Toxicity evaluation and microbiota response of the lined sole Achirus lineatus (Chordata: Achiridae) exposed to the light petroleum water-accommodated fraction (WAF)

References

• Aas, E., J. Beyer, and A. Goksøryr. 1998. PAH in fish bile detected by fixed wavelength fluorescence. Mar. Environ. Res. 46:225–28. doi:10.1016/S0141-1136(97)00034-2.
   Web of Science ®Google Scholar
• Aas, E., T. Baussant, L. Balk, B. Liewenborg, and O. K. Andersen. 2000. PAH metabolites in bile, cytochrome P4501A and DNA adducts as environmental risk parameters for chronic oil exposure: A laboratory experiment with Atlantic cod. Aquat. Toxicol. 51:241–58. doi:10.1016/S0166-445X(00)00108-9.
   PubMed Web of Science ®Google Scholar
• Ackleh, A., G. Ioup, J. Ioup, B. Ma, J. Newcomb, N. Pal, N. Sidorovskaia, and C. Tiemann. 2012. Assessing the Deepwater Horizon oil spill impact on marine mammal population through acoustics: Endangered sperm whales. J. Acoust. Soc. Am. 131:2306–14. doi:10.1121/1.3682042.
   PubMed Web of Science ®Google Scholar
• Adamovsky, O., A. N. Buerger, A. M. Wormington, N. Ector, R. J. Griffitt, J. H. Bisesi, and C. J. Martyniuk. 2018. The gut microbiome and aquatic toxicology: An emerging concept for environmental health. Environ. Toxicol. Chem. 37:2758–75. doi:10.1002/etc.4249.
   PubMed Web of Science ®Google Scholar
• Adeyemo, O. K., K. J. Kroll, and N. D. Denslow. 2015. Developmental abnormalities and differential expression of genes induced in oil and dispersant exposed Menidia beryllina embryos. Aquat. Toxicol. 168:60–71. doi:10.1016/j.aquatox.2015.09.012.
   PubMed Web of Science ®Google Scholar
• Agamy, E. 2012. Histopathological changes in the livers of rabbit fish (Siganus canaliculatus) following exposure to crude oil and dispersed oil. Toxicol. Pathol. 40:1128–40. doi:10.1177/0192623312448936.
   PubMed Web of Science ®Google Scholar
• Agius, C., and R. J. Roberts. 2003. Melanomacrophage centres and their role in fish pathology. J. Fish Dis. 26:499–509. doi:10.1046/j.1365-2761.2003.00485.x.
   PubMed Web of Science ®Google Scholar
• Ali, A. O., C. Hohn, P. J. Allen, L. Ford, M. B. Dail, S. Pruett, and L. Petrie-Hanson. 2014. The effects of oil exposure on peripheral blood leukocytes and splenic melanomacrophage centers of Gulf of Mexico fishes. Mar. Pollut. Bull. 79:87–93. doi:10.1016/j.marpolbul.2013.12.036.
   PubMed Web of Science ®Google Scholar
• Allan, S. E., B. W. Smith, and K. A. Anderson. 2012. Impact of the Deepwater Horizon oil spill on bioavailable polycyclic aromatic hydrocarbons in Gulf of Mexico coastal waters. Environ. Sci. Technol. 46:2033–39. doi:10.1021/es202942q.
   PubMed Web of Science ®Google Scholar
• Al-Mutairi, N., A. Bufarsan, and F. Al-Rukaibi. 2008. Ecorisk evaluation and treatability potential of soils contaminated with petroleum hydrocarbon-based fuels. Chemosphere 74:142–48. doi:10.1016/j.chemosphere.2008.08.020.
   PubMed Web of Science ®Google Scholar
• Arellano, J. M., V. Storch, and C. Sarasquete. 1999. Histological changes and copper accumulation in liver and gills of the Senegales sole, Solea senegalensis. Ecotoxicol. Environ. Saf. 44:62–72. doi:10.1006/eesa.1999.1801.
   PubMed Web of Science ®Google Scholar
• Ariese, F., S. J. Kok, M. Verkaik, C. Gooijer, N. H. Velthorst, and J. W. Hofstraat. 1993. Synchronous fluorescence spectrometry of fish bile: A rapid screening method for the biomonitoring of PAH exposure. Aquat. Toxicol. 26:273–86. doi:10.1016/0166-445X(93)90034-X.
   Web of Science ®Google Scholar
• Baali, A., U. Kammann, R. Hanel, I. El Qoraychy, and A. Yahyaoui. 2016. Bile metabolites of polycyclic aromatic hydrocarbons (PAHs) in three species of fish from Morocco. Environ. Sci. Eur. 28:25. doi:10.1186/s12302-016-0093-6.
