Evaluation of suitable DNA regions for molecular identification of high value medicinal plants in genus Kaempferia

References

• Larsen, K. L.S. Gingers of Thailand. Queen Sirikit Botanic Garden; The Botanical Garden Organization: Chiang Mai, 2006.
   Google Scholar
• Sirirugsa, P. The genus Kaempferia (Zingiberaceae) in Thailand, Nord J Bot. 1989, 9, 257–260. doi:10.1111/j.1756-1051.1989.tb00999.x.
   Web of Science ®Google Scholar
• Sirirugsa, P. Taxonomy of the genus Kaempferia (Zingiberaceae) in Thailand, Thai For Bull. 1992, 19, 1–15.
   Google Scholar
• Picheansoonthon, P.; Koonterm, S. Notes on the genus Kaempferia L. (Zingiberaceae) in Thailand. J Thai Trad Alt Med. 2008, 6, 27–51.
   Google Scholar
• Schumann, K. Zingiberaceae. In: Das pflanzenreich; Engler, A and Engelmann W. (eds.); Weinheim Germany, 1903.
   Google Scholar
• Kam, Y. K. Taxonomic studies in the genus Kaempferia (Zingiberaceae). Notes RBG Edinb. 1980, 38, 1–12.
   Google Scholar
• Saensouk, S.; Jenjittikul, T. Kaempferia grandifolia sp nov (Zingiberaceae) a new species from Thailand. Nord J Bot. 2001, 21, 139–142. doi:10.1111/j.1756-1051.2001.tb01349.x.
   Web of Science ®Google Scholar
• Osathanunkul, M.; Madesis, P.; de Boer, H. Bar-HRM for Authentication of Plant-Based Medicines: Evaluation of Three Medicinal Products Derived from Acanthaceae Species. Plos One. 2015, 10, 1–11. doi:10.1371/journal.pone.0128476.
   Web of Science ®Google Scholar
• Singtonat, S.; Osathanunkul, M. Fast and reliable detection of toxic Crotalaria spectabilis Roth. in Thunbergia laurifolia Lindl. herbal products using DNA barcoding coupled with HRM analysis. BMC Complement Altern Med. 2015, 15, 1–8. doi:10.1186/s12906-015-0692-6.
   PubMed Web of Science ®Google Scholar
• Chen, S. L.; Yao, H.; Han, J. P.; Liu, C.; Song, J. Y.; Shi, L. C.; Zhu, Y. J.; Ma, X. Y.; Gao, T.; Pang, X. H.; Luo, K.; Li, Y.; Li, X. W.; Jia, X. C.; Lin, Y. L.; Leon, C. Validation of the ITS2 Region as a Novel DNA Barcode for Identifying Medicinal Plant Species. Plos One. 2010, 5, 1–8.
   Web of Science ®Google Scholar
• Coghlan, M. L.; Haile, J.; Houston, J.; Murray, D. C.; White, N. E.; Moolhuijzen, P.; Bellgard, M. I.; Bunce, M. Deep Sequencing of Plant and Animal DNA Contained within Traditional Chinese Medicines Reveals Legality Issues and Health Safety Concerns. PLoS Genet. 2012, 8, 436–446. doi:10.1371/journal.pgen.1002657.
   Web of Science ®Google Scholar
• de Boer, H. J.; Ouarghidi, A.; Martin, G.; Abbad, A.; Kool, A. DNA Barcoding Reveals Limited Accuracy of Identifications Based on Folk Taxonomy. Plos One. 2014, 9, 1–7. doi:10.1371/journal.pone.0084291.
   Web of Science ®Google Scholar
• Li, M.; Cao, H.; But, P. P. H.; Shaw, P. C. Identification of herbal medicinal materials using DNA barcodes. J Syst Evol. 2011, 49, 271–283. doi:10.1111/j.1759-6831.2011.00132.x.
   Web of Science ®Google Scholar
• Techen, N.; Parveen, I.; Pan, Z. Q.; Khan, I. A. DNA barcoding of medicinal plant material for identification. Curr Opin Biotechnol. 2014, 25, 103–110. doi:10.1016/j.copbio.2013.09.010.
   PubMed Web of Science ®Google Scholar
• Sarkinen, T.; Staats, M.; Richardson, J. E.; Cowan, R. S.; Bakker, F. T. How to open the treasure chest? Optimising DNA extraction from herbarium specimens. PLoS One. 2012, 7, e43808. doi:10.1371/journal.pone.0043808.
   PubMed Web of Science ®Google Scholar
• Piredda, R.; Simeone, M. C.; Attimonelli, M.; Bellarosa, R.; Schirone, B. Prospects of barcoding the Italian wild dendroflora: oaks reveal severe limitations to tracking species identity. Mol Ecol Resour. 2011, 11, 72–83. doi:10.1111/j.1755-0998.2010.02900.x.
   PubMed Web of Science ®Google Scholar
• Sass, C.; Little, D. P.; Stevenson, D. W.; Specht, C. D. DNA barcoding in the cycadales: testing the potential of proposed barcoding markers for species identification of cycads. PLoS One. 2007, 2, e1154. doi:10.1371/journal.pone.0001154.
   PubMed Web of Science ®Google Scholar
• Stoeckle, M. Y.; Gamble, C. C.; Kirpekar, R.; Young, G.; Ahmed, S.; Little, D. P. Commercial teas highlight plant DNA barcode identification successes and obstacles. Sci Rep. 2011, 1, 42. doi:10.1038/srep00042.
