References
- He X, Patterson TE, Sazer S. The Schizosaccharomyces pombe spindle checkpoint protein mad2p blocks anaphase and genetically interacts with the anaphase-promoting complex. Proc Natl Acad Sci U S A [Internet]. 1997;94(15):7965–7970. [ cited 2018 Jun 9]. Available from http://www.ncbi.nlm.nih.gov/pubmed/9223296
- Aravind L, Koonin EV. The HORMA domain: a common structural denominator in mitotic checkpoints, chromosome synapsis and DNA repair. Trends Biochem Sci [Internet]. 1998;23:284–286. [ cited 2018 Jun 9]. Available from http://www.ncbi.nlm.nih.gov/pubmed/9757827
- Caryl AP, Armstrong SJ, Jones GH, et al. A homologue of the yeast HOP1 gene is inactivated in the Arabidopsis meiotic mutant asy1. Chromosoma [Internet]. 2000;109:62–71.
- Sanchez-Moran E, Osman K, Higgins JD, et al. ASY1 coordinates early events in the plant meiotic recombination pathway. Cytogenet Genome Res 2008;120:302–312.
- Pangas SA, Yan W, Matzuk MM, et al. Restricted germ cell expression of a gene encoding a novel mammalian HORMA domain-containing protein. Gene Expr Patterns 2004;5:257–263.
- Chen Y-T, Venditti CA, Theiler G, et al. Identification of CT46/HORMAD1, an immunogenic cancer/testis antigen encoding a putative meiosis-related protein. Cancer Immun 2005;5:9.
- Xie W, Yang X, Xu M, et al. Structural insights into the assembly of human translesion polymerase complexes. Protein Cell 2012;3:864–874.
- Liu M, Chen J, Hu L, et al. HORMAD2/CT46.2, a novel cancer/testis gene, is ectopically expressed in lung cancer tissues. Mol Hum Reprod 2012;18:599–604.
- Gan GN, Wittschieben JP, Wittschieben B, et al. DNA polymerase zeta (pol ζ) in higher eukaryotes. Cell Res 2008;18:174–183.
- Baynton K, Bresson-Roy A, Fuchs RPP. Distinct roles for Rev1p and Rev7p during translesion synthesis in Saccharomyces cerevisiae. Mol Microbiol. 1999;34:124–133.
- Murakumo Y. The property of DNA polymerase zeta: REV7 is a putative protein involved in translesion DNA synthesis and cell cycle control. Mutat Res. [Internet]. 2002;510:37—44.
- Wang M, Chen L, Chen S, et al. Alleviation of cadmium-induced root growth inhibition in crop seedlings by nanoparticles. Ecotoxicol Environ Saf. 2012;79:48–54.
- Byrne T, Coleman HG, Cooper JA, et al. The association between MAD2 and prognosis in cancer: a systematic review and meta-analyses. Oncotarget [Internet]. 2017;8;102223–102234. Available from http://www.oncotarget.com/fulltext/18414
- Takahashi S, Sakamoto A, Sato S, et al. Roles of Arabidopsis AtREV1 and AtREV7 in translesion synthesis. Plant Physiol Internet] 2005; 138:870–881. Available from. ;:. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1150404/pdf/pp1380870.pdf%0Ahttp://www.ncbi.nlm.nih.gov/pubmed/15908599
- Caillaud M-C, Paganelli L, Lecomte P, et al. Spindle assembly checkpoint protein dynamics reveal conserved and unsuspected roles in plant cell division. PLoS One [Internet]. 2009;4:e6757.
- Jao CC, Ragusa MJ, Stanley RE, et al. A HORMA domain in Atg13 mediates PI 3-kinase recruitment in autophagy. Pnas [Internet]. 2013;110:5486–5491.
- Suttangkakul A, Li F, Chung T, et al. The ATG1/ATG13 protein kinase complex is both a regulator and a target of autophagic recycling in arabidopsis. Plant Cell [Internet]. 2011;23:3761–3779.
- Nezis IP, Shravage BV, Sagona AP, et al. Autophagic degradation of dBruce controls DNA fragmentation in nurse cells during late Drosophila melanogaster oogenesis. J Cell Biol 2010;190:523–531.