   PubMed Web of Science ®Google Scholar
• Bagi, A., E. S. Riiser, H. S. Molland, B. Star, T. Haverkamp, M. O. Sydnes, and D. M. Pampanin. 2018. Gastrointestinal microbial community changes in Atlantic cod (Gadus morhua) exposed to crude oil. BMC Microbiol. 18:25. doi:10.1186/s12866-018-1171-2.
   PubMed Web of Science ®Google Scholar
• Barron, M. G., and L. Ka’aihue. 2003. Critical evaluation of CROSERF test methods for oil dispersant toxicity testing under subarctic conditions. Mar. Pollut. Bull. 46:1191–99. doi:10.1016/S0025-326X(03)00125-5.
   PubMed Web of Science ®Google Scholar
• Bellas, J., L. Saco-Álvarez, Ó. Nieto, J. M. Bayona, J. Albaigés, and R. Beiras. 2013. Evaluation of artificially-weathered standard fuel oil toxicity by marine invertebrate embryogenesis bioassays. Chemosphere 90:1103–08. doi:10.1016/j.chemosphere.2012.09.015.
   PubMed Web of Science ®Google Scholar
• Blahová, J., L. Plhalová, M. Hostovský, L. Divišová, R. Dobšíková, I. Mikulíková, S. Štěpánová, and Z. Svobodová. 2013. Oxidative stress responses in zebrafish Danio rerio after subchronic exposure to atrazine. Food Chem. Toxicol. 61:82–85. doi:10.1016/j.fct.2013.02.041.
   PubMed Web of Science ®Google Scholar
• Blüthgen, N., S. Zucchi, and K. Fent. 2012. Effects of the UV filter benzophenone-3 (oxybenzone) at low concentrations in zebrafish (Danio rerio). Toxicol. Appl. Pharmacol. 263:184–94. doi:10.1016/j.taap.2012.06.008.
   PubMed Web of Science ®Google Scholar
• Bolyen, E., J. R. Rideout, M. R. Dillon, N. A. Bokulich, C. C. Abnet, G. A. Al-Ghalith, Y. Bai, and J. G. Caporaso. 2019. Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2. Nat. Biotechnol. 37:852–57. doi:10.1038/s41587-019-0209-9.
   PubMed Web of Science ®Google Scholar
• Bonucci Moreira, C., R. Vieira Rodrigues, L. A. Romano, E. Pereira Gusmão, B. Hartwig Seyffert, L. A. Sampaio, and K. C. Miranda-Filho. 2014. Genotoxicity and histological alterations in grey mullet Mugilliza exposed to petroleum water-soluble fraction (PWSF). Environ. Sci. Pollut. Res. 21:5565–74. doi:10.1007/s11356-013-2440-0.
   PubMed Web of Science ®Google Scholar
• Borrelli, L., S. Aceto, C. Agnisola, S. De Paolo, L. Dipineto, R. M. Stilling, T. G. Dinan, J. F. Cryan, L. F. Menna, and A. Fioretti. 2016. Probiotic modulation of the microbiota-gut-brain axis and behaviour in zebrafish. Sci Rep 6:1–9. doi:10.1038/srep30046.
   PubMed Web of Science ®Google Scholar
• Brand, D., R. Fink, W. Bengeyfield, I. Birtwell, and C. Mcallister. 2001. Salt water-acclimated pink salmon fry (Oncorrhynchus gorbuscha) develop stress-related visceral lesions after 10-day exposure to sublethal concentrations of the water-soluble fraction of North Slope crude oil. Toxicol. Pathol. 29:574–84. doi:10.1080/019262301317226384.
   PubMed Web of Science ®Google Scholar
• Brewton, R. A., R. Fulford, and R. J. Griffitt. 2013. Gene expression and growth as indicators of effects of the BP Deepwater Horizon oil spill on spotted seatrout (Cynoscion nebulosus). J. Toxicol. Environ. Health A 76:1198–209. doi:10.1080/15287394.2013.848394.
   PubMed Web of Science ®Google Scholar
• Brown-Peterson, N. J., M. Krasnec, R. Takeshita, C. N. Ryan, K. J. Griffitt, C. Lay, G. D. Mayer, K. M. Bayha, W. E. Hawkins, I. Lipton. 2015. A multiple endpoint analysis of the effects of chronic exposure to sediment contaminated with Deepwater Horizon oil on juvenile Southern flounder and their associated microbiomes. Aquat. Toxicol. 165:197–209. http://linkinghub.elsevier.com/retrieve/pii/S0166445X15001733.
