Optical Tweezers as a Probe for Oligodeoxyribonucleotide Structuration

REFERENCES

• Shafer , R. H. and Smirnov , I. 2001 . Biological aspects of DNA/RNA quadruplexes . Biopolymers , 56 : 209 – 227 .
   Web of Science ®Google Scholar
• Arthanari , H. and Bolton , P. H. 2001 . Functional and dysfunctional roles of quadruplex DNA in cells . Chem. Biol. , 8 : 221 – 230 .
   PubMed Web of Science ®Google Scholar
• Jing , N. , Marchand , C. , Guan , Y. , Liu , J. , Pallansch , L. , Lackman-Smith , C. , De Clercq , E. and Pommier , Y. 2001 . Structure-activity of inhibition of HIV-1 integrase and virus replication by G-quartet oligonucleotides . DNA Cell Biol. , 20 : 499 – 508 .
   PubMed Web of Science ®Google Scholar
• Smirnov , I. and Shafer , R. H. 2000 . Effect of loop sequence and size on DNA aptamer stability . Biochemistry , 39 : 1462 – 1468 .
   PubMed Web of Science ®Google Scholar
• Pileur , F. , Andreola , M. L. , Dausse , E. , Michel , J. , Moreau , S. , Yamada , H. , Gaidamarov , S. A. , Crouch , R. J. , Toulmé , J. J. and Cazenave , C. 2003 . Selective inhibitory DNA aptamers of the human RNase H1 . Nucleic Acids Res. , 31 : 5776 – 5788 .
   PubMed Web of Science ®Google Scholar
• Chinnapen , D. J.F. and Sen , D. 2002 . Hemin-stimulated docking of cytochrome c to a hemin-DNA aptamer complex . Biochemistry , 41 : 5202 – 5212 .
   PubMed Web of Science ®Google Scholar
• Harada , Y. 2004 . Studies on biomolecules using single molecule imaging and manipulation techniques . Science and Technology of Advanced Materials , 5 : 709 – 713 .
   Web of Science ®Google Scholar
• Smith , D. E. , Gemmen , G. J. , Millin , R. , Rickgauer , J. P. , Schweitzer , A. L. and Fuller , D. B. N. 2005 . Using optical tweezers to study protein-DNA interactions . Proc. SPIE , : 274 – 283 . SPIE-5930
   Google Scholar
• Ashkin , A. , Dziedzic , J. M. , Bjorkholm , J. E. and Chu , S. 1986 . Observation of a single-beam gradient force optical trap for dielectric particles . Opt. Lett. , 11 : 288 – 290 .
   PubMed Web of Science ®Google Scholar
• Malagnino , N. , Pesce , G. , Sasso , A. and Arimondo , E. 2002 . Measurements of trapping efficiency and stiffness in optical tweezers . Opt. Commun. , 214 : 15 – 24 .
   Web of Science ®Google Scholar
• Gittes , F. and Schmidt , C. F. 1998 . Methods in Cell Biology , vol. 55 , 129 New York : Academic Press .
   Google Scholar
• Mehta , A. P. , Rief , M. , Spudich , J. A. , Smith , D. A. and Simmons , R. M. 1999 . Single-molecule biomechanics with optical methods . Science , 283 : 1689 – 1695 .
   PubMed Web of Science ®Google Scholar
• Tanaka , H. , Ishijma , A. , Honda , K. and Yanagida , T. 1998 . Orientation dependence of displacements by a single one-headed myosin relative to the actin filament . Biophys. Journ. , 75 : 1886 – 1894 .
   PubMed Web of Science ®Google Scholar
• Zander , C. , Enderlein , J. and Keller , R. A. 2002 . Single Molecule Detection in Solution , New York : Wiley-VCH .
   Google Scholar
• Addas , K. M. , Schmidt , C. F. and Tang , J. X. 2004 . Microrheology of solutions of semiflexible biopolymer filaments using laser tweezers interferometry . Phys. Rev. E , 70 : 21503 – 21516 .
   Web of Science ®Google Scholar
• Pesce , G. , Sasso , A. and Fusco , S. 2005 . Viscosity measurements on micron-size scale using optical tweezers . Rev. Sci. Instr. , 76 : 1151051 – 1151155 .
   Web of Science ®Google Scholar
• Gittes , F. and Schmidt , C. F. 1998 . Interference model for back-focal-plane displacement detection in optical tweezers . Opt. Lett. , 23 : 7 – 9 .
   PubMed Web of Science ®Google Scholar