Shi K, Yu JQ. 2012. The growth, photosynthesis and antioxidant defense responses of five vegetable crops to phenanthrene stress. Ecotoxicol Environ Saf. 80:132–139. doi:10.1016/j.ecoenv.2012.02.015.
  • Alves WS, Manoel EA, Santos NS, Nunes RO, Domiciano GC, Soares MR. 2018. Phytoremediation of polycyclic aromatic hydrocarbons (PAH) by cv. Crioula: A Brazilian alfalfa cultivar. Int J Phytoremediat. 20(8):747–755. doi:10.1080/15226514.2018.1425663.
  • Benedetti CE, Costa CL, Turcinelli SR, Arruda P. 1998. Differential expression of a novel gene in response to coronatine, methyl jasmonate, and wounding in the coi1 mutant of arabidopsis. Plant Physiol. 116(3):1037–1042. doi:10.1104/pp.116.3.1037.
  • Bosch R, Moore ER, García-Valdés E, Pieper DH. 1999. NahW, a novel, inducible salicylate hydroxylase involved in mineralization of naphthalene by Pseudomonas stutzeri AN10. J Bacteriol. 181(8):2315–2322. doi:10.1128/JB.181.8.2315-2322.1999.
  • Bradford MM. 1976. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem. 72:248–254. doi:10.1016/0003-2697(76)90527-3.
  • Candiano G, Bruschi M, Musante L, Santucci L, Ghiggeri GM, Carnemolla B, Orecchia P, Zardi L, Righetti PG. 2004. Blue silver: a very sensitive colloidal Coomassie G-250 staining for proteome analysis. Electrophoresis. 25(9):1327–1333. doi:10.1002/elps.200305844.
  • Chakrabarty A, Aditya M, Dey N, Banik N, Bhattacharjee S. 2016. Antioxidant signaling and redox regulation in drought- and salinity-stressed plants. In: Hossain M, Wani S, Bhattacharjee S, Burritt D, Tran LS, editors. Drought stress tolerance in plants. Vol. 1. Cham: Springer. p. 465–498.
  • Cummins I, Wortley DJ, Sabbadin F, He Z, Coxon CR, Straker HE, Sellars JD, Knight K, Edwards L, Hughes D, et al. 2013. Key role for a glutathione transferase in multiple-herbicide resistance in grass weeds. Proc Natl Acad Sci. 110(15):5812–5817. doi:10.1073/pnas.1221179110.
  • Dixon DP, Edwards R. 2006. Enzymes of tyrosine catabolism in Arabidopsis thaliana. Plant Sci. 171(3):360–366. doi:10.1016/j.plantsci.2006.04.008.
  • Dixon DP, Edwards R. 2010. Glutathione transferases. Arabidopsis book. 8:e0131. doi:10.1199/tab.0131.
  • Dubrovskaya E, Pozdnyakova N, Golubev S, Muratova A, Grinev V, Bondarenkova A, Turkovskaya O. 2017. Peroxidases from root exudates of Medicago sativa and Sorghum bicolor: catalytic properties and involvement in PAH degradation. Chemosphere. 169:224–232. doi:10.1016/j.chemosphere.2016.11.027.
  • Dumas AS, Taconnat L, Barbas E, Rigaill G, Catrice O, Bernard D, Benamar A, Macherel D, Amrani AE, Berthomé R. 2016. Unraveling the early molecular and physiological mechanisms involved in response to phenanthrene exposure. BMC Genomics. 17(1):818. doi:10.1186/s12864-016-3133-0.
  • Edwards R, Dixon DP, Cummins I, Brazier-Hicks M, Skipsey M. 2011. New perspectives on the metabolism and detoxification of synthetic compounds in plants. In: Schröder P, Collins C, editors. Organic xenobiotics and plants. Plant ecophysiology. Vol 8. Dordrecht: Springer. p. 125–148.