   PubMed Web of Science ®Google Scholar
• Brown-Peterson, N. J., M. O. Krasnec, C. R. Lay, J. M. Morris, and R. J. Griffitt. 2017. Responses of juvenile Southern flounder exposed to Deepwater Horizon oil-contaminated sediments. Environ. Toxicol. Chem. 36:1067–76. doi:10.1002/etc.3629.
   PubMed Web of Science ®Google Scholar
• Callahan, B. J., P. J. McMurdie, M. J. Rosen, A. W. Han, A. J. A. Johnson, and S. P. Holmes. 2016. DADA2: High-resolution sample inference from Illumina amplicon data. Nat. Methods 13:581–83. doi:10.1038/nmeth.3869.
   PubMed Web of Science ®Google Scholar
• Callahan, B. J., P. J. McMurdie, and S. P. Holmes. 2017. Exact sequence variants should replace operational taxonomic units in marker-gene data analysis. Isme J. 11:2639. doi:10.1038/ismej.2017.119.
   PubMed Web of Science ®Google Scholar
• Camargo, M. M. P., and C. B. R. Martinez. 2007. Histopathology of gills, kidney and liver of a neotropical fish caged in an urban stream. Neotrop. Ichthyol. 5:327–36. doi:10.1590/S1679-62252007000300013.
   Web of Science ®Google Scholar
• Chao, A. 1987. Estimating the population size for capture-recapture data with unequal catchability. Biometrics 43:783–91. doi:10.2307/2531532.
   PubMed Web of Science ®Google Scholar
• Cornejo-Granados, F., A. A. Lopez-Zavala, L. Gallardo-Becerra, A. Mendoza-Vargas, F. Sánchez, R. Vichido, L. G. Brieba, M. T. Viana, R. R. Sotelo-Mundo, and A. Ochoa-Leyva. 2017. Microbiome of Pacific whiteleg shrimp reveals differential bacterial community composition between wild, aquacultured and AHPND/EMS outbreak conditions. Sci. Rep. 7:1–15. doi:10.1038/s41598-017-11805-w.
   PubMed Web of Science ®Google Scholar
• Corrales, J., X. Fang, C. Thornton, W. Mei, W. B. Barbazuk, M. Duke, B. E. Scheffler, and K. L. Willett. 2014. Effects on specific promoter DNA methylation in zebrafish embryos and larvae following benzo[a]pyrene exposure. Comp. Biochem. Physiol. C 163:37–46.
   PubMed Web of Science ®Google Scholar
• Crone, T. J., and M. Tolstoy. 2010. Magnitude of the 2010 Gulf of Mexico oil leak. Science 330:634. doi:10.1126/science.1195840.
   PubMed Web of Science ®Google Scholar
• Das, N., and P. Chandran. 2011. Microbial degradation of petroleum hydrocarbon contaminants: An overview. Biotechnol. Res. Int. 2011:941810. doi:10.4061/2011/941810.
   PubMedGoogle Scholar
• de Soysa, T. Y., A. Ulrich, T. Friedrich, D. Pite, S. L. Compton, D. Ok, R. L. Bernardos, G. B. Downes, S. Hsieh, R. Stein, et al. 2012. Macondo crude oil from the Deepwater Horizon oil spill disrupts specific developmental processes during zebrafish embryogenesis. BMC Biol. 10:40. doi:10.1186/1741-7007-10-40.
   PubMed Web of Science ®Google Scholar
• Dubansky, B., A. Whitehead, J. T. Miller, C. D. Rice, and F. Galvez. 2013. Multitissue molecular, genomic, and developmental effects of the Deepwater Horizon oil spill on resident Gulf killifish (Fundulus grandis). Environ. Sci. Technol. 47:5074–82. doi:10.1021/es400458p.
   PubMed Web of Science ®Google Scholar
• García-Tavera, J. L., D. Valdés-Lozano, I. Poblete-Naredo, A. Albores-Medina, and O. Zapata-Pérez. 2013. Bile benzo[a]pyrene concentration and hepatic CYP1A induction in hypoxic adult tilapia (Oreochromis niloticus). Chemosphere 92:16–23. doi:10.1016/j.chemosphere.2013.03.034.
   PubMed Web of Science ®Google Scholar
• Giari, L., M. Manera, E. Simoni, and B. S. Dezfuli. 2007. Cellular alterations in different organs of European sea bass Dicentrachus labrax (L.) exposed to cadmium. Chemosphere 67:1171–81. doi:10.1016/j.chemosphere.2006.10.061.
