The Potential of Ecotoxicoproteomics in Environmental Monitoring: Biomarker Profiling in Mussel Plasma Using Proteinchip Array Technology

REFERENCES

• Aarab , N. , Minier , C. , Lemaire , S. , Unruh , E. , Hansen , P. D. , Larsen , B. K. , Andersen , O. K. and Narbonne , J. F. 2004 . Biochemical and histological responses in mussel (Mytilus edulis) exposed to North Sea oil and to a mixture of North Sea oil and alkylphenols . Marine Environ. Res. , 58 : 437 – 441 .
   PubMed Web of Science ®Google Scholar
• Aardema , M. J. and MacGregor , J. T. 2002 . Toxicology and genetic toxicology in the new era of “toxicogenomics”: Impact of “-omics” technologies . Mutat. Res. Fundam. Mol. Mech. Mutagen. , 499 : 13 – 25 . [CROSSREF]
   PubMed Web of Science ®Google Scholar
• Aas , E. , Baussant , T. , Balk , L. , Liewenborg , B. and Andersen , O. K. 2000 . PAH metabolites in bile, cytochrome P4501A and DNA adducts as environmental risk parameters for chronic oil exposure: A laboratory experiment with Atlantic cod. Aquat . Toxicol. , 51 : 241 – 258 .
   Web of Science ®Google Scholar
• Arukwe , A. , Thibaut , R. , Ingebrigtsen , K. , Celius , T. , Goksøyr , A. and Cravedi , J. P. 2000 . In vivo and in vitro metabolism and organ distribution of nonylphenol in Atlantic salmon (Salmo salar) . Aquat. Toxicol. , 49 : 289 – 304 . [PUBMED] [INFOTRIEVE] [CROSSREF]
   PubMed Web of Science ®Google Scholar
• Arukwe , A. , Kullman , S. W. and Hinton , D. E. 2001 . Differential biomarker gene and protein expressions in nonylphenol and estradiol-17 beta treated juvenile rainbow trout (Oncorhynchus mykiss) . Comp. Biochem. Physiol. C Toxicol. Pharmacol. , 129 : 1 – 10 . [PUBMED] [INFOTRIEVE] [CROSSREF]
   PubMed Web of Science ®Google Scholar
• Ashton , G. H. S. , McGrath , J. A. and South , A. P. 2002 . Strategies to identify disease genes . Drugs Today , 38 : 235 – 244 . [CROSSREF]
   PubMed Web of Science ®Google Scholar
• Baldwin , J. D. , Pillai , M. C. and Cherr , G. N. 1992 . Response of embryos of the sea-urchin Strongylocentrotus purpuratus to aqueous petroleum waste includes the expression of a high-molecular-weight glycoprotein . Mar. Biol. , 114 : 21 – 30 .
   Web of Science ®Google Scholar
• Baussant , T. , Sanni , S. , Skadsheim , A. , Jonsson , G. , Børseth , J. F. and Gaudebert , B. 2001 . Bioaccumulation of polycyclic aromatic compounds: 2. Modelling, bioaccumulation in marine organisms chronically exposed to dispersed oil . Environ. Toxicol. Chem. , 20 : 1185 – 1195 . [PUBMED] [INFOTRIEVE] [CROSSREF]
   PubMed Web of Science ®Google Scholar
• Botstein , D. and Risch , N. 2003 . Discovering genotypes underlying human phenotypes: Past successes for mendelian disease, future approaches for complex disease . Nat. Genet. , 33 : 228 – 237 . [PUBMED] [INFOTRIEVE] [CROSSREF]
   PubMed Web of Science ®Google Scholar
• Breiman , L. , Friedman , J. , Olshen , R. and Stone , C. 1984 . Classification and regression trees , Pacific Grove, CA : Wadsworth .
   Google Scholar
• Caputo , E. , Moharram , R. and Martin , B. M. 2003 . Methods for on-chip protein analysis . Anal. Biochem. , 321 : 116 – 124 . [PUBMED] [INFOTRIEVE] [CROSSREF]
   PubMed Web of Science ®Google Scholar
• Clish , C. B. , Davidov , E. , Oresic , M. , Plasterer , T. N. , Lavine , G. , Londo , T. , Meys , M. , Snell , P. , Stochaj , W. , Adourian , A. , Zhang , X. , Morel , N. , Neumann , E. , Verheij , E. , Vogels , J. T. W. E. , Havekes , L. M. , Afeyan , N. , Regnier , F. , Van Der Greef , J. and Naylor , S. 2004 . Integrative biological analysis of the APOE*3-Leiden transgenic mouse . OMICS- Integrative Biol. , 8 : 3 – 13 . [CROSSREF]
   PubMed Web of Science ®Google Scholar
• Conrads , T. P. , Fusaro , V. A. , Ross , S. , Johann , D. , Rajapakse , V. , Hitt , B. A. , Steinberg , S. M. , Kohn , E. C. , Fishman , D. A. , Whiteley , G. , Barrett , J. C. , Liotta , L. A. , Petricoin , E. F. and Veenstra , T. D. 2004 . High-resolution serum proteomic features for ovarian cancer detection . Endocrine-Related Cancer , 11 : 163 – 178 . [PUBMED] [INFOTRIEVE] [CROSSREF]
   PubMed Web of Science ®Google Scholar
• Cunningham , M. L. , Bogdanffy , M. S. , Zacharewski , T. R. and Hines , R. N. 2003 . Workshop overview: Use of genomic data in risk assessment . Toxicol. Sci. , 73 : 209 – 215 . [PUBMED] [INFOTRIEVE] [CROSSREF]
   PubMed Web of Science ®Google Scholar
• Den Besten , P. J. , Lemaire , P. , Livingstone , D. R. , Woodin , B. , Stegeman , J. J. , Herwig , H. J. and Seinen , W. 1993 . Time-course and dose-response of the apparent induction of the cytochrome-P450 monooxygenase system of pyloric ceca microsomes of the female sea star Asterias rubens L by benzo[a]pyrene and polychlorinated biphenyls . Aquat. Toxicol. , 26 : 23 – 39 . [CROSSREF]
   Web of Science ®Google Scholar
• Diamond , D. L. , Zhang , Y. N. , Gaiger , A. , Smithgall , M. , Vedvick , T. S. and Carter , D. 2003 . Use of ProteinChip (TM) array surface enhanced laser desorption/ionization time-of-flight mass spectrometry (SELDI-TOF MS) to identify thymosin beta-4, a differentially secreted protein from lymphoblastoid cell lines . Am. Soc. Mass Spectrom. , 14 : 760 – 765 . [CROSSREF]
   PubMed Web of Science ®Google Scholar
• Fung , E. T. and Enderwick , C. 2002 . ProteinChip (R) clinical proteomics: Computational challenges and solutions . Biotechniques , 34: ( suppl. S. )
   Google Scholar
• Galloway , T. S. , Brown , R. J. , Browne , M. A. , Dissanayake , A. , Lowe , D. , Jones , M. B. and Depledge , M. H. 2004a . A multibiomarker approach to environmental assessment . Environ. Sci. Technol. , 38 : 1723 – 1731 . [PUBMED] [INFOTRIEVE] [CROSSREF]
   PubMed Web of Science ®Google Scholar
• Galloway , T. S. , Brown , R. J. , Browne , M. A. , Dissanayake , A. , Lowe , D. , Jones , M. B. and Depledge , M. H. 2004b . Ecosystem management bioindicators: The ECOMAN project—A multi-biomarker approach to ecosystem management . Mar. Environ. Res. , 58 : 233 – 237 . [PUBMED] [INFOTRIEVE] [CROSSREF]
   PubMed Web of Science ®Google Scholar