  • Fan S, Li P, Gong Z, Ren W, He N. 2008. Promotion of pyrene degradation in rhizosphere of alfalfa (Medicago sativa L.). Chemosphere. 71(8):1593–1598. doi:10.1016/j.chemosphere.2007.10.068.
  • Fang J, Barcelona MJ. 2003. Coupled oxidation of aromatic hydrocarbons by horseradish peroxidase and hydrogen peroxide. Chemosphere. 50(1):105–109. doi:10.1016/S0045-6535(02)00488-5.
  • Gao Y, Li Q, Ling W, Zhu X. 2011. Arbuscular mycorrhizal phytoremediation of soils contaminated with phenanthrene and pyrene. J Hazard Mater. 185(2–3):703–709. doi:10.1016/j.jhazmat.2010.09.076.
  • Huang L, Hu H, Tang H, Liu Y, Xu P, Shi J, Lin K, Luo Q, Cui CZ. 2015. Identification and characterization of a novel gentisate 1,2-dioxygenase gene from a halophilic Martelella strain. Sci Rep. 5(1):14307. doi:10.1038/srep14307.
  • Jez JM, Fukagawa NK. 2008. Plant Sulfur Compounds and Human Health. In: Jez JM, editor. Sulfur: a missing link between soils, crops, and nutrition. Agronomy Monograph 50, Madison (WI): ASA-CSSASSSA Publishing. p. 281–291.
  • Kirk JL, Klironomos JN, Lee H, Trevors JT. 2005. The effects of perennial ryegrass and alfalfa on microbial abundance and diversity in petroleum contaminated soil. Environ Pollut. 133(3):455–465. doi:10.1016/j.envpol.2004.06.002.
  • Klein D, Fink B, Arold B, Eisenreich W, Schwab W. 2007. Functional characterization of enone oxidoreductases from strawberry and tomato fruit. J Agric Food Chem. 55(16):6705–6711. doi:10.1021/jf071055o.
  • Knoll M, Pleiss J. 2008. The medium-chain dehydrogenase/reductase engineering database: a systematic analysis of a diverse protein family to understand sequence-structure-function relationship. Protein Sci. 17(10):1689–1697. doi:10.1110/ps.035428.108.
  • Kogevinas M, Gwinn WM, Kriebel D, Phillips DH, Sim M, Bertke SJ, Calaf GM, Colosio C, Fritz JM, Fukushima S, et al. 2018. Carcinogenicity of quinoline, styrene, and styrene-7,8-oxide. Lancet Oncol. 19(6):728–729. doi:10.1016/S1470-2045(18)30316-4.
  • Labrou NE, Papageorgiou AC, Pavli O, Flemetakis E. 2015. Plant GSTome: structure and functional role in xenome network and plant stress response. Curr Opin Biotechnol. 32:186–194. doi:10.1016/j.copbio.2014.12.024.
  • Laemmli UK. 1970. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature. 227(5259):680–685. doi:10.1038/227680a0.
  • Landmeyer JE. 2012. Introduction to phytoremediation of contaminated groundwater. In: Historical foundation, hydrologic control, and contaminant remediation. Dordrecht: Springer.
  • Liao C, Peng Y, Ma W, Liu R, Li C, Li X. 2012. Proteomic analysis revealed nitrogen-mediated metabolic, developmental, and hormonal regulation of maize (Zea mays L.) ear growth. J Exp Bot. 63(14):5275–5288. doi:10.1093/jxb/ers187.
  • Liu H, Weisman D, Tang L, Tan L, Zhang W, Wang Z, Huang Y, Lin W, Liu X, Colón-Carmona A. 2015. Stress signaling in response to polycyclic aromatic hydrocarbon exposure in Arabidopsis thaliana involves a nucleoside diphosphate kinase, NDPK-3. Planta. 241(1):95–107. doi:10.1007/s00425-014-2161-8.