   PubMed Web of Science ®Google Scholar
• Holmes, E., J. V. Li, T. Athanasiou, H. Ashrafian, and J. K. Nicholson. 2011. Understanding the role of gut microbiome-host metabolic signal disruption in health and disease. Trends Microbiol. 19:349–59. doi:10.1016/j.tim.2011.05.006.
   PubMed Web of Science ®Google Scholar
• Humason, G. L. 1962. Animal Tissue Techniques. San Francisco, USA: W.H. Freeman & Company.
   Google Scholar
• Jiménez-Tenorio, N., M. J. Salamanca, E. García-Luque, M. L. González de Canales, and T. A. DelValls. 2008. Chronic bioassay in benthic fish for the assessment of the quality of sediments in different areas of the coast of Spain impacted by acute and chronic oil spills. Environ. Toxicol. 23:634–42. doi:10.1002/tox.20420.
   PubMed Web of Science ®Google Scholar
• Jonsson, G., R. K. Bechmann, S. D. Bamber, and T. Baussant. 2004. Bioconcentration, biotransformation, and elimination of polycyclic aromatic hydrocarbons in Sheepshead minnows (Cyprinodon variegatus) exposed to contaminated seawater. Environ. Toxicol. Chem. 23:1538–48. doi:10.1897/03-173.
   PubMed Web of Science ®Google Scholar
• Kammann, U. 2007. PAH metabolites in bile fluids of dab (Limanda limanda) and flounder (Platichthys flesus) - Spatial distribution and seasonal changes. Environ. Sci. Pollut. Res. 14:102–08. doi:10.1065/espr2006.05.308.
   PubMed Web of Science ®Google Scholar
• Keith, L. H. 2014. The source of U.S. EPA’s sixteen PAH priority pollutants. Polycycl. Aromat. Compd. 35:147–60. doi:10.1080/10406638.2014.892886.
   Web of Science ®Google Scholar
• Khan, R. A. 2003. Health of flatfish from localities in Placentia Bay, Newfoundland, contaminated with petroleum and PCBs. Arch. Environ. Contam. Toxicol. 44:485–92. doi:10.1007/s00244-002-2063-9.
   PubMed Web of Science ®Google Scholar
• Khan, R. A., and J. F. Payne. 2005. Influence of a crude oil dispersant, Corexit 9527, and dispersed oil on capelin (Mallotus villosus), Atlantic cod (Gadus morhua), longhorn sculpin (Myoxocephalus octodecemspinosus), and cunner (Tautogolabrus adspersus). Bull. Environ. Contam. Toxicol. 75:50–56. doi:10.1007/s00128-005-0717-9.
   PubMed Web of Science ®Google Scholar
• Kim, B. R., J. Shin, R. B. Guevarra, J. H. Lee, D. W. Kim, K. H. Seol, J.-H. Lee, H. B. Kim, and R. E. Isaacson. 2017. Deciphering diversity indices for a better understanding of microbial communities. J. Microbiol. Biotechnol. 27:2089–93. doi:10.4014/jmb.1709.09027.
   PubMed Web of Science ®Google Scholar
• Kinross, J. M., A. W. Darzi, and J. K. Nicholson. 2011. Gut microbiome-host interactions in health and disease. Genome Med. 3:14. doi:10.1186/gm228.
   PubMed Web of Science ®Google Scholar
• Klindworth, A., E. Pruesse, T. Schweer, J. Peplies, C. Quast, M. Horn, and F. O. Glöckner. 2013. Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies. Nucleic Acids Res. 41:e1. doi:10.1093/nar/gks808.
   PubMed Web of Science ®Google Scholar
• Klinger, D. H., J. J. Dale, B. E. Machado, J. P. Incardona, C. J. Farwell, and B. A. Block. 2015. Exposure to Deepwater Horizon weathered crude oil increases routine metabolic demand in chub mackerel, Scomber japonicus. Mar. Pollut. Bull. 98:259–66. doi:10.1016/j.marpolbul.2015.06.039.
   PubMed Web of Science ®Google Scholar
• Krahn, M. M., D. G. Burrows, W. D. MacLeod, and D. C. Malins. 1987. Determination of individual metabolites of aromatic compounds in hydrolyzed bile of English sole (Parophrys vetulus) from polluted sites in Puget Sound, Washington. Arch. Environ. Contam. Toxicol. 16:511–22. doi:10.1007/BF01055807.