- Tian E, Wang F, Han J, et al. epg-1 functions in autophagy-regulated processes and may encode a highly divergent Atg13 homolog in C. elegans. Autophagy 2009;5:608–615.
- Mercer CA, Kaliappan A, Dennis PB. A novel, human Atg13 binding protein, Atg101, interacts with ULK1 and is essential for macroautophagy. Autophagy 2009;5:649–662.
- Zetka MC, Kawasaki I, Strome S, et al., Synapsis and chiasma formation in Caenorhabditis elegans require HIM-3, a meiotic chromosome core component that functions in chromosome segregation. Genes Dev [Internet]. 1999;13: 2258–2270. [ cited 2018 Jun 10].
- Kim Y, Rosenberg SC, Kugel CL, et al. The chromosome axis controls meiotic events through a hierarchical assembly of HORMA domain proteins. Dev Cell [Internet]. 2014;31:487–502.
- Vader G, Musacchio A. HORMA domains at the heart of meiotic chromosome dynamics. Dev Cell [Internet]. 2014;31:389–391.
- Autret S, Levine A, Holland IB, et al. Cell cycle checkpoints in bacteria. Biochimie [Internet]. 1997;79;549–554. Available from http://www.sciencedirect.com/science/article/pii/S0300908497820020
- Ward D, Newton A. Requirement of topoisomerase IV parC and parE genes for cell cycle progression and developmental regulation in Caulobacter crescentus. Mol Microbiol 1997;26:897–910.
- Britton RA, Powell BS, Dasgupta S, et al. Cell cycle arrest in Era GTPase mutants: A potential growth rate-regulated checkpoint in Escherichia coli. Mol Microbiol. 1998;27:739–750.
- Trusca D, Scott S, Thompson C. Bacterial SOS checkpoint protein SulA inhibits polymerization of purified FtsZ cell division protein. J Bacteriol.1998;180:3946–3953. Available from https://jb.asm.org/content/180/15/3946.long
- Bi E, Lutkenhaus J. FtsZ ring structure associated with division in Escherichia coli. Nature [Internet]. 1991;354:161.
- Lundgren M, Andersson A, Chen L, et al. Three replication origins in Sulfolobus species: synchronous initiation of chromosome replication and asynchronous termination. Proc Natl Acad Sci USA [Internet]. 2004;101;7046–7051. Available from http://www.pnas.org/cgi/content/long/101/18/7046
- Robinson NP, Dionne I, Lundgren M, et al. Identification of two origins of replication in the single chromosome of the archaeon sulfolobus solfataricus. Cell. 2004;116:25–38.
- Samson RY, Obita T, Freund SM, et al. A role for the ESCRT system in cell division in archaea. Sceince 2008;322:1710–1713.
- Fagan M, Saier M. P-type ATPases of eukaryotes and bacteria: sequence analyses and construction of phylogenetic trees. J Mol Evol. 1994;38:57–99.
- Koonin E, Aravind L. Koonin EV, Aravind L. Origin and evolution of eukaryotic apoptosis: the bacterial connection. Cell Death Differ. 2002;9:394–404.
- Leman AR, Noguchi E. Linking chromosome duplication and segregation via sister chromatid cohesion. Methods Mol Biol [Internet]. 2014;1170:75–98.
- Burroughs AM, Zhang D, Schäffer DE, Iyer LMAravind L. Comparative genomic analyses reveal a vast, novel network of nucleotide-centric systems in biological conflicts, immunity and signaling. Nucleic Acids Research. 2015;43:10633–10654. doi:10.1093/nar/gkv1267
- Katoh K, Standley DM. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol. 2013;30:772–780.
- Agarwala R, Barrett T, Beck J, et al. Database resources of the national center for biotechnology information. Nucleic Acids Res. 2018;46:D8–13.
- Kumar S, Stecher G, Tamura K. MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger d atasets. Mol Biol Evol. 2016;33:1870–1874.
- Saitou N, Nei M. The neighbor-joining method - a new method for reconstructing phylogenetic trees. Mol Biol Evol. 1987;4:406–425.
