Genetic controls of DNA damage avoidance in response to acetaldehyde in fission yeast

References

• WHO. Global status report on alcohol and health 2014. World Health Organization: http://www.who.int/substance_abuse/publications/global_alcohol_report/msb_gsr_2014_1.pdf
   Google Scholar
• Boffetta P, Hashibe M, La Vecchia C, Zatonski W, Rehm J. The burden of cancer attributable to alcohol drinking. Int J Cancer 2006; 119:884-7; PMID:16557583; http://dx.doi.org/10.1002/ijc.21903
   PubMed Web of Science ®Google Scholar
• Seitz HK, Pelucchi C, Bagnardi V, La Vecchia C. Epidemiology and pathophysiology of alcohol and breast cancer: Update 2012. Alcohol Alcohol 2012; 47:204-12; PMID:22459019; http://dx.doi.org/10.1093/alcalc/ags011
   PubMed Web of Science ®Google Scholar
• Nelson DE, Jarman DW, Rehm J, Greenfield TK, Rey G, Kerr WC, Miller P, Shield KD, Ye Y, Naimi TS. Alcohol-attributable cancer deaths and years of potential life lost in the United States. Am J Public Health 2013; 103:641-8; PMID:23409916; http://dx.doi.org/10.2105/AJPH.2012.301199
   PubMed Web of Science ®Google Scholar
• Rehm J, Shield KD. Global alcohol-attributable deaths from cancer, liver cirrhosis, and injury in 2010. Alcohol Res 2013; 35:174-83; PMID:24881325
   PubMed Web of Science ®Google Scholar
• Brooks PJ, Zakhari S. Acetaldehyde and the genome: beyond nuclear DNA adducts and carcinogenesis. Environ Mol Mutagen 2014; 55:77-91; PMID:24282063; http://dx.doi.org/10.1002/em.21824
   PubMed Web of Science ®Google Scholar
• Clauson C, Scharer OD, Niedernhofer L. Advances in understanding the complex mechanisms of DNA interstrand cross-link repair. Cold Spring Harb Perspect Biol 2013; 5:a012732; PMID:24086043; http://dx.doi.org/10.1101/cshperspect.a012732
   PubMed Web of Science ®Google Scholar
• Kottemann MC, Smogorzewska A. Fanconi anaemia and the repair of Watson and Crick DNA crosslinks. Nature 2013; 493:356-63; PMID:23325218; http://dx.doi.org/10.1038/nature11863
   PubMed Web of Science ®Google Scholar
• Moldovan GL, D'Andrea AD. How the fanconi anemia pathway guards the genome. Annu Rev Genet 2009; 43:223-49; PMID:19686080; http://dx.doi.org/10.1146/annurev-genet-102108-134222
   PubMed Web of Science ®Google Scholar
• Walden H, Deans AJ. The Fanconi anemia DNA repair pathway: structural and functional insights into a complex disorder. Annu Rev Biophys 2014; 43:257-78; PMID:24773018; http://dx.doi.org/10.1146/annurev-biophys-051013-022737
   PubMed Web of Science ®Google Scholar
• Duxin JP, Dewar JM, Yardimci H, Walter JC. Repair of a DNA-protein crosslink by replication-coupled proteolysis. Cell 2014; 159:346-57; PMID:25303529; http://dx.doi.org/10.1016/j.cell.2014.09.024
   PubMed Web of Science ®Google Scholar
• Auerbach AD. Fanconi anemia and its diagnosis. Mutat Res 2009; 668:4-10; PMID:19622403; http://dx.doi.org/10.1016/j.mrfmmm.2009.01.013
   PubMed Web of Science ®Google Scholar
• Dong H, Nebert DW, Bruford EA, Thompson DC, Joenje H, Vasiliou V. Update of the human and mouse Fanconi anemia genes. Hum Genomics 2015; 9:32; PMID:26596371; http://dx.doi.org/10.1186/s40246-015-0054-y
   PubMed Web of Science ®Google Scholar