   PubMed Web of Science ®Google Scholar
• Kruskal, J. B. 1964. Nonmetric multidimensional scaling: A numerical method. Psychometrika 29:115–29. doi:10.1007/BF02289694.
   Web of Science ®Google Scholar
• Kvenvolden, K. A., and C. K. Cooper. 2003. Natural seepage of crude oil into the marine environment. Geo-Mar. Lett. 23:140–46.
   Web of Science ®Google Scholar
• Laffon, B., E. Pásaro, and V. Valdiglesias. 2016. Effects of exposure to oil spills on human health: Updated review. J. Toxicol. Environ. Health B 19:105–28. doi:10.1080/10937404.2016.1168730.
   PubMed Web of Science ®Google Scholar
• Lawrence, K. G., A. P. Keil, S. Garantziotis, D. M. Umbach, P. A. Stewart, M. R. Stenzel, J. A. McGrath, W. B. Jackson, R. K. Kwok, M. D. Curry, et al. 2020. Lung function in oil spill responders 4-6 years after the Deepwater Horizon disaster. J. Toxicol. Environ. Health A 83:233–48. doi:10.1080/15287394.2020.1745111.
   PubMed Web of Science ®Google Scholar
• Leadly, T. A., L. D. Arcand-Hoy, G. D. Haffner, and C. D. Metcalfe. 1999. Fluorescent aromatic hydrocarbons in bile as a biomarker of exposure of brown bullheads (Ameiurus nebulosus) to contaminated sediments. Environ. Toxicol. Chem. 18:750–55. doi:10.1002/etc.5620180422.
   Web of Science ®Google Scholar
• Lee, K. W., W. J. Shim, U. H. Yim, and J. H. Kang. 2013. Acute and chronic toxicity study of the water accommodated fraction (WAF), chemically enhanced WAF (CEWAF) of crude oil and dispersant in the rock pool copepod Tigriopus japonicus. Chemosphere 92:1161–68. doi:10.1016/j.chemosphere.2013.01.080.
   PubMed Web of Science ®Google Scholar
• Legendre, P., and M. De Cáceres. 2013. Beta diversity as the variance of community data: Dissimilarity coefficients and partitioning. Ecol. Lett. 16:951–63. doi:10.1111/ele.12141.
   PubMed Web of Science ®Google Scholar
• Lin, E. L. C., S. M. Cormier, and R. N. Racine. 1994. Synchronous fluorometric measurement of metabolites of polycyclic aromatic hydrocarbons in the bile of brown bullhead. Environ. Toxicol. Chem. 13:707–15. doi:10.1002/etc.5620130504.
   Web of Science ®Google Scholar
• Lin, E. L. C., S. M. Cormier, R. N. Racine, and J. A. Torsella. 1996. Fish biliary polycyclic aromatic hydrocarbon metabolites estimated by fixed-wavelength fluorescence: Comparison with HPLC-fluorescent detection. Ecotoxicol. Environ. Saf. 35:16–23. doi:10.1006/eesa.1996.0077.
   PubMed Web of Science ®Google Scholar
• Linnaeus, C. 1758. Systema naturae per regna tria naturae, secundum classes, ordinus, genera, species, cum characteribus, differentiis, synonymis, locis. Tomus I. Editio decima, reformata. Impensis Direct, 824. Holmiae:Laurentii Salvii.
   Google Scholar
• Love, M., S. Anders, and W. Huber. 2014. Differential analysis of count data - the DESeq2 package. Genome Biol. 15:550. doi:10.1186/s13059-014-0550-8.
   PubMed Web of Science ®Google Scholar
• Lubecki, L., and G. Kowalewska. 2010. Distribution and Fate of polycyclic aromatic hydrocarbons (PAHs) in recent sediments from the Gulf of Gdańsk (SE Baltic). Oceanologia 52:669–703. doi:10.5697/oc.52-4.669.
   Web of Science ®Google Scholar
• Luna, L. G. 1968. Manual of histologic staining methods of the armed forces institute of pathology. New York, USA: McGraw-Hill.
   Google Scholar
• Lyons, B. P., G. D. Stentiford, M. Green, J. Bignell, K. Bateman, S. W. Feist, F. Goodsir, W. J. Reynolds, and J. E. Thain. 2004. DNA adduct analysis and histopathological biomarkers in European flounder (Platichthys flesus) sampled from UK estuaries. Mutat. Res. 552:177–86. doi:10.1016/j.mrfmmm.2004.06.016.
   PubMed Web of Science ®Google Scholar
• McMurdie, P. J., and S. Holmes. 2013. Phyloseq: An R package for reproducible interactive analysis and graphics of microbiome census data. PeerJ. 8:e61217.