   PubMed Web of Science ®Google Scholar
• Reed, G. H.; Wittwer, C. T. Sensitivity and specificity of single-nucleotide polymorphism scanning by high-resolution melting analysis. Clin Chem. 2004, 50, 1748–1754. doi:10.1373/clinchem.2003.029751.
   PubMed Web of Science ®Google Scholar
• Reja, V.; Kwok, A.; Stone, G.; Yang, L. S.; Missel, A.; Menzel, C.; Bassam, B. ScreenClust: Advanced statistical software for supervised and unsupervised high resolution melting (HRM) analysis. Methods. 2010, 50, S10–S14. doi:10.1016/j.ymeth.2010.02.006.
   PubMed Web of Science ®Google Scholar
• Ririe, K. M.; Rasmussen, R. P.; Wittwer, C. T. Product differentiation by analysis of DNA melting curves during the polymerase chain reaction. Anal Biochem. 1997, 245, 154–160. doi:10.1006/abio.1996.9916.
   PubMed Web of Science ®Google Scholar
• Wittwer, C. T.; Reed, G. H.; Gundry, C. N.; Vandersteen, J. G.; Pryor, R. J. High-resolution genotyping by amplicon melting analysis using LCGreen. Clin Chem. 2003, 49, 853–860. doi:10.1373/49.6.853.
   PubMed Web of Science ®Google Scholar
• Osathanunkul, M.; Suwannapoom, C.; Ounjai, S.; Rora, J. A.; Madesis, P.; de Boer, H. Refining DNA Barcoding Coupled High Resolution Melting for Discrimination of 12 Closely Related Croton Species. Plos One. 2015, 10, 1–14. doi:10.1371/journal.pone.0138888.
   Web of Science ®Google Scholar
• Osathanunkul, M.; Suwannapoom, C.; Khamyong, N.; Pintakum, D.; Lamphun, S. N.; Triwitayakorn, K.; Osathanunkul, K.; Madesis, P. Hybrid analysis (barcode-high resolution melting) for authentication of Thai herbal products, Andrographis paniculata (Burm.f.) Wall.ex Nees. Pharmacogn Mag. 2016, 12, S71–75. doi:10.4103/0973-1296.176112.
   PubMed Web of Science ®Google Scholar
• Tamura, K.; Peterson, D.; Peterson, N.; Stecher, G.; Nei, M.; Kumar, S. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol. 2011, 28, 2731–2739. doi:10.1093/molbev/msr121.
   PubMed Web of Science ®Google Scholar
• Reed, G. H.; Wittwer, C. T. Sensitivity and Specificity of Single-Nucleotide Polymorphism Scanning by High-Resolution Melting Analysis. Clin Chem, 2004, 50, 1748. doi:10.1373/clinchem.2003.029751.
   PubMed Web of Science ®Google Scholar
• Gao, T.; Yao, H.; Song, J. Y.; Liu, C.; Zhu, Y. J.; Ma, X. Y.; Pang, X. H.; Xu, H. X.; Chen, S. L. Identification of medicinal plants in the family Fabaceae using a potential DNA barcode ITS2. J Ethnopharmacol. 2010, 130, 116–121. doi:10.1016/j.jep.2010.04.026.
   PubMed Web of Science ®Google Scholar
• Li, D. Z.; Gao, L. M.; Li, H. T.; Wang, H.; Ge, X. J.; Liu, J. Q.; Chen, Z. D.; Zhou, S. L.; Chen, S. L.; Yang, J. B.; Fu, C. X.; Zeng, C. X.; Yan, H. F.; Zhu, Y. J.; Sun, Y. S.; Chen, S. Y.; Zhao, L.; Wang, K.; Yang, T.; Duan, G. W.; Grp, C. P. B. Comparative analysis of a large dataset indicates that internal transcribed spacer (ITS) should be incorporated into the core barcode for seed plants. Proc Natl Acad Sci U S A. 2011, 108, 19641–19646. doi:10.1073/pnas.1104551108.
   PubMed Web of Science ®Google Scholar
• Fazekas, A. J.; Burgess, K. S.; Kesanakurti, P. R.; Graham, S. W.; Newmaster, S. G.; Husband, B. C.; Percy, D. M.; Hajibabaei, M.; Barrett, S. C. H. Multiple Multilocus DNA Barcodes from the Plastid Genome Discriminate Plant Species Equally Well. Plos One. 2008, 3, 1–12. doi:10.1371/journal.pone.0002802.
   Web of Science ®Google Scholar
• Kres, W. J.; Wurdack, K. J.; Zimmer, E. A.; Weigt, L. A.; Janzen, D. H. Use of DNA barcodes to identify flowering plants. Proc Natl Acad Sci U S A. 2005, 102, 8369–8374. doi:10.1073/pnas.0503123102.
   PubMed Web of Science ®Google Scholar
• Osathanunkul, M.; Suwannapoom, C.; Osathanunkul, K.; Madesis, P.; de Boer, H. Evaluation of DNA barcoding coupled high resolution melting for discrimination of closely related species in phytopharmaceuticals. Phytomedicine. 2016, 23, 156–165. doi:10.1016/j.phymed.2015.11.018.
   PubMed Web of Science ®Google Scholar