The elusive role of mitotic bookmarking in transcriptional regulation: Insights from Sox2

References

• Egli D, Rosains J, Birkhoff G, Eggan K. Developmental reprogramming after chromosome transfer into mitotic mouse zygotes. Nature 2007; 447:679-85; PMID:17554301; http://dx.doi.org/10.1038/nature05879
   PubMed Web of Science ®Google Scholar
• Halley-Stott RP, Jullien J, Pasque V, Gurdon J. Mitosis gives a brief window of opportunity for a change in gene transcription. PLoS Biol 2014; 12:e1001914; PMID:25072650; http://dx.doi.org/10.1371/journal.pbio.1001914
   PubMed Web of Science ®Google Scholar
• Pauklin S, Madrigal P, Bertero A, Vallier L. Initiation of stem cell differentiation involves cell cycle-dependent regulation of developmental genes by Cyclin D. Genes Dev 2016; 30:421-33; PMID:26883361; http://dx.doi.org/10.1101/gad.271452.115
   PubMed Web of Science ®Google Scholar
• Pauklin S, Vallier L. The cell-cycle state of stem cells determines cell fate propensity. Cell 2013; 155:135-47; PMID:24074866; http://dx.doi.org/10.1016/j.cell.2013.08.031
   PubMed Web of Science ®Google Scholar
• Zaidi SK, Young DW, Montecino M, van Wijnen AJ, Stein JL, Lian JB, Stein GS. Bookmarking the genome: maintenance of epigenetic information. J Biol Chem 2011; 286:18355-61; PMID:21454629; http://dx.doi.org/10.1074/jbc.R110.197061
   PubMed Web of Science ®Google Scholar
• Blobel GA, Kadauke S, Wang E, Lau AW, Zuber J, Chou MM, Vakoc CR. A reconfigured pattern of MLL occupancy within mitotic chromatin promotes rapid transcriptional reactivation following mitotic exit. Mol Cell 2009; 36:970-83; PMID:20064463; http://dx.doi.org/10.1016/j.molcel.2009.12.001
   PubMed Web of Science ®Google Scholar
• Zhao R, Nakamura T, Fu Y, Lazar Z, Spector DL. Gene bookmarking accelerates the kinetics of post-mitotic transcriptional re-activation. Nat Cell Biol 2011; 13:1295-304; PMID:21983563; http://dx.doi.org/10.1038/ncb2341
   PubMed Web of Science ®Google Scholar
• Chen D, Hinkley CS, Henry RW, Huang S. TBP dynamics in living human cells: constitutive association of TBP with mitotic chromosomes. Mol Biol Cell 2002; 13:276-84; PMID:11809839; http://dx.doi.org/10.1091/mbc.01-10-0523
   PubMed Web of Science ®Google Scholar
• Kadauke S, Udugama MI, Pawlicki JM, Achtman JC, Jain DP, Cheng Y, Hardison RC, Blobel GA. Tissue-specific mitotic bookmarking by hematopoietic transcription factor GATA1. Cell 2012; 150:725-37; PMID:22901805; http://dx.doi.org/10.1016/j.cell.2012.06.038
   PubMed Web of Science ®Google Scholar
• Caravaca JM, Donahue G, Becker JS, He X, Vinson C, Zaret KS. Bookmarking by specific and nonspecific binding of FoxA1 pioneer factor to mitotic chromosomes. Genes Dev 2013; 27:251-60; PMID:23355396; http://dx.doi.org/10.1101/gad.206458.112
   PubMed Web of Science ®Google Scholar
• Young DW, Hassan MQ, Yang X-Q, Galindo M, Javed A, Zaidi SK, Furcinitti P, Lapointe D, Montecino M, Lian JB, et al. Mitotic retention of gene expression patterns by the cell fate-determining transcription factor Runx2. Proc Natl Acad Sci U S A 2007; 104:3189-94; PMID:17360627; http://dx.doi.org/10.1073/pnas.0611419104
   PubMed Web of Science ®Google Scholar
• Festuccia N, Dubois A, Vandormael-Pournin S, Gallego Tejeda E, Mouren A, Bessonnard S, Mueller F, Proux C, Cohen-Tannoudji M, Navarro P. Mitotic binding of Esrrb marks key regulatory regions of the pluripotency network. Nat Cell Biol 2016; 18:1139-48; PMID:27723719; http://dx.doi.org/10.1038/ncb3418