   Google Scholar
• McNutt, M. K., R. Camilli, T. J. Crone, G. D. Guthrie, P. A. Hsieh, T. B. Ryerson, O. Savas, and F. Shaffer. 2012. Review of flow rate estimates of the Deepwater Horizon oil spill. Proc. Nat. Acad. Sci. USA 109:20260–67.
   PubMed Web of Science ®Google Scholar
• Murawski, S. A., W. T. Hogarth, E. B. Peebles, and L. Barbeiri. 2014. Prevalence of external skin lesions and polycyclic aromatic hydrocarbon concentrations in Gulf of of Mexico fishes, post-Deepwater Horizon. Trans. Am. Fish. Soc. 143:37–41. doi:10.1080/00028487.2014.911205.
   Web of Science ®Google Scholar
• Narrowe, A. B., M. Albuthi-Lantz, E. P. Smith, K. J. Bower, T. M. Roane, A. M. Vajda, and C. S. Miller. 2015. Perturbation and restoration of the fathead minnow gut microbiome after low-level triclosan exposure. Microbiome 3 (1):1–18. doi:10.1186/s40168-015-0069-6.
   PubMedGoogle Scholar
• Nogueira, P., M. Pacheco, M. L. Pereira, S. Mendo, and R. Jeanette. 2010. Novel potential molecular biomarkers of aquatic contamination in Dicentrarchus labrax and Liza aurata. In Interdisciplinary studies on environmental chemistry, ed. N. Hanamura, S. Suzuki, S. Mendo, C. M. Barroso, H. Iwata, and S. Tanabe, 127–38. Tokyo: Terrapub.
   Google Scholar
• Ohnishi, S., and S. Kawanishi. 2002. Double base lesions of DNA by a metabolite of carcinogenic benzo[a]pyrene. Biochem. Biophys. Res. Commun. 290:778–82. doi:10.1006/bbrc.2001.6249.
   PubMed Web of Science ®Google Scholar
• Oksanen, J., F. G. Blanchet, M. Friendly, R. Kindt, P. Legendre, D. McGlinn, P. R. Minchin, R .B. O'Hara, G .L. Simpson, P. Solymos. 2019. Vegan: Community ecology package. R Package Version 2:5.
   Google Scholar
• Pampanin, D. M., S. J. Brooks, B. E. Grøsvik, J. Le Goff, S. Meier, and M. O. Sydnes. 2017. DNA adducts in marine fish as biological marker of genotoxicity in environmental monitoring: The way forward. Mar. Environ. Res. 124:49–62. doi:10.1016/j.marenvres.2017.01.002.
   Google Scholar
• Peebua, P., M. Kruatrachue, P. Pokethitiyook, and P. Kosiyachinda. 2006. Histological effects of contaminated sediments in Mae Klong river tributaries, Thailand, on Nile tilapia, Oreochromis niloticus. ScienceAsia 32:143–50. doi:10.2306/scienceasia1513-1874.2006.32.143.
   Google Scholar
• Pelletier, E., D. Delille, and B. Delille. 2004. Crude oil bioremediation in sub-Antarctic intertidal sediments: Chemistry and toxicity of oiled residues. Mar. Environ. Res. 57:311–27. doi:10.1016/j.marenvres.2003.07.001.
   PubMed Web of Science ®Google Scholar
• Pérez-Cobas, A. E., M. J. Gosalbes, A. Friedrichs, H. Knecht, A. Artacho, K. Eismann, W. Otto, D. Rojo, R. Bargiela, M. von Bergen. 2013. Gut microbiota disturbance during antibiotic therapy: A multi-omic approach. Gut Microbiota 62:1591–601. doi:10.1136/gutjnl-2012-303184.
   PubMed Web of Science ®Google Scholar
• Perrichon, P., K. Le Menach, F. Akcha, J. Cachot, H. Budzinski, and P. Bustamante. 2016. Toxicity assessment of water-accommodated fractions from two different oils using a zebrafish (Danio rerio) embryo-larval bioassay with a multilevel approach. Sci. Total Environ. 568:952–66. doi:10.1016/j.scitotenv.2016.04.186.
   PubMed Web of Science ®Google Scholar
• Peterson, C. H., S. D. Rice, J. W. Short, D. Esler, J. L. Bodkin, B. E. Ballachey, and D. B. Irons. 2003. Long-term ecosystem response to the Exxon Valdez oil spill. Science 302:2082–86. doi:10.1126/science.1084282.
