Temperature-dependent regulation of rDNA condensation in Saccharomyces cerevisiae

References

• Skibbens RV. Of rings and rods: Regulating cohesin entrapment of DNA to generate Intra- and intermolecular tethers. PLoS Genet 2016; 12(10):e1006337; PMID:27788133; https://doi.org/10.1371/journal.pgen.1006337
   PubMed Web of Science ®Google Scholar
• Jeppsson K, Kanno T, Shirahige K, Sjögren C. The maintenance of chromosome structure: Positioning and functioning of SMC complexes. Nat Rev Mol Cell Biol 2014; 15(9):601-14; PMID:25145851; https://doi.org/10.1038/nrm3857
   PubMed Web of Science ®Google Scholar
• Dorsett D. Cohesin: Genomic insights into controlling gene transcription and development. Curr Opin Genet Dev 2011; 21(2):199-206; PMID:21324671; https://doi.org/10.1016/j.gde.2011.01.018
   PubMed Web of Science ®Google Scholar
• Merkenschlager M, Nora EP. CTCF and cohesin in genome folding and transcriptional. Gene Regulation Annu Rev Genomics Hum Genet 2016; 17:8.1-8.27
   Web of Science ®Google Scholar
• Ciabrelli F, Cavalli G. Chromatin-driven behavior of topologically associating domains. J Mol Biol 2015; 427(3):608-25; PMID:25280896; https://doi.org/10.1016/j.jmb.2014.09.013
   PubMed Web of Science ®Google Scholar
• Pekkala D, Heath B, Silver JC. Changes in chromatin and the phosphorylation of nuclear proteins during heat shock of Achlya ambisexualis. Mol Cell Biol 1984; 4(7):1198-205; PMID:6504045; https://doi.org/10.1128/MCB.4.7.1198
   PubMed Web of Science ®Google Scholar
• Mackey MA, Morgan WF, Dewey WC. Nuclear fragmentation and premature chromosome condensation induced by heat shock in S-phase Chinese hamster ovary cells. Cancer Res 1988; 48(22):6478-83; PMID:3180064
   PubMed Web of Science ®Google Scholar
• Flannery AV, Hill RS. The effect of heat shock on the morphology of amphibian lampbrush chromosomes. Exp Cell Res 1988; 177(1):9-18; PMID:3391242; https://doi.org/10.1016/0014-4827(88)90020-1
   PubMed Web of Science ®Google Scholar
• Roux C, Dadoune JP. Use of the acridine orange staining on smears of human spermatozoa after heat-treatment: Evaluation of the chromatin condensation. Andrologia 1988; 21(3):275-80; https://doi.org/10.1111/j.1439-0272.1989.tb02410.x
   Web of Science ®Google Scholar
• Iliakis GE, Pantelias GE. Effects of hyperthermia on chromatin condensation and nucleoli disintegration as visualized by induction of premature chromosome condensation in interphase mammalian cells. Cancer Res 1989; 49(5):1254-60; PMID:2917355
   PubMed Web of Science ®Google Scholar
• Rodriguez-Martin ML, Moreau N, Herberts C, Angelier N. Comparison between in vivo and in vitro heat-induced changes in amphibian lampbrush chromosomes. Chromosoma 1991; 100(2):79-86; PMID:2009818; https://doi.org/10.1007/BF00418240
   PubMed Web of Science ®Google Scholar
• Swanson PE, Carroll SB, Zhang XF, Mackey MA. Spontaneous premature chromosome condensation, micronucleus formation, and nonapoptotic cell death in heated HeLa S3 cells. Ultrastructural observations. Am J Pathol 1995; 146(4):963-71; PMID:7717463
   PubMed Web of Science ®Google Scholar
• Castells-Roca L, García-Martínez J, Moreno J, Herrero E, Bellí G, Pérez-Ortín JE. Heat shock response in yeast involves changes in both transcription rates and mRNA stabilities. PLoS ONE 2011; 6(2):e17272; PMID:21364882; https://doi.org/10.1371/journal.pone.0017272
   PubMed Web of Science ®Google Scholar
• Verghese J, Abrams J, Wang Y, Kevin A. Biology of the heat shock response and protein chaperones: Budding Yeast (Saccharomyces cerevisiae) as a model system. Microbiol Mol Biol Rev 2012; 76(2):115-58; PMID:22688810; https://doi.org/10.1128/MMBR.05018-11
   PubMed Web of Science ®Google Scholar