• Mechilli M, Schinoppi A, Kobos K, Natarajan AT, Palitti F. DNA repair deficiency and acetaldehyde-induced chromosomal alterations in CHO cells. Mutagenesis 2008; 23:51-6; PMID:17989147; http://dx.doi.org/10.1093/mutage/gem042
   PubMed Web of Science ®Google Scholar
• Lorenti Garcia C, Mechilli M, Proietti De Santis L, Schinoppi A, Kobos K, Palitti F. Relationship between DNA lesions, DNA repair and chromosomal damage induced by acetaldehyde. Mutat Res 2009; 662:3-9; PMID:19084543; http://dx.doi.org/10.1016/j.mrfmmm.2008.11.008
   PubMed Web of Science ®Google Scholar
• Abraham J, Balbo S, Crabb D, Brooks PJ. Alcohol metabolism in human cells causes DNA damage and activates the Fanconi anemia-breast cancer susceptibility (FA-BRCA) DNA damage response network. Alcohol Clin Exp Res 2011; 35:2113-20; PMID:21919919; http://dx.doi.org/10.1111/j.1530-0277.2011.01563.x
   PubMed Web of Science ®Google Scholar
• Marietta C, Thompson LH, Lamerdin JE, Brooks PJ. Acetaldehyde stimulates FANCD2 monoubiquitination, H2AX phosphorylation, and BRCA1 phosphorylation in human cells in vitro: implications for alcohol-related carcinogenesis. Mutat Res 2009; 664:77-83; PMID:19428384; http://dx.doi.org/10.1016/j.mrfmmm.2009.03.011
   PubMed Web of Science ®Google Scholar
• Langevin F, Crossan GP, Rosado IV, Arends MJ, Patel KJ. Fancd2 counteracts the toxic effects of naturally produced aldehydes in mice. Nature 2011; 475:53-8; PMID:21734703; http://dx.doi.org/10.1038/nature10192
   PubMed Web of Science ®Google Scholar
• Garaycoechea JI, Crossan GP, Langevin F, Daly M, Arends MJ, Patel KJ. Genotoxic consequences of endogenous aldehydes on mouse haematopoietic stem cell function. Nature 2012; 489:571-5; PMID:22922648; http://dx.doi.org/10.1038/nature11368
   PubMed Web of Science ®Google Scholar
• Matsufuji Y, Fujimura S, Ito T, Nishizawa M, Miyaji T, Nakagawa J, Ohyama T, Tomizuka N, Nakagawa T. Acetaldehyde tolerance in Saccharomyces cerevisiae involves the pentose phosphate pathway and oleic acid biosynthesis. Yeast 2008; 25:825-33; PMID:19061187; http://dx.doi.org/10.1002/yea.1637
   PubMed Web of Science ®Google Scholar
• Brendel M, Marisco G, Ganda I, Wolter R, Pungartnik C. DNA repair mutant pso2 of Saccharomyces cerevisiae is sensitive to intracellular acetaldehyde accumulated by disulfiram-mediated inhibition of acetaldehyde dehydrogenase. Genet Mol Res 2010; 9:48-57; PMID:20082270; http://dx.doi.org/10.4238/vol9-1gmr695
   PubMed Web of Science ®Google Scholar
• Ristow H, Seyfarth A, Lochmann ER. Chromosomal damages by ethanol and acetaldehyde in Saccharomyces cerevisiae as studied by pulsed field gel electrophoresis. Mutat Res 1995; 326:165-70; PMID:7529880; http://dx.doi.org/10.1016/0027-5107(94)00165-2
   PubMed Web of Science ®Google Scholar
• Fritsch ES, Schacherer J, Bleykasten-Grosshans C, Souciet JL, Potier S, de Montigny J. Influence of genetic background on the occurrence of chromosomal rearrangements in Saccharomyces cerevisiae. BMC Genomics 2009; 10:99; PMID:19267901; http://dx.doi.org/10.1186/1471-2164-10-99
   PubMed Web of Science ®Google Scholar
• Ralser M, Kuhl H, Ralser M, Werber M, Lehrach H, Breitenbach M, Timmermann B. The Saccharomyces cerevisiae W303-K6001 cross-platform genome sequence: insights into ancestry and physiology of a laboratory mutt. Open Biol 2012; 2:120093; PMID:22977733; http://dx.doi.org/10.1098/rsob.120093