   PubMed Web of Science ®Google Scholar
• Poleksic, V., and V. Mitrovic-Tutundzic. 1994. Fish gills as a monitor of sublethal and chronic effects of pollution. In Sublethal and Chronic Effects of Pollutants on Freshwater Fish, ed. R. Müller, R. Lloyd, and U. K. Cambridge, 339–52. Cambridge: University Press.
   Google Scholar
• R Core Team. 2018. R: A language and environment for statistical computing. Vienna, Austria: R Foundation for Statistical Computing.
   Google Scholar
• Ramírez, C., J. Coronado, A. Silva, and J. Romero. 2018. Cetobacterium is a major component of the microbiome of giant Amazonian fish (Arapaima gigas) in Ecuador. Animals 8:189. doi:10.3390/ani8110189.
   Web of Science ®Google Scholar
• Ramírez, C., and J. Romero. 2017. The microbiome of Seriola lalandi of wild and aquaculture origin reveals differences in composition and potential function. Front. Microbiol. 8:1–10. doi:10.3389/fmicb.2017.01844.
   PubMed Web of Science ®Google Scholar
• Rognes, T., T. Flouri, B. Nichols, C. Quince, and F. Mahé. 2016. VSEARCH: A versatile open source tool for metagenomics. PeerJ. 4:e2584. doi:10.7717/peerj.2584.
   PubMed Web of Science ®Google Scholar
• Rosenfeld, C. S. 2017. Gut dysbiosis in animals due to environmental chemical exposures. Front. Cell Infect. Microbiol. 7:396. doi:10.3389/fcimb.2017.00396.
   PubMed Web of Science ®Google Scholar
• Saco-Álvarez, L., J. Bellas, Ó. Nieto, J. M. Bayona, J. Albaigés, and R. Beiras. 2008. Toxicity and phototoxicity of water-accommodated fraction obtained from Prestige fuel oil and Marine fuel oil evaluated by marine bioassays. Sci. Total Environ. 394:275–82. doi:10.1016/j.scitotenv.2008.01.045.
   PubMed Web of Science ®Google Scholar
• Sakuragui, M. M., J. R. Sanches, and M. N. Fernandes. 2003. Gill chloride cell proliferation and respiratory responses to hypoxia of the Neotropical erythrinid fish Hoplias malabaricus. J. Comp. Physiol. B 173:309–17. doi:10.1007/s00360-003-0337-9.
   PubMed Web of Science ®Google Scholar
• Salamat, N., and M. Zarie. 2016. Fish histopathology as a tool for use in marine environment monitoring: A review. Comp. Clin. Path. 25:1273–78. doi:10.1007/s00580-014-2037-0.
   Google Scholar
• Schwaiger, J., R. Wanke, S. Adam, M. Pawert, W. Honnen, and R. Triebskorn. 1997. The use of histopathological indicators to evaluate contaminant-related stress in fish. J. Aquat. Ecosyst. Stress Recovery 6:75–86. doi:10.1023/A:1008212000208.
   Google Scholar
• Shekhar, S., A. Sundaramanickam, and T. Balasubramanian. 2015. Biosurfactant producing microbes and their potential applications: A review. Crit. Rev. Environ. Sci. Technol. 45:1522–54. doi:10.1080/10643389.2014.955631.
   Web of Science ®Google Scholar
• Silva, A. G., and C. B. R. Martinez. 2007. Morphological changes in the kidney of a fish living in an urban stream. Environ. Toxicol. Pharmacol. 23:185–92. doi:10.1016/j.etap.2006.08.009.
   PubMed Web of Science ®Google Scholar
• Simonato, J. D., C. L. B. Guedes, and C. B. R. Martinez. 2008. Biochemical, physiological, and histological changes in the neotropical fish Prochilodus lineatus exposed to diesel oil. Ecotoxicol. Environ. Saf. 69:112–20. doi:10.1016/j.ecoenv.2007.01.012.
   PubMed Web of Science ®Google Scholar
• Simpson, S. L., O. Campana, and K. T. Ho. 2017. Sediment toxicity testing. In Marine ecotoxicology, ed. J. Blasco, P. M. Chapman, O. Campana, and M. Hampel, 199–237. Orlando, FL: Academic Press.
   Google Scholar
• Singer, M. M., D. Aurand, G. E. Bragin, J. R. Clark, G. M. Coelho, M. L. Sowby, and R. S. Tjeerdema. 2000. Standardization of the preparation and quantitation of water-accommodated fractions of petroleum for toxicity testing. Mar. Pollut. Bull. 40:1007–16. doi:10.1016/S0025-326X(00)00045-X.