• Scherthan H, Loidl J, Schuster T, Schweizer D. Meiotic chromosome condensation and pairing in Saccharomyces cerevisiae studied by chromosome painting. Chromosoma 1992; 101(10):590-5; PMID:1424983; https://doi.org/10.1007/BF00360535
   PubMed Web of Science ®Google Scholar
• Guacci V, Hogan E, Koshland D. Chromosome condensation and sister chromatid pairing in budding yeast. J Cell Biol 1994; 125(3):517-30 ; PMID:8175878; https://doi.org/10.1083/jcb.125.3.517
   PubMed Web of Science ®Google Scholar
• Guacci V, Koshland D, Strunnikov A. A direct link between sister chromatid cohesion and chromosome condensation revealed through the analysis of MCD1 in S. cerevisiae. Cell 1997; 91(1):47-57; PMID:9335334; https://doi.org/10.1016/S0092-8674(01)80008-8
   PubMed Web of Science ®Google Scholar
• Castaño IB, Brzoska PM, Sadoff BU, Chen H, Christman MF. Mitotic chromosome condensation in the rDNA requires TRF4 and DNA topoisomerase I in Saccharomyces cerevisiae. Genes Dev 1996; 10(20):2564-76; PMID:8895658; https://doi.org/10.1101/gad.10.20.2564
   PubMed Web of Science ®Google Scholar
• Skibbens RV, Corson LB, Koshland D, Hieter P. Ctf7p is essential for sister chromatid cohesion and links mitotic chromosome structure to the DNA replication machinery. Genes Dev 1999; 13(3):307-19; PMID:9990855; https://doi.org/10.1101/gad.13.3.307
   PubMed Web of Science ®Google Scholar
• Freeman L, Aragon-Alcaide L, Strunnikov A. The condensin complex governs chromosome condensation and mitotic transmission of rDNA. J Cell Biol 2000; 149(4):811-24; PMID:10811823; https://doi.org/10.1083/jcb.149.4.811
   PubMed Web of Science ®Google Scholar
• Lavoie BD, Hogan E, Koshland D. In vivo requirements for rDNA chromosome condensation reveal two cell-cycle-regulated pathways for mitotic chromosome folding. Genes Dev 2004; 18(1):76-87; PMID:14701879; https://doi.org/10.1101/gad.1150404
   PubMed Web of Science ®Google Scholar
• Sullivan M, Higuchi T, Katis VL, Uhlmann F. Cdc14 phosphatase induces rDNA condensation and resolves cohesin-independent cohesion during budding yeast anaphase. Cell 2004; 117(4):471-82; PMID:15137940; https://doi.org/10.1016/S0092-8674(04)00415-5
   PubMed Web of Science ®Google Scholar
• Wang BD, Butylin P, Strunnikov A. Condensin function in mitotic nucleolar segregation is regulated by rDNA transcription. Cell Cycle 2006; 5(19):2260-7; PMID:16969110; https://doi.org/10.4161/cc.5.19.3292
   PubMed Web of Science ®Google Scholar
• D'Ambrosio C, Schmidt CK, Katou Y, Kelly G, Itoh T, Shirahige K, Uhlmann F. Identification of cis-acting sites for condensin loading onto budding yeast chromosomes. Genes Dev 2008; 22(16):2215-27; PMID:18708580; https://doi.org/10.1101/gad.1675708
   PubMed Web of Science ®Google Scholar
• Gard S, Light W, Xiong B, Bose T, McNairn AJ, Harris B, Fleharty B, Seidel C, Brickner JH, Gerton JL. Cohesinopathy mutations disrupt the subnuclear organization of chromatin. J Cell Biol 2009; 187(4):455-62; PMID:19948494; https://doi.org/10.1083/jcb.200906075
   PubMed Web of Science ®Google Scholar
• Lopez-Serra L, Lengronne A, Borges V, Kelly G, Uhlmann F. Budding yeast Wapl controls sister chromatid cohesion maintenance and chromosome condensation. Curr Biol 2013; 23(1):64-9; PMID:23219725; https://doi.org/10.1016/j.cub.2012.11.030
   PubMed Web of Science ®Google Scholar
• Tong K, Skibbens RV. Pds5 regulators segregate cohesion and condensation pathways in Saccharomyces cerevisiae. Proc Natl Acad Sci USA 2015; 112(22):7021-6; PMID:25986377; https://doi.org/10.1073/pnas.1501369112
   PubMed Web of Science ®Google Scholar
• Straight AF, Shou W, Dowd GJ, Turck CW, Deshaies RJ, Johnson AD, Moazed D. Net1, a Sir2-associated nucleolar protein required for rDNA silencing and nucleolar integrity. Cell 1999; 97(2):245-56; PMID:10219245; https://doi.org/10.1016/S0092-8674(00)80734-5