  • Ma B, Wang J, Xu M, He Y, Wang H, Wu L, Xu J. 2012. Evaluation of dissipation gradients of polycyclic aromatic hydrocarbons in rice rhizosphere utilizing a sequential extraction procedure. Environ Pollut. 162:413–421. doi:10.1016/j.envpol.2011.10.034.
  • Mangeon A, Junqueira RM, Sachetto-Martins G. 2010. Functional diversity of the plant glycine-rich proteins superfamily. Plant Signal Behav. 5(2):99–104. doi:10.4161/psb.5.2.10336.
  • Pandey VP, Awasthi M, Singh S, Tiwari S, Dwivedi UN. 2017. A comprehensive review on function and application of plant peroxidases. Biochem Anal Biochem. 06(01):308. doi:10.4172/2161-1009.1000308.
  • Pelloux J, Rusterucci C, Mellerowicz EJ. 2007. New insights into pectin methylesterase structure and function. Trends Plant Sci. 12(6):267–277. doi:10.1016/j.tplants.2007.04.001.
  • Pilon-Smits E. 2005. Phytoremediation. Annu Rev Plant Biol. 56:15–39. doi:10.1146/annurev.arplant.56.032604.144214.
  • Rappsilber J, Mann M, Ishihama Y. 2007. Protocol for micro-purification, enrichment, pre-fractionation and storage of peptides for proteomics using StageTips. Nat Protoc. 2(8):1896–1906. doi:10.1038/nprot.2007.261.
  • Reilley KA, Banks MK, Schwab AP. 1996. Dissipation of polycyclic aromatic hydrocarbons in the rhizosphere. J Environ Qual. 25(2):212–219. doi:10.2134/jeq1996.00472425002500020002x.
  • Rodrigues SP, Ventura JÁ, Zingali RB, Fernandes PMB. 2009. Evaluation of sample preparation methods for the analysis of papaya leaf proteins through two-dimensional gel electrophoresis. Phytochem Anal. 20(6):456–464. doi:10.1002/pca.1147.
  • Sandermann H. 1994. Higher plant metabolism of xenobiotics: the “green liver” concept. Pharmacogenetics. 4(5):225–241. doi:10.1097/00008571-199410000-00001.
  • Sandermann H. 1999. Plant metabolism of organic xenobiotics. Status and Prospects of the ‘Green Liver’ Concept. In: Altman A, Ziv M, Izhar S, editors. Plant Biotechnology and In Vitro Biology in the 21st Century. Current plant science and biotechnology in agriculture. Vol. 36. Dordrecht: Springer. p. 321–328.
  • Shen Y, Du J, Yue L, Zhan X. 2016. Proteomic analysis of plasma membrane proteins in wheat roots exposed to phenanthrene. Environ Sci Pollut Res Int. 23(11):10863–10871. doi:10.1007/s11356-016-6307-z.
  • Shen Y, Li J, Gu R, Zhan X, Xing B. 2019. Proteomic analysis for phenanthrene-elicited wheat chloroplast deformation. Environ Int. 123:273–281. doi:10.1016/j.envint.2018.11.074.
  • Shi H, Liu W, Yao Y, Wei Y, Chan Z. 2017. Alcohol dehydrogenase 1 (ADH1) confers both abiotic and biotic stress resistance in Arabidopsis. Plant Sci. 262:24–31. doi:10.1016/j.plantsci.2017.05.013.
  • Singh DP, Prabha R, Gupta VK, Verma MK. 2018. Metatranscriptome analysis deciphers multifunctional genes and enzymes linked with the degradation of aromatic compounds and pesticides in the wheat rhizosphere. Front Microbiol. 9:1331. doi:10.3389/fmicb.2018.01331.
  • Sivasankar S, Sheldrick B, Rothstein SJ. 2000. Expression of allene oxide synthase determines defense gene activation in tomato. Plant Physiol. 122(4):1335–1342. doi:10.1104/pp.122.4.1335.