• Gibb , H. J. , Checkoway , H. and Stayner , L. 2002 . Improving risk assessment: Priorities for epidemiologic research . Hum. Ecol. Risk Assess. , 8 : 1397 – 1404 . [CROSSREF]
   Web of Science ®Google Scholar
• Giesy , J. P. , Pierens , S. L. , Snyder , E. M. , Miles-Richardson , S. , Kramer , V. J. , Snyder , S. A. , Nichols , K. M. and Villeneuve , D. A. 2000 . Effects of 4-nonylphenol on fecundity and biomarkers of estrogenicity in fathead minnows (Pimephales promelas) . Environ. Toxicol. Chem. , 19 : 1368 – 1377 . [CROSSREF]
   Web of Science ®Google Scholar
• Gimeno , S. , Komen , H. , Gerritsen , A. G. M. and Bowmer , T. 1998 . Feminisation of young males of the common carp, Cyprinus carpio, exposed to 4-tert-pentylphenol during genderual differentiation . Aquat. Toxicol. , 43 : 77 – 92 . [CROSSREF]
   Web of Science ®Google Scholar
• Harvey , J. S. , Lyons , B. P. , Page , T. S. , Stewart , C. J. and Parry , M. 1999 . An assessment of the genotoxic impact of the Sea Empress oil spill by the measurement of DNA adduct levels in selected invertebrate and vertebrate species . Mutat. Res. , 441 : 103 – 114 . [PUBMED] [INFOTRIEVE]
   PubMed Web of Science ®Google Scholar
• Hasselberg , L. , Meier , S. , Svardal , A. , Hegelund , T. and Celander , M. C. 2004 . Effects of alkylphenols on CYP1A and CYP3A expression in first spawning Atlantic cod (Gadus morhua) . Aquat. Toxicol. , 67 : 303 – 313 . [PUBMED] [INFOTRIEVE] [CROSSREF]
   PubMed Web of Science ®Google Scholar
• Högstrand , C. , Balesaria , S. and Glover , C. N. 2002 . Application of genomics and proteomics for study of the integrated response to zinc exposure in a non-model fish species, the rainbow trout . Comp. Biochem. Physiol. B Biochem. Mol. Biol. , 133 : 523 – 535 . [CROSSREF]
   PubMed Web of Science ®Google Scholar
• Issaq , H. J. , Veenstra , T. D. , Conrads , T. P. and Felschow , D. 2003 . The SELDI-TOF MS approach to proteomics: Protein profiling and biomarker identification . Biochem. Biophys. Res. Commun. , 292 : 587 – 592 . [CROSSREF]
   Web of Science ®Google Scholar
• Jonsson , G. , Bechmann , R. K. , Bamber , S. D. and Baussant , T. 2004 . Bioconcentration, biotransformation, and elimination of polycyclic aromatic hydrocarbons in sheepshead minnows (Cyprinodon variegatus) exposed to contaminated seawater . Environ. Toxicol. Chem. , 23 : 1538 – 1548 . [PUBMED] [INFOTRIEVE] [CROSSREF]
   PubMed Web of Science ®Google Scholar
• Knigge , T. , Monsinjon , T. and Andersen , O. K. 2004 . Surface-enhanced laser desorption/ionization-time of flight-mass spectrometry approach to biomarker discovery in blue mussels (Mytilus edulis) exposed to polyaromatic hydrocarbons and heavy metals under field conditions . Proteomics , 4 : 2722 – 2727 . [PUBMED] [INFOTRIEVE] [CROSSREF]
   PubMed Web of Science ®Google Scholar
• Krause , P. R. 1994 . Effects of an oil production effluent on gametogenesis and gamete performance in the purple sea-urchin (Stronglyocentrotus purpuratus stimpson) . Environ. Toxicol. Chem. , 13 : 1153 – 1161 .