   PubMed Web of Science ®Google Scholar
• Nomura M. Ribosomal RNA genes, RNA polymerases, nucleolar structures, and synthesis of rRNA in the yeast Saccharomyces cerevisiae. Cold Spring Harb Symp Quant Biol 2001; 66:555-65; PMID:12762057; https://doi.org/10.1101/sqb.2001.66.555
   PubMedGoogle Scholar
• Kobayashi T, Ganley AR. Recombination regulation by transcriptioninduced cohesin dissociation in rDNA repeats. Science 2005; 309(5740):1581-4; PMID:16141077; https://doi.org/10.1126/science.1116102
   PubMed Web of Science ®Google Scholar
• Huang J, Brito IL, Villén J, Gygi SP, Amon A, Moazed D. Inhibition of homologous recombination by a cohesin-associated clamp complex recruited to the rDNA recombination enhancer. Genes Dev 2006; 20(20):2887-901; PMID:17043313; https://doi.org/10.1101/gad.1472706
   PubMed Web of Science ®Google Scholar
• Wilkins BJ, Rall NA, Ostwal Y, Kruitwagen T, Hiragami-Hamada K, Winkler M, Barral Y, Fischle W, Neumann H. A cascade of histone modifications induces chromatin condensation in mitosis. Science 2014; 343(6166):77-80; PMID:24385627; https://doi.org/10.1126/science.1244508
   PubMed Web of Science ®Google Scholar
• Tsang CK, Li H, Zheng XS. Nutrient starvation promotes condensin loading to maintain rDNA stability. EMBO J 2007; 26(2):448-58; PMID:17203076; https://doi.org/10.1038/sj.emboj.7601488
   PubMed Web of Science ®Google Scholar
• Tollervey D, Lehtonen H, Carmo-Fonseca M, Hurt EC. The small nucleolar RNP protein NOP1 (fibrillarin) is required for pre-rRNA processing in yeast. EMBO J 1991; 10(3):573-83; PMID:1825809
   PubMed Web of Science ®Google Scholar
• Machín F, Torres-Rosell J, Jarmuz A, Aragón L. Spindle-independent condensation-mediated segregation of yeast ribosomal DNA in late anaphase. J Cell Biol 2005; 168(2):209-19; PMID:15657393; https://doi.org/10.1083/jcb.200408087
   PubMed Web of Science ®Google Scholar
• Hartman T, Stead K, Koshland D, Guacci V. Pds5p is an essential chromosomal protein required for both sister chromatid cohesion and condensation in Saccharomyces cerevisiae. J Cell Biol 2000; 151(3):613-26; PMID:11062262; https://doi.org/10.1083/jcb.151.3.613
   PubMed Web of Science ®Google Scholar
• Woodman J, Hoffman M, Dzieciatkowska M, Hansen KC, Megee PC. Phosphorylation of the Scc2 cohesin deposition complex subunit regulates chromosome condensation through cohesin integrity. Mol Biol Cell 2015; 26(21):3754-67 ; PMID:26354421; https://doi.org/10.1091/mbc.E15-03-0165
   PubMed Web of Science ®Google Scholar
• Orgil O, Matityahu A, Eng T, Guacci V, Koshland D, Onn I. A conserved domain in the scc3 subunit of cohesin mediates the interaction with both mcd1 and the cohesin loader complex. PLoS Genet 2015; 11(3):e1005036; PMID:25748820; https://doi.org/10.1371/journal.pgen.1005036
   PubMed Web of Science ®Google Scholar
• Aragon L, Martinez-Perez E, Merkenschlager M. Condensin, cohesin and the control of chromatin states. Curr Opin Genet Dev 2013; 23(2):204-11; PMID:23312842; https://doi.org/10.1016/j.gde.2012.11.004
   PubMed Web of Science ®Google Scholar
• Hirano T. Condensin-Based chromosome organization from bacteria to vertebrates. Cell 2016; 164(5):847-57; PMID:26919425; https://doi.org/10.1016/j.cell.2016.01.033
   PubMed Web of Science ®Google Scholar
• Nomura M. Regulation of ribosome biosynthesis in escherichia coli and saccharomyces cerevisiae: Diversity and common principles. J Bacteriol 1999; 181(22):6857-64; PMID:10559149
   PubMed Web of Science ®Google Scholar
• Russell J, Zomerdijk JC. The RNA polymerase I transcription machinery. Biochem Soc Symp 2006; 73:203-16; PMID:16626300; https://doi.org/10.1042/bss0730203