   Web of Science ®Google Scholar
• Singer, M. M., D. V. Aurand, G. M. Coelho, G. E. Bragin, J. R. Clark, M. Sowby, and R. S. Tjeerdema. 2001. Making, measuring, and using water-accommodated fractions of petroleum for toxicity testing. In Proceedings of the 2001 International Oil Spill Conference, 1269–1274. Washington, D.C: American Petroleum Institute.
   Google Scholar
• Sokal, R. R., and F. J. Rohlf. 2012. Biometry. 4th ed. New York, USA: W.H. Freeman and Company.
   Google Scholar
• Solangi, M., and R. M. Overstreet. 1982. Histopathological changes in two estuarine fishes, Menidia beryllina (Cope) and Trinectes maculatus (Bloch and Schneider), exposed to crude oil and its water soluble fractions. J. Fish Dis. 5:13–35. doi:10.1111/j.1365-2761.1982.tb00453.x.
   Web of Science ®Google Scholar
• Steinel, N. C., and D. I. Bolnick. 2017. Melanomacrophage centers as a histological indicator of immune function in fish and other poikilotherms. Front. Immunol. 8:827. doi:10.3389/fimmu.2017.00827.
   PubMed Web of Science ®Google Scholar
• Stentiford, G. D., M. Longshaw, B. P. Lyons, G. Jones, M. Green, and S. W. Feist. 2003. Histopathological biomarkers in estuarine fish species for the assessment of biological effects of contaminants. Mar. Environ. Res. 55:137–59. doi:10.1016/S0141-1136(02)00212-X.
   PubMed Web of Science ®Google Scholar
• Stevanovic, M., S. Gasic, M. Pipal, L. Blahova, D. Brkic, N. Neskovic, and K. Hilscherova. 2017. Toxicity of clomazone and its formulations to zebrafish Embryos (Danio rerio). Aquat. Toxicol. 188:54–63. doi:10.1016/j.aquatox.2017.04.007.
   PubMed Web of Science ®Google Scholar
• Teramoto, M., M. Ohuchi, A. Hatmanti, Y. Darmayati, Y. Widyastuti, S. Harayama, and Y. Fukunaga. 2011. Oleibacter Marinus gen. nov., sp. nov., a bacterium that degrades petroleum aliphatic hydrocarbons in a tropical marine environment. Int. J. Syst. Evol. Microbiol. 61:375–80. doi:10.1099/ijs.0.018671-0.
   PubMed Web of Science ®Google Scholar
• Weiss, S., Z. Z. Xu, S. Peddada, A. Amir, K. Bittinger, A. Gonzalez, C. Lozupone, J. R. Zaneveld, Y. Vázquez-Baeza, A. Birmingham. 2017. Normalization and microbial differential abundance strategies depend upon data characteristics. Microbiome 5:27. doi:10.1186/s40168-017-0237-y.
   PubMed Web of Science ®Google Scholar
• Welch, B. L. 1951. On the comparison of several mean values: An alternative approach. Biometrika 38:330–35. doi:10.1093/biomet/38.3-4.330.
   Web of Science ®Google Scholar
• Whitehead, A., B. Dubansky, C. Bodinier, T. I. Garcia, S. Miles, C. Pilley, V. Raghunathan, J. L. Roach, N. Walker, R. B. Walter. 2011. Genomic and physiological footprint of the Deepwater Horizon oil spill on resident marsh fishes. Proc. Natl. Acad. Sci. USA 109:20298–302.
   PubMed Web of Science ®Google Scholar
• Yancheva, V., I. Velcheva, S. Stoyanova, and E. Georgieva. 2016. Histological biomarkers in fish as a tool in ecological risk assessment and monitoring programs: A review. Appl. Ecol. Environ. Res. 14:47–75. doi:10.15666/aeer/1401_047075.
   Web of Science ®Google Scholar
• Yuan, J., Q. Lai, F. Sun, T. Zheng, and Z. Shao. 2015. The diversity of PAH-degrading bacteria in a deep-sea water column above the Southwest Indian Ridge. Front. Microbiol. 6:853. doi:10.3389/fmicb.2015.00853.
   PubMed Web of Science ®Google Scholar
• Zhu, L., K. Qu, B. Xia, X. Sun, and B. Chen. 2016. Transcriptomic response to water accommodated fraction of crude oil exposure in the gill of Japanese flounder, Paralichthys olivaceus. Mar. Pollut. Bull. 106:283–91. doi:10.1016/j.marpolbul.2015.12.022.
   PubMed Web of Science ®Google Scholar