   PubMed Web of Science ®Google Scholar
• Verdeguer F, Le Corre S, Fischer E, Callens C, Garbay S, Doyen A, Igarashi P, Terzi F, Pontoglio M. A mitotic transcriptional switch in polycystic kidney disease. Nat Med 2010; 16:106-10; PMID:19966811; http://dx.doi.org/10.1038/nm.2068
   PubMed Web of Science ®Google Scholar
• Lake RJ, Tsai PF, Choi I, Won KJ, Fan HY. RBPJ, the major transcriptional effector of notch signaling, remains associated with chromatin throughout mitosis, suggesting a role in mitotic bookmarking. PLoS Genet 2014; 10:e1004204; PMID:24603501; http://dx.doi.org/10.1371/journal.pgen.1004204
   PubMedGoogle Scholar
• Deluz C, Friman ET, Strebinger D, Benke A, Raccaud M, Callegari A, Leleu M, Manley S, Suter DM. A role for mitotic bookmarking of SOX2 in pluripotency and differentiation. Genes Dev 2016; 30:2538-50; PMID:27920086; http://dx.doi.org/10.1101/gad.289256.116
   PubMed Web of Science ®Google Scholar
• Hsiung CC-S, Bartman CR, Huang P, Ginart P, Stonestrom AJ, Keller CA, Face C, Jahn KS, Evans P, Sankaranarayanan L, et al. A hyperactive transcriptional state marks genome reactivation at the mitosis-G1 transition. Genes Dev 2016; 30:1423-39; PMID:27340175; http://dx.doi.org/10.1101/gad.280859.116
   PubMed Web of Science ®Google Scholar
• Reményi A, Lins K, Nissen LJ, Reinbold R, Schöler HR, Wilmanns M. Crystal structure of a POU/HMG/DNA ternary complex suggests differential assembly of Oct4 and Sox2 on two enhancers. Genes Dev 2003; 17:2048-59; PMID:12923055; http://dx.doi.org/10.1101/gad.269303
   PubMed Web of Science ®Google Scholar
• Cole MF, Young RA. Mapping key features of transcriptional regulatory circuitry in embryonic stem cells. Cold Spring Harb Symp Quant Biol 2008; 73:183-93; PMID:19022761; http://dx.doi.org/10.1101/sqb.2008.73.027
   PubMedGoogle Scholar
• Niwa H, Burdon T, Chambers I, Smith A. Self-renewal of pluripotent embryonic stem cells is mediated via activation of STAT3. Genes Dev 1998; 12:2048-60; PMID:9649508; http://dx.doi.org/10.1101/gad.12.13.2048
   PubMed Web of Science ®Google Scholar
• Ballabeni A, Park IH, Zhao R, Wang W, Lerou PH, Daley GQ, Kirschner MW. Cell cycle adaptations of embryonic stem cells. Proc Natl Acad Sci U A 2011; 108:19252-7; PMID:22084091; http://dx.doi.org/10.1073/pnas.1116794108
   PubMed Web of Science ®Google Scholar
• Gebhardt JC, Suter DM, Roy R, Zhao ZW, Chapman AR, Basu S, Maniatis T, Xie XS. Single-molecule imaging of transcription factor binding to DNA in live mammalian cells. Nat Methods 2013; 10:421-6; PMID:23524394; http://dx.doi.org/10.1038/nmeth.2411
   PubMed Web of Science ®Google Scholar
• Teves SS, An L, Hansen AS, Xie L, Darzacq X, Tjian R. A dynamic mode of mitotic bookmarking by transcription factors. eLife 2016; 5:e22280; PMID:27855781; http://dx.doi.org/10.7554/eLife.22280
   PubMed Web of Science ®Google Scholar
• Booth DG, Beckett AJ, Molina O, Samejima I, Masumoto H, Kouprina N, Larionov V, Prior IA, Earnshaw WC. 3D-CLEM reveals that a major portion of mitotic chromosomes is not chromatin. Mol Cell 2016; 64:790-802; PMID:27840028; http://dx.doi.org/10.1016/j.molcel.2016.10.009
   PubMed Web of Science ®Google Scholar
• Suter DM, Molina N, Gatfield D, Schneider K, Schibler U, Naef F. Mammalian genes are transcribed with widely different bursting kinetics. Science 2011; 332:472-4; PMID:21415320; http://dx.doi.org/10.1126/science.1198817
   PubMed Web of Science ®Google Scholar