   PubMedGoogle Scholar
• Salminen A, Kaarniranta K. SIRT1 regulates the ribosomal DNA locus: Epigenetic candles twinkle longevity in the Christmas tree. Biochem Biophys Res Commun 2009; 378(1):6-9; PMID:19010308; https://doi.org/10.1016/j.bbrc.2008.11.023
   PubMed Web of Science ®Google Scholar
• Sáez-Vásquez J, Gadal O. Genome organization and function: A view from yeast and Arabidopsis. Mol Plant 2010; 3(4):678-90; PMID:20601371; https://doi.org/10.1093/mp/ssq034
   PubMed Web of Science ®Google Scholar
• Johzuka K, Horiuchi T. RNA polymerase I transcription obstructs condensin association with 35S rRNA coding regions and can cause contraction of long repeat in Saccharomyces cerevisiae. Genes Cells 2007; 12(6):759-71; PMID:17573776
   PubMed Web of Science ®Google Scholar
• Clemente-Blanco A, Mayán-Santo M., Schneider DA, Machín F, Jarmuz A, Tschochner H., Aragón L. Cdc14 inhibits transcription by RNA polymerase I during anaphase. Nature 2009; 458(7235):219-22; PMID:19158678; https://doi.org/10.1038/nature07652
   PubMed Web of Science ®Google Scholar
• Warner J, Udem S. Temperature sensitive mutations affecting ribosome synthesis in Saccharomyces cerevisiae. J Mol Biol 1972; 65:243-57; PMID:4557193; https://doi.org/10.1016/0022-2836(72)90280-X
   PubMed Web of Science ®Google Scholar
• Cuylen S, Metz J, Hruby A, Haering CH. Entrapment of chromosomes by condensin rings prevents their breakage during cytokinesis. Dev Cell 2013; 27(4):469-78; PMID:24286828; https://doi.org/10.1016/j.devcel.2013.10.018
   PubMed Web of Science ®Google Scholar
• Martin CA, Murray JE, Carroll P, Leitch A, Mackenzie KJ, Halachev M, Fetit AE, Keith C, Bicknell LS, Fluteau A, et al. Mutations in genes encoding condensin complex proteins cause microcephaly through decatenation failure at mitosis. Genes Dev 2016; 30(19):2158-72; PMID:27737959; https://doi.org/10.1101/gad.286351.116
   PubMed Web of Science ®Google Scholar
• Kiraly G, Simonyi AS, Turani M, Juhasz I, Nagy G, Banfalvi G. Micronucleus formation during chromatin condensation and under apoptotic conditions. Apoptosis 2016; 22(2):207-219
   Web of Science ®Google Scholar
• Zhang C, Kuang M, Li M, Feng L, Zhang K, Cheng S. SMC4, which is essentially involved in lung development, is associated with lung adenocarcinoma progression. Sci Rep 2016; 6:34508; PMID:27687868; https://doi.org/10.1038/srep34508
   PubMed Web of Science ®Google Scholar
• Kagami Y, Yoshida K. The functional role for condensin in the regulation of chromosomal organization during the cell cycle. Cell Mol Life Sci 2016; 73(24):4591-98; PMID:27402120; https://doi.org/10.1007/s00018-016-2305-z
   PubMed Web of Science ®Google Scholar
• Uhlmann F. SMC complexes: From DNA to chromosomes. Nat Rev Mol Cell Biol 2016; 17(7):399-412; PMID:27075410; https://doi.org/10.1038/nrm.2016.30
   PubMed Web of Science ®Google Scholar
• Houseley J, Tollervey D. Repeat expansion in the budding yeast ribosomal DNA can occur independently of the canonical homologous recombination machinery. Nucleic Acids Res 2011; 39(20):8778-91; PMID:21768125; https://doi.org/10.1093/nar/gkr589
   PubMed Web of Science ®Google Scholar
• Lees-Miller SP. DNA double strand break repair in mitosis is suppressed by phosphorylation of XRCC4. PLoS Genet 2014; 10(8):e1004598; PMID:25165869; https://doi.org/10.1371/journal.pgen.1004598
   PubMed Web of Science ®Google Scholar
• Mathiasen DP, Lisby M. Cell cycle regulation of homologous recombination in Saccharomyces cerevisiae. FEMS Microbiol Rev 2014; 38(2):172-84; PMID:24483249; https://doi.org/10.1111/1574-6976.12066
   PubMed Web of Science ®Google Scholar