- Felsenstein J, Churchill GA. A hidden markov model approach evolution to variation among sites in rate of evolution. Mol Biol Evol. 1996;13:93–104.
- Finn RD, Attwood TK, Babbitt PC, et al. InterPro in 2017-beyond protein family and domain annotations. Nucleic Acids Res. 2017;45:D190–9.
- de Castro E, Sigrist CJA, Gattiker A, et al. ScanProsite: detection of PROSITE signature matches and ProRule-associated functional and structural residues in proteins. Nucleic Acids Res [Internet]. 2006;34:W362–5.
- Hulo N, Bairoch A, Bulliard V, et al. The 20 years of PROSITE. Nucleic Acids Res. 2008;36:245–249.
- Aravind L, Iyer LM. The SWIRM domain: a conserved module found in chromosomal proteins points to novel chromatin-modifying activities. Genome Biol [Internet]. 2002;3;research0039. Available from http://www.ncbi.nlm.nih.gov/pubmed/12186646
- Popelka H, Klionsky DJ. The molecular mechanism of Atg13 function in autophagy induction: what is hidden behind the data? Autophagy [Internet]. 2017;13:449–451.
- Woese CR. Bacterial evolution. Microbiol Rev. [Internet]. 1987;51;221–271. Available from http://www.nrcresearchpress.com/doi/abs/10.1139/m88-093
- Gallegos M-T, Michán C, Ramos JL. The XylS/AraC family of regulators. Nucleic Acids Res. 1993;21:807–810.
- Chang A, Singh S, Phillips G, et al. Glycosyltransferase structural biology and its role in the design of catalysts for glycosylation. Curr Opin Biotechnol. 2012;22:800–808.
- Stauffer LT, Fogarty SJ, Stauffer GV. Characterization of the Escherichia coli gcv operon. Gene [Internet]. 1994;142;17–22. Available from http://www.sciencedirect.com/science/article/pii/0378111994903492
- Kume A, Koyata H, Sakakibara T, et al. The glycine cleavage system. Molecular cloning of the chicken and human glycine decarboxylase cDNAs and some characteristics involved in the deduced protein structures. J Biol Chem. [Internet]. 1991;266;3323—3329. Available from http://europepmc.org/abstract/MED/1993704
- Okamura-Ikeda K, Ohmura Y, Fujiwara K, et al. Cloning and nucleotide sequence of the gcv operon encoding the Escherichia coli glycine-cleavage system. Eur J Biochem. [Internet]. 1993;216:539—548.
- Rivas-Marín E, Canosa I, Devos DP. Evolutionary cell biology of division mode in the bacterial Planctomycetes-verrucomicrobia-Chlamydiae superphylum. Front Microbiol. 2016;7:1–11.
- Archibald JM. The eocyte hypothesis and the origin of eukaryotic cells. Proc Natl Acad Sci. [Internet]. 2008;105:20049–20050.
- Fox A, Rogers JC, Gilbart J, et al. Muramic acid is not detectable in Chlamydia psittaci or Chlamydia trachomatis by gas chromatography-mass spectrometry. Infect Immun. 1990;58:835–837.
- Makarova KS, Yutin N, Bell SD, et al. Evolution of diverse cell division and vesicle formation systems in archaea. Nat Rev Microbiol. [Internet]. 2010;8:731.
- Mcinerney JO, Martin WF, Koonin EV, et al. Planctomycetes and eukaryotes: A case of analogy not homology. BioEssays. 2011;33:810–817.
- Greub G, Raoult D. Crescent bodies of parachlamydia acanthamoeba and its life cycle within acanthamoeba polyphaga: an electron micrograph study. Appl Environ Microbiol. 2002;68:3076–3084.
- Sittig M, Schlesner H. Chemotaxonomic investigation of various prosthecate and/or budding bacteria. Syst Appl Microbiol [Internet]. 1993;16;92–103. Available from http://www.sciencedirect.com/science/article/pii/S0723202011802535
- Abdelrahman Y, Ouellette SP, Belland RJ, et al. Polarized cