Possible Editing of Alu Transcripts in Blood Cells of Sporadic Creutzfeldt–Jakob Disease (sCJD)

REFERENCES

• Bernard , A. , Ferhat , L. , Dessi , F. , Charton , G. , Represa , A. , Ben-Ari , Y. and Khrestchatisky , M. 2009 . Q/R editing of the rat GluR5 and GluR6 kainate receptors in vivo and in vitro: Evidence for independent developmental, pathological and cellular regulation . Eur. J. Neurosci. , 11 : 604 – 616 .
   Google Scholar
• Chiu , Y. L. , Witkowska , H. E. , Hall , S. C. , Santiago , M. , Soros , V. B. , Esnault , C. , Heidmann , T. and Greene , W. C. 2006 . High-molecular-mass APOBEC3G complexes restrict Alu retrotransposition . Proc. Natl. Acad. Sci. USA , 103 : 15588 – 15593 .
   PubMed Web of Science ®Google Scholar
• DeCerbo , J. and Carmichael , G. C. 2005 . SINEs point to abundant editing in the human genome . Genome Biol. , 6 : 216
   PubMed Web of Science ®Google Scholar
• Ebhardt , H. A. , Tsang , H. H. , Dai , D. C. , Liu , Y. , Bostan , B. and Fahlmann , R. P. 2009 . Meta-analysis of small RNA-sequencing errors reveals ubiquitous post-transcriptional RNA modifications . Nucleic Acids Res. , 2 : 1 – 10 .
   Google Scholar
• Ensterö , M. , Akerborg , O. , Lundin , D. , Wang , B. , Furey , T.S. , Ohman , M. and Lagergren , J. 2010 . A computational screen for site selective A-to-I editing detects novel sites in neuron specific Hu proteins . BMC Bioinformatics , 11 : 6
   Google Scholar
• Esnault , C. , Millet , J. , Schwartz , O. and Heidmann , T. 2006 . Dual inhibitory effects of APOBEC family proteins on retrotransposition of mammalian endogenous retroviruses . Nucleic Acids Res. , 34 : 1522 – 1531 .
   PubMed Web of Science ®Google Scholar
• Goodier , J. L. and Kazazian , H. H. 2008 . Retrotransposons revisited: the restraint and rehabilitation of parasites . Cell , 135 : 23 – 35 .
   PubMed Web of Science ®Google Scholar
• Kiesel , P. T. , Giobson , J. , Ciesielczyk , B. , Bodemer , M. , Kaup , F. J. , Bodemer , W. , Zischler , H. and Zerr , I. 2010 . Transcription of Alu DNA elements in blood cells of sporadic Creutzfeldt-Jakob disease (sCJD) . Prion , 4 epub ahead of print
   PubMed Web of Science ®Google Scholar
• Kim , D. D. , Kim , T. T. , Walsh , T. , Kobayashi , Y. , Matise , T. C. , Buyske , S. and Gabriel , A. 2004 . Widespread RNA editing of embedded Alu elements in the human transcriptome . Genome Res. , 14 : 1719 – 1725 .
   PubMed Web of Science ®Google Scholar
• Kuhn , R. M. , Karolchik , D. , Zweig , A. S. , Wang , T. , Smith , K. E. , Rosenbloom , K. R. , Rhead , B. , Raney , B. J. , Pohl , A. , Pheasant , M. , Meyer , L. , Hsu , F. , Hinrichs , A. S. , Harte , R. A. , Giardine , B. , Fujita , P. , Diekhans , M. , Dreszer , T. , Clawson , H. , Barber , G. P. , Haussler , D. and Kent , W. J. 2009 . The UCSC genome browser database: Update 2009 . Nucleic Acids Res. , 37 : D755 – D761 . (Database issue)
   PubMed Web of Science ®Google Scholar
• Kwak , S. , Nishimoto , Y. and Yamashita , T. 2008 . Newly identified ADAR-mediated A-to-I editing for ALS research . RNA Biol. , 5 : 193 – 197 .