• Lavoie BD, Hogan E, Koshland D. In vivo dissection of the chromosome condensation machinery reversibility of condensation distinguishes contributions of condensin and cohesin. J Cell Biol 2002; 156(5):805-15; PMID:11864994; https://doi.org/10.1083/jcb.200109056
   PubMed Web of Science ®Google Scholar
• Martin RM, Cardoso MC. Chromatin condensation modulates access and binding of nuclear proteins. FASEB J 2010; 24(4):1066-72; PMID:19897663; https://doi.org/10.1096/fj.08-128959
   PubMed Web of Science ®Google Scholar
• Moss T. At the crossroads of growth control; making ribosomal RNA. Curr Opin Genet Dev 2004; 14(2):210-7; PMID:15196469; https://doi.org/10.1016/j.gde.2004.02.005
   PubMed Web of Science ®Google Scholar
• Bi X, Yu Q, Sandmeier JJ, Elizondo S. Regulation of transcriptional silencing in yeast by growth temperature. J Mol Biol 2004; 344(4):893-905; PMID:15544800; https://doi.org/10.1016/j.jmb.2004.10.002
   PubMed Web of Science ®Google Scholar
• Hickman M, McCullough K, Woike A, Raducha-Grace L, Rozario T, Dula ML, Anderson E, Margalit D, Holmes SG. Isolation and characterization of conditional alleles of the yeast SIR2 gene. J Mol Biol 2007; 367(5):1246-57. Epub 2007 Jan 23; PMID:17316680; https://doi.org/10.1016/j.jmb.2007.01.044
   PubMed Web of Science ®Google Scholar
• Li P, Jin H, Yu HG. Condensin suppresses recombination and regulates double-strand break processing at the repetitive ribosomal DNA array to ensure proper chromosome segregation during meiosis in budding yeast. Mol Biol Cell 2014; 25(19):2934-47; PMID:25103240; https://doi.org/10.1091/mbc.E14-05-0957
   PubMed Web of Science ®Google Scholar
• Huang K, Jia J, Wu C, Yao M, Li M, Jin J, Jiang C, Cai Y, Pei D, Pan G, et al. Ribosomal RNA gene transcription mediated by the master genome regulator protein CCCTC-binding Factor (CTCF) is negatively regulated by the condensin complex. J Biol Chem 2013; 288(36):26067-77; PMID:23884423; https://doi.org/10.1074/jbc.M113.486175
   PubMed Web of Science ®Google Scholar
• Lu S, Lee KK, Harris B, Xiong B, Bose T, Saraf A, Hattem G, Florens L, Seidel C, Gerton J. The cohesin acetyltransferase Eco1 coordinates rDNA replication and transcription. EMBO Rep 2014; 15(5):609-17; PMID:24631914; https://doi.org/10.1002/embr.201337974
   PubMed Web of Science ®Google Scholar
• Bose T, Lee KK, Lu S, Xu B, Harris B, Slaughter B, Unruh J, Garrett A, McDowell W, Box A, et al. Cohesin proteins promote ribosomal RNA production and protein translation in yeast and human cells. PLoS Genet 2012; 8(6):e1002749
   PubMed Web of Science ®Google Scholar
• Hirano T. Condensins: Universal organizers of chromosomes with diverse functions. Genes Dev 2012; 26(15):1659-78
   PubMed Web of Science ®Google Scholar
• Csermely P, Kajtár J, Hollósi M, Oikarinen J, Somogyi J. The 90 kDa heat shock protein (hsp90) induces the condensation of the chromatin structure. Biochem Biophys Res Commun 1994; 202(3):1657-63; PMID:8060353; https://doi.org/10.1006/bbrc.1994.2124
   PubMed Web of Science ®Google Scholar
• Asita E, Salehhuddin H. Heat sensitivity between human normal liver (WRL-68) and breast cancer (MDA-MB 231) cell lines. International Journal of Chemical, Environmental & Biological Sciences (IJCEBS) 2013; 1(1):191-195
   Google Scholar
• Longtine MS, McKenzie A 3rd, Demarini DJ, Shah NG, Wach A, Brachat A, Philippsen P, Pringle JR. Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae. Yeast 1998; 14(10):953-61; https://doi.org/10.1002/(SICI)1097-0061(199807)14:10%3c953::AID-YEA293%3e3.0.CO;2-U
   PubMed Web of Science ®Google Scholar
• Rudra S, Skibbens RV. Chl1 DNA helicase regulates Scc2 deposition specifically during DNA-Replication in Saccharomyces cerevisiae. PLoS One 2013; 8(9):e75435; https://doi.org/10.1371/journal.pone.0075435
   PubMed Web of Science ®Google Scholar