  • Tervahauta AI, Fortelius C, Tuomainen M, Åkerman M-L, Rantalainen K, Sipilä T, Lehesranta SJ, Koistinen KM, Kärenlampi S, Yrjälä K. 2009. Effect of birch (Betula spp.) and associated rhizoidal bacteria on the degradation of soil polyaromatic hydrocarbons, PAH-induced changes in birch proteome and bacterial community. Environ Pollut. 157(1):341–346. doi:10.1016/j.envpol.2008.06.031.
  • Thompson CE, Fernandes CL, Norberto de Souza O, de Freitas LB, Salzano FM. 2010. Evaluation of the impact of functional diversification on Poaceae, Brassicaceae, Fabaceae, and Pinaceae alcohol dehydrogenase enzymes. J Mol Model. 16(5):919–928. doi:10.1007/s00894-009-0576-0.
  • Timm DE, Mueller HA, Bhanumoorthy P, Harp JM, Bunick GJ. 1999. Crystal structure and mechanism of a carbon–carbon bond hydrolase. Structure. 7(9):1023–1033. doi:10.1016/S0969-2126(99)80170-1.
  • Turkovskaya O, Muratova A. 2019. Plant–bacterial degradation of polyaromatic hydrocarbons in the rhizosphere. Trends Biotechnol. 37(9):926–930. doi:10.1016/j.tibtech.2019.04.010.
  • Turkovskaya OV, Pozdnyakova NN, Muratova AY, Dubrovskaya EV, Golubev SN. 2018. Potential of plants and microorganisms to degrade polycyclic aromatic hydrocarbons. BMCS. 10(2):193–201. doi:10.31301/2221-6197.bmcs.2018-27.
  • Uhlik O, Wald J, Strejcek M, Musilova L, Ridl J, Hroudova M, Vlcek C, Cardenas E, Mackova M, Macek T. 2012. Identification of bacteria utilizing biphenyl, benzoate, and naphthalene in long-term contaminated soil. Plos One. 7(7):e40653. doi:10.1371/journal.pone.0040653.
  • Wang MC, Chen YT, Chen SH, Chang-Chien SW, Sunkara SV. 2012. Phytoremediation of pyrene contaminated soils amended with compost and planted with ryegrass and alfalfa. Chemosphere. 87(3):217–225. doi:10.1016/j.chemosphere.2011.12.063.
  • Witzel K, Weidner A, Surabhi GK, Börner A, Mock HP. 2009. Salt stress-induced alterations in the root proteome of barley genotypes with contrasting response towards salinity. J Exp Bot. 60(12):3545–3557. doi:10.1093/jxb/erp198.
  • Xu SY, Chen YX, Wu WX, Zheng SJ, Xue SG, Yang SY, Peng YJ. 2007. Protein changes in response to pyrene stress in maize (Zea mays L.) leaves. J Integrative Plant Biol. 49(2):187–195. doi:10.1111/j.1744-7909.2007.00284.x.
  • Yano H, Kuroda M. 2006. Disulfide proteome yields a detailed understanding of redox regulations: a model study of thioredoxin-linked reactions in seed germination. Proteomics. 6(1):294–300. doi:10.1002/pmic.200402033.
  • Zhan X, Zhu M, Shen Y, Yue L, Li J, Gardea-Torresdey JL, Xu G. 2018. Apoplastic and symplastic uptake of phenanthrene in wheat roots. Environ Pollut. 233:331–339. doi:10.1016/j.envpol.2017.10.056.
  • Zhang X, Liu X, Chai W, Wei J, Wang Q, Li B, Li H. 2013. The use of proteomic analysis for exploring the phytoremediation mechanism of Scirpus triqueter to pyrene. J Hazardous Mater. 260:1001–1007. doi:10.1016/j.jhazmat.2013.06.068.
  • Zhi T, Zhou Z, Huang Y, Han C, Liu Y, Zhu Q, Ren C. 2016. Sugar suppresses cell death caused by disruption of fumarylacetoacetate hydrolase in Arabidopsis. Planta. 244(3):557–571. doi:10.1007/s00425-016-2530-6.

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.