   Web of Science ®Google Scholar
• Lam , P. K. S. and Gray , J. S. 2003 . The use of biomarkers in environmental monitoring programmes . Mar. Pollut. Bull. , 46 : 182 – 186 . [PUBMED] [INFOTRIEVE] [CROSSREF]
   PubMed Web of Science ®Google Scholar
• Lau , A. T. Y. , He , Q. Y. and Chiu , J. F. 2003 . Proteomic technology and its biomedical applications . Acta Biochim. Biophys. Sin. , 35 : 965 – 975 . [PUBMED] [INFOTRIEVE]
   Google Scholar
• Li , J. N. , Zhang , Z. , Rosenzweig , J. , Wang , Y. Y. and Chan , D. W. 2002 . Proteomics and bioinformatics approaches for identification of serum biomarkers to detect breast cancer . Clin. Chem. , 48 : 1296 – 1304 . [PUBMED] [INFOTRIEVE]
   PubMed Web of Science ®Google Scholar
• MacGregor , J. T. 2003 . The future of regulatory toxicology: Impact of the biotechnology revolution . Toxicol. Sci. , 75 : 236 – 248 . [PUBMED] [INFOTRIEVE] [CROSSREF]
   PubMed Web of Science ®Google Scholar
• Merchant , M. and Weinberger , S. R. 2000 . Recent advancements in surface-enhanced laser desorption/ionization–time of flight–mass spectrometry . Electrophoresis , 21 : 1164 – 1177 . [PUBMED] [INFOTRIEVE] [CROSSREF]
   PubMed Web of Science ®Google Scholar
• Moore , M. N. , Depledge , M. H. , Readman , J. W. and Leonard , D. R. P. 2004 . An integrated biomarker-based strategy for ecotoxicological evaluation of risk in environmental management . Mutat. Res. Fundam. Mol. Mech. Mutagen. , 552 : 247 – 268 . [CROSSREF]
   PubMed Web of Science ®Google Scholar
• Morgan , K. T. , Ni , H. , Brown , H. R. , Yoon , L. , Qualls , C. W. , Crosby , L. M. , Reynolds , R. , Gaskill , B. , Anderson , S. P. , Kepler , T. B. , Brainard , T. , Liv , N. , Easton , M. , Merrill , C. , Creech , D. , Sprenger , D. , Conner , G. , Johnson , P. R. , Fox , T. , Sartor , M. , Richard , E. , Kuruvilla , S. , Casey , W. and Benavides , G. 2002 . Application of cDNA microarray technology to in vitro toxicology and the selection of genes for a real-time RT-PCR-based screen for oxidative stress in Hep-G2 cells . Toxicol. Pathol. , 30 : 435 – 451 . [PUBMED] [INFOTRIEVE]
   PubMed Web of Science ®Google Scholar
• Narvia , M. and Rantamaki , P. 1997 . Aminotransferases in the bivalve mollusc Mytilus edulis L and short term effects of crude oil in brackish water . Biomarkers , 2 : 253 – 258 . [CROSSREF]
   PubMed Web of Science ®Google Scholar
• Nicholson , J. K. , Connelly , J. , Lindon , J. C. and Holmes , E. 2002 . Metabonomics: a platform for studying drug toxicity and gene function . Nat. Rev. Drug Discov. , 1 : 153 – 161 . [PUBMED] [INFOTRIEVE] [CROSSREF]
   PubMed Web of Science ®Google Scholar
• Nimrod , A. C. and Benson , W. H. 1996 . Environmental estrogenic effects of alkylphenol ethoxylates . Crit. Rev. Toxicol. , 26 : 335 – 364 . [PUBMED] [INFOTRIEVE]
   PubMed Web of Science ®Google Scholar
• Nuwaysir , E. F. , Bittner , M. , Trent , J. , Barrett , J. C. and Afshari , C. A. 1999 . Microarrays and toxicology: The advent of toxicogenomics . Mol. Carcinogen. , 24 : 153 – 159 . [CROSSREF]
   PubMed Web of Science ®Google Scholar
• Oberdörster , E. , Brouwer , M. , Hoexum-Brouwer , T. , Manning , S. and McLachlan , J. A. 2000 . Long-term pyrene exposure of grass shrimp, Palaemonetes pugio, affects molting and reproduction of exposed males and offspring of exposed females . Environ. Health Perspect. , 108 : 641 – 646 .
   PubMed Web of Science ®Google Scholar
• Osenberg , C. W. , Schmitt , R. J. , Holbrook , S. J. and Canestro , D. 1992 . “ Spatial scale of ecological effects associated with an open coast discharge of produced water ” . In Produced water: Technological/environmental issues and solutions , Edited by: Ray , J. P. and Engelhardt , F. R. 387 – 402 . New York : Plenum Press .
   Google Scholar
• Peakall , D. B. , ed. 1992 . Animal biomarkers as pollution indicators. Ecotoxicology Ser. 1. , Chapman & Hall .
   Google Scholar
• Petricoin , E. F. and Liotta , L. A. 2004a . SELDI-TOF-based serum proteomic pattern diagnostics for early detection of cancer . Curr. Opin. Biotechnol. , 15 : 24 – 30 . [PUBMED] [INFOTRIEVE] [CROSSREF]
   PubMed Web of Science ®Google Scholar
• Petricoin , E. F. and Liotta , L. A. 2004b . Proteomic approaches in cancer risk and response assessment . Trends Mol. Med. , 10 : 59 – 64 . [PUBMED] [INFOTRIEVE] [CROSSREF]
   PubMed Web of Science ®Google Scholar
• Petricoin , E. F. , Ardekani , A. M. , Hitt , B. A. , Levine , P. J. , Fusaro , V. A. , Steinberg , S. M. , Mills , G. B. , Simone , C. , Fishman , D. A. , Kohn , E. C. and Liotta , L. A. 2002 . Use of proteomic patterns in serum to identify ovarian cancer . Lancet , 359 : 572 – 577 . [PUBMED] [INFOTRIEVE] [CROSSREF]
   PubMed Web of Science ®Google Scholar
• Rodriguez-Ortega , M. J. , Grøsvik , B. E. , Rodriguez-Ariza , A. , Goksøyr , A. and Lopez-Barea , J. 2003 . Changes in protein expression profiles in bivalve molluscs (Chamaelea gallina) exposed to four model environmental pollutants . Proteomics , 3 : 1535 – 1543 . [PUBMED] [INFOTRIEVE] [CROSSREF]
   PubMed Web of Science ®Google Scholar
• Rogers , M. A. , Clarke , P. , Noble , J. , Munro , N. P. , Paul , A. , Selby , P. J. and Banks , R. E. 2003 . Proteomic profiling of urinary proteins in renal cancer by surface enhanced laser desorption ionization and neural-network analysis: Identification of key issues affecting potential clinical utility . Cancer Res , 63 : 6971 – 6983 . [PUBMED] [INFOTRIEVE]
   PubMed Web of Science ®Google Scholar
• Sanchez , J. C. , Guillaume , E. , Lescuyer , P. , Allard , L. , Carrette , O. , Scherl , A. , Burgess , J. , Corthals , G. L. , Burkhard , P. R. and Hochstrasser , D. F. 2004 . Cystatin C as a potential cerebrospinal fluid marker for the diagnosis of Creutzfeldt–Jakob disease . Proteomics , 4 : 2229 – 2233 . [PUBMED] [INFOTRIEVE] [CROSSREF]
   PubMed Web of Science ®Google Scholar
• Sanni , S. , Øysæd , K. B. , Høivangli , V. and Gaudebert , B. 1998 . A continuous flow system (CPS) for chronic exposure of aquatic organisms . Mar. Environ. Res. , 46 : 97 – 101 . [CROSSREF]
   Web of Science ®Google Scholar
• Schlenk , D. 1999 . Necessity of defining biomarkers for use in ecological risk assessments . Mar. Pollut. Bull. , 39 : 48 – 53 . [CROSSREF]
   Web of Science ®Google Scholar
• Shepard , J. L. and Bradley , B. P. 2000 . Protein expression signatures and lysosomal stability in Mytilus edulis exposed to graded copper concentrations . Mar. Environ. Res. , 50 : 457 – 463 . [PUBMED] [INFOTRIEVE] [CROSSREF]
   PubMed Web of Science ®Google Scholar