   PubMed Web of Science ®Google Scholar
• Larkin , M. A. , Blackshields , G. , Brown , N. P. , Chenna , R. , McGettigan , P. A. , McWilliam , H. , Valentin , F. , Wallace , I. M. , Wilm , A. , Lopez , R. , Thompson , J. D. , Gibson , T. J. and Higgins , D. G. 2007 . Clustal W and Clustal X version 2.0 . Bioinformatics , 23 : 2947 – 2948 .
   PubMed Web of Science ®Google Scholar
• Malim , M. H. 2006 . Natural resistance to HIV infection: The Vif-APOBEC interaction . C. R. Biol. , 329 : 871 – 875 .
   PubMed Web of Science ®Google Scholar
• Mattick , J. S. and Mehler , M. F. 2008 . RNA editing, DNA recoding and the evolution of human cognition . Trends Neurosci. , 31 : 227 – 233 .
   PubMed Web of Science ®Google Scholar
• Panning , B. and Smiley , J. R. 1995 . Activation of expression of multiple subfamilies of human Alu elements by adenovirus type 5 and herpes simplex virus type 1 . J. Mol. Biol. , 248 : 513 – 524 .
   PubMed Web of Science ®Google Scholar
• Paz , N. , Levanon , E. Y. , Amariglio , N. , Heimberger , A. B. , Ram , Z. , Constantini , S. , Barbash , Z. S. , Adamsky , K. , Safran , M. , Hirschberg , A. , Krupsky , M. , Ben-Dov , I. , Cazacu , S. , Mikkelsen , T. , Brodie , C. , Eisenberg , E. and Rechavi , G. 2007 . Altered adenosine-to-inosine RNA editing in human cancer . Genome Res. , 17 : 1586 – 1595 .
   PubMed Web of Science ®Google Scholar
• Rubin , C. M. , Kimura , R. H. and Schmid , C. W. 2002 . Selective stimulation of translational expression by Alu RNA . Nucleic Acids Res , 30 : 3253 – 3261 .
   PubMed Web of Science ®Google Scholar
• Sayers , E. W. , Barrett , T. , Benson , D. A. , Bryant , S. H. , Canese , K. , Chetvernin , V. , Church , D. M. , DiCuccio , M. , Edgar , R. , Federhen , S. , Feolo , M. , Geer , L. Y. , Helmberg , W. , Kapustin , Y. , Landsman , D. , Lipman , D. J. , Madden , T. L. , Maglott , D. R. , Miller , V. , Mizrachi , I. , Ostell , J. , Pruitt , K. D. , Schuler , G. D. , Sequeira , E. , Sherry , S. T. , Shumway , M. , Sirotkin , K. , Souvorov , A. , Starchenko , G. , Tatusova , T. A. , Wagner , L. , Yaschenko , E. and Ye , J. 2009 . Database resources of the National Center for Biotechnology . Nucleic Acids Res , 37 : D5 – D15 . (Database issue)
   PubMed Web of Science ®Google Scholar
• Stopak , K. S. , Chiu , Y. L. , Kropp , J. , Grant , R. M. and Greene , W. 2007 . Distinct pattern of cytokine regulation of APOBEC3G expression and activity in primary lymphocytes, macrophages, and dendritic cells . J. Biol. Chem , 282 : 3539 – 3546 .
   PubMed Web of Science ®Google Scholar
• Sun , F. J. , Fleurdépine , S. , Bouquet-Antonelli , C. , Caetano-Anollés , G. and Deragon , J.M. 2007 . Common evolutionary trends for SINE RNA structures . Trends Genet. , 23 : 26 – 33 .
   PubMed Web of Science ®Google Scholar
• Zilberman , D. E. , Safran , M. , Paz , N. , Amariglio , N. , Simon , A. , Fridman , E. , Kleinmann , N. , Ramon , J. and Rechavi , G. 2009 . Does RNA editing play a role in the development of urinary bladder cancer? . Urol. Oncol. , 29 Jan e-pub ahead of print
   PubMed Web of Science ®Google Scholar