   PubMed Web of Science ®Google Scholar
• Schacherer J, Ruderfer DM, Gresham D, Dolinski K, Botstein D, Kruglyak L. Genome-wide analysis of nucleotide-level variation in commonly used Saccharomyces cerevisiae strains. PLoS One 2007; 2:e322; PMID:17389913; http://dx.doi.org/10.1371/journal.pone.0000322
   PubMedGoogle Scholar
• Forsburg SL, Rhind N. Basic methods for fission yeast. Yeast 2006; 23:173-83; PMID:16498704; http://dx.doi.org/10.1002/yea.1347
   PubMed Web of Science ®Google Scholar
• Hoffman CS, Wood V, Fantes PA. An Ancient Yeast for Young Geneticists: A Primer on the Schizosaccharomyces pombe model system. Genetics 2015; 201:403-23; PMID:26447128; http://dx.doi.org/10.1534/genetics.115.181503
   PubMed Web of Science ®Google Scholar
• Wood V, Gwilliam R, Rajandream MA, Lyne M, Lyne R, Stewart A, Sgouros J, Peat N, Hayles J, Baker S, et al. The genome sequence of Schizosaccharomyces pombe. Nature 2002; 415:871-80; PMID:11859360; http://dx.doi.org/10.1038/nature724
   PubMed Web of Science ®Google Scholar
• Sipiczki M. Where does fission yeast sit on the tree of life? Genome Biol 2000; 1: reviews1011; http://dx.doi.org/10.1186/gb-2000-1-2-reviews1011
   Google Scholar
• Chen CH, Ferreira JC, Gross ER, Mochly-Rosen D. Targeting aldehyde dehydrogenase 2: new therapeutic opportunities. Physiol Rev 2014; 94:1-34; PMID:24382882; http://dx.doi.org/10.1152/physrev.00017.2013
   PubMed Web of Science ®Google Scholar
• Noguchi E, Noguchi C, Du LL, Russell P. Swi1 prevents replication fork collapse and controls checkpoint kinase Cds1. Mol Cell Biol 2003; 23:7861-74; PMID:14560029; http://dx.doi.org/10.1128/MCB.23.21.7861-7874.2003
   PubMed Web of Science ®Google Scholar
• Lisby M, Rothstein R, Mortensen UH. Rad52 forms DNA repair and recombination centers during S phase. Proc Natl Acad Sci U S A 2001; 98:8276-82; PMID:11459964; http://dx.doi.org/10.1073/pnas.121006298
   PubMed Web of Science ®Google Scholar
• Leman AR, Noguchi E. Local and global functions of Timeless and Tipin in replication fork protection. Cell Cycle 2012; 11:3945-55; PMID:22987152; http://dx.doi.org/10.4161/cc.21989
   PubMed Web of Science ®Google Scholar
• Noguchi E, Noguchi C, McDonald WH, Yates JR, 3rd, Russell P. Swi1 and Swi3 are components of a replication fork protection complex in fission yeast. Mol Cell Biol 2004; 24:8342-55; PMID:15367656; http://dx.doi.org/10.1128/MCB.24.19.8342-8355.2004
   PubMed Web of Science ®Google Scholar
• Ansbach AB, Noguchi C, Klansek IW, Heidlebaugh M, Nakamura TM, Noguchi E. RFCCtf18 and the Swi1-Swi3 complex function in separate and redundant pathways required for the stabilization of replication forks to facilitate sister chromatid cohesion in Schizosaccharomyces pombe. Mol Biol Cell 2008; 19:595-607; PMID:18045993; http://dx.doi.org/10.1091/mbc.E07-06-0618
   PubMed Web of Science ®Google Scholar
• Nyberg KA, Michelson RJ, Putnam CW, Weinert TA. Toward maintaining the genome: DNA Damage and Replication Checkpoints. Annu Rev Genet 2002; 36:617-56; PMID:12429704; http://dx.doi.org/10.1146/annurev.genet.36.060402.113540
   PubMed Web of Science ®Google Scholar
• Noguchi E, Ansbach AB, Noguchi C, Russell P. Assays used to study the DNA replication checkpoint in fission yeast. Methods Mol Biol 2009; 521:493-507; PMID:19563125; http://dx.doi.org/10.1007/978-1-60327-815-7_28
   PubMedGoogle Scholar
• Doe CL, Osman F, Dixon J, Whitby MC. DNA repair by a Rad22-Mus81-dependent pathway that is independent of Rhp51. Nucleic Acids Res 2004; 32:5570-81; PMID:15486206; http://dx.doi.org/10.1093/nar/gkh853
   PubMed Web of Science ®Google Scholar
• Khasanov FK, Salakhova AF, Chepurnaja OV, Korolev VG, Bashkirov VI. Identification and characterization of the rlp1+, the novel Rad51 paralog in the fission yeast Schizosaccharomyces pombe. DNA Repair (Amst) 2004; 3:1363-74; PMID:15336631; http://dx.doi.org/10.1016/j.dnarep.2004.05.010
   PubMedGoogle Scholar
• Stingele J, Schwarz MS, Bloemeke N, Wolf PG, Jentsch S. A DNA-dependent protease involved in DNA-protein crosslink repair. Cell 2014; 158:327-38; PMID:24998930; http://dx.doi.org/10.1016/j.cell.2014.04.053
   PubMed Web of Science ®Google Scholar
• Collis SJ, Ciccia A, Deans AJ, Horejsi Z, Martin JS, Maslen SL, Skehel JM, Elledge SJ, West SC, Boulton SJ. FANCM and FAAP24 function in ATR-mediated checkpoint signaling independently of the Fanconi anemia core complex. Mol Cell 2008; 32:313-24; PMID:18995830; http://dx.doi.org/10.1016/j.molcel.2008.10.014
   PubMed Web of Science ®Google Scholar
• Kuo HK, McMahan S, Rota CM, Kohl KP, Sekelsky J. Drosophila FANCM helicase prevents spontaneous mitotic crossovers generated by the MUS81 and SLX1 nucleases. Genetics 2014; 198:935-45; PMID:25205745; http://dx.doi.org/10.1534/genetics.114.168096
   PubMed Web of Science ®Google Scholar
• Sun W, Nandi S, Osman F, Ahn JS, Jakovleska J, Lorenz A, Whitby MC. The FANCM ortholog Fml1 promotes recombination at stalled replication forks and limits crossing over during DNA double-strand break repair. Mol Cell 2008; 32:118-28; PMID:18851838; http://dx.doi.org/10.1016/j.molcel.2008.08.024
   PubMed Web of Science ®Google Scholar
• Nandi S, Whitby MC. The ATPase activity of Fml1 is essential for its roles in homologous recombination and DNA repair. Nucleic Acids Res 2012; 40:9584-95; PMID:22844101; http://dx.doi.org/10.1093/nar/gks715
   PubMed Web of Science ®Google Scholar
• Budzowska M, Graham TG, Sobeck A, Waga S, Walter JC. Regulation of the Rev1-pol zeta complex during bypass of a DNA interstrand cross-link. EMBO J 2015; 34:1971-85; PMID:26071591; http://dx.doi.org/10.15252/embj.201490878
   PubMed Web of Science ®Google Scholar
• Fu D, Dudimah FD, Zhang J, Pickering A, Paneerselvam J, Palrasu M, Wang H, Fei P. Recruitment of DNA polymerase eta by FANCD2 in the early response to DNA damage. Cell Cycle 2013; 12:803-9; PMID:23388460; http://dx.doi.org/10.4161/cc.23755
   PubMed Web of Science ®Google Scholar
• Moreno S, Klar A, Nurse P. Molecular genetic analysis of fission yeast Schizosaccharomyces pombe. Methods Enzymol 1991; 194:795-823; PMID:2005825; http://dx.doi.org/10.1016/0076-6879(91)94059-L
   PubMed Web of Science ®Google Scholar
• Alfa C, Fantes P, Hyams J, McLeod M, Warbrick E. Experiments with Fission Yeast: A laboratory course manual. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press, 1993.
   Google Scholar
• Noguchi C, Rapp JB, Skorobogatko YV, Bailey LD, Noguchi E. Swi1 associates with chromatin through the DDT domain and recruits Swi3 to preserve genomic integrity. PLoS One 2012; 7:e43988; PMID:22952839; http://dx.doi.org/10.1371/journal.pone.0043988
   PubMedGoogle Scholar
• Rapp JB, Noguchi C, Das MM, Wong LK, Ansbach AB, Holmes AM, Arcangioli B, Noguchi E. Checkpoint-dependent and -independent roles of Swi3 in replication fork recovery and sister chromatid cohesion in fission yeast. PLoS One 2010; 5:e13379; PMID:20967229; http://dx.doi.org/10.1371/journal.pone.0013379
   PubMed Web of Science ®Google Scholar
• Krawchuk MD, Wahls WP. High-efficiency gene targeting in Schizosaccharomyces pombe using a modular, PCR-based approach with long tracts of flanking homology. Yeast 1999; 15:1419-27; PMID:10509024; http://dx.doi.org/10.1002/(SICI)1097-0061(19990930)15:13%3c1419::AID-YEA466%3e3.0.CO;2-Q
   PubMed Web of Science ®Google Scholar
• Sato M, Dhut S, Toda T. New drug-resistant cassettes for gene disruption and epitope tagging in Schizosaccharomyces pombe. Yeast 2005; 22:583-91; PMID:15942936; http://dx.doi.org/10.1002/yea.1233
   PubMed Web of Science ®Google Scholar
• al-Khodairy F, Fotou E, Sheldrick KS, Griffiths DJ, Lehmann AR, Carr AM. Identification and characterization of new elements involved in checkpoint and feedback controls in fission yeast. Mol Biol Cell 1994; 5:147-60; PMID:8019001; http://dx.doi.org/10.1091/mbc.5.2.147
   PubMed Web of Science ®Google Scholar
• Coulon S, Noguchi E, Noguchi C, Du LL, Nakamura TM, Russell P. Rad22Rad52-dependent repair of ribosomal DNA repeats cleaved by Slx1-Slx4 endonuclease. Mol Biol Cell 2006; 17:2081-90; PMID:16467377; http://dx.doi.org/10.1091/mbc.E05-11-1006
   PubMed Web of Science ®Google Scholar
• Lambert S, Watson A, Sheedy DM, Martin B, Carr AM. Gross chromosomal rearrangements and elevated recombination at an inducible site-specific replication fork barrier. Cell 2005; 121:689-702; PMID:15935756; http://dx.doi.org/10.1016/j.cell.2005.03.022
   PubMed Web of Science ®Google Scholar
• Carr AM, Schmidt H, Kirchhoff S, Muriel WJ, Sheldrick KS, Griffiths DJ, Basmacioglu CN, Subramani S, Clegg M, Nasim A, et al. The rad16 gene of Schizosaccharomyces pombe: a homolog of the RAD1 gene of Saccharomyces cerevisiae. Mol Cell Biol 1994; 14:2029-40; PMID:8114734; http://dx.doi.org/10.1128/MCB.14.3.2029
   PubMed Web of Science ®Google Scholar
• Rodel C, Kirchhoff S, Schmidt H. The protein sequence and some intron positions are conserved between the switching gene swi10 of Schizosaccharomyces pombe and the human excision repair gene ERCC1. Nucleic Acids Res 1992; 20:6347-53; PMID:1475195; http://dx.doi.org/10.1093/nar/20.23.6347
   PubMed Web of Science ®Google Scholar
• Sheedy DM, Dimitrova D, Rankin JK, Bass KL, Lee KM, Tapia-Alveal C, Harvey SH, Murray JM, O'Connell MJ. Brc1-mediated DNA repair and damage tolerance. Genetics 2005; 171:457-68; PMID:15972456; http://dx.doi.org/10.1534/genetics.105.044966
   PubMed Web of Science ®Google Scholar
• Sugimoto T, Igawa E, Tanihigashi H, Matsubara M, Ide H, Ikeda S. Roles of base excision repair enzymes Nth1p and Apn2p from Schizosaccharomyces pombe in processing alkylation and oxidative DNA damage. DNA Repair (Amst) 2005; 4:1270-80; PMID:16076563; http://dx.doi.org/10.1016/j.dnarep.2005.06.009
   PubMed Web of Science ®Google Scholar
• Sommariva E, Pellny TK, Karahan N, Kumar S, Huberman JA, Dalgaard JZ. Schizosaccharomyces pombe Swi1, Swi3, and Hsk1 are components of a novel S-phase response pathway to alkylation damage. Mol Cell Biol 2005; 25:2770-84; PMID:15767681; http://dx.doi.org/10.1128/MCB.25.7.2770-2784.2005
   PubMed Web of Science ®Google Scholar