• Shiu , W. Y. , Ma , K. C. , Varhanickova , D. and Mackay , D. 1994 . Chlorophenols and alkylphenols—A review and correlation of environmentally relevant properties and fate in an evaluative environment . Chemosphere , 29 : 1155 – 1224 . [CROSSREF]
   Web of Science ®Google Scholar
• Shrader , E. A. , Henry , T. R. , Greeley , M. S. and Bradley , B. P. 2003 . Proteomics in zebrafish exposed to endocrine disrupting chemicals . Ecotoxicology , 12 : 485 – 488 . [PUBMED] [INFOTRIEVE]
   PubMed Web of Science ®Google Scholar
• Snape , J. R. , Maund , S. J. , Pickford , D. B. and Hutchinson , T. H. 2004 . Ecotoxicogenomics: The challenge of integrating genomics into aquatic and terrestrial ecotoxicology . Aquat. Toxicol. , 67 : 143 – 154 . [PUBMED] [INFOTRIEVE]
   PubMed Web of Science ®Google Scholar
• Sundt , R. and Baussant , T. Uptake, tissue distribution and elimination of C4–C7 alkylated phenols in cod. Dietary vs. waterborne exposure . 2003 . Stavanger, Norway, RF-Akvamiljø/RF-Akvamiljø Report AM 2003/001
   Google Scholar
• Taban , I. C. , Bechmann , R. K. , Torgrimsen , S. , Baussant , T. and Sanni , S. 2004 . Detection of DNA damage in mussels and sea urchins exposed to crude oil using comet assay . Mar. Environ. Res. , 58 : 701 – 705 . [PUBMED] [INFOTRIEVE] [CROSSREF]
   PubMed Web of Science ®Google Scholar
• Tang , N. , Tornatore , P. and Weinberger , S. R. 2004 . Current developments in SELDI affinity technology . Mass Spectrom. Rev. , 23 : 34 – 44 . [PUBMED] [INFOTRIEVE] [CROSSREF]
   PubMed Web of Science ®Google Scholar
• Thulasiraman , V. , McCutchen-Maloney , S. L. , Motin , V. L. and Garcia , E. 2001 . Detection and identification of virulence factors in Yersinia pestis using SELDI ProteinChip (R) system . Biotechniques , 30 : 428 – 432 . [PUBMED] [INFOTRIEVE]
   PubMed Web of Science ®Google Scholar
• Utvik , T. I. R. 1999 . Chemical characterization of produced water from four offshore oil production platforms in the North Sea . Chemosphere , 39 : 2593 – 2606 . [CROSSREF]
   Web of Science ®Google Scholar
• Van der Greef , J. , Stroobant , P. and Van der Heijden , R. 2004 . The role of analytical sciences in medical systems biology . Curr. Opin. Chem. Biol. , 8 : 559 – 565 . [PUBMED] [INFOTRIEVE] [CROSSREF]
   PubMed Web of Science ®Google Scholar
• White , R. , Jobling , S. , Hoare , S. A. , Sumpter , J. P. and Parker , M. G. 1994 . Environmentally persistent alkylphenolic compounds are estrogenic . Endocrinology , 135 : 175 – 182 . [PUBMED] [INFOTRIEVE] [CROSSREF]
   PubMed Web of Science ®Google Scholar
• Zachariassen , K. E. , Aunaas , T. , Børseth , J. F. , Einarson , S. , Nordtug , T. , Olsen , A. and Skjervo , G. 1991 . Physiological parameters in ecotoxicology . Comp. Biochem. Physiol. C Toxicol. Endocrinol. , 100 : 77 – 79 .
   PubMed Web of Science ®Google Scholar
• Zhang , L. Q. , Yu , W. J. , He , T. , Yu , J. , Caffrey , R. E. , Dalmasso , E. A. , Fu , S. Y. , Pham , T , Mei , J. F. , Ho , J. J. , Zhang , W. Y. , Lopez , P. and Ho , D. D. 2002 . Contribution of human alpha-defensin 1, 2, and 3 to the anti-HIV-1 activity of CD8 antiviral factor . Science , 298 : 995 – 1000 . [PUBMED] [INFOTRIEVE] [CROSSREF]
   PubMed Web of Science ®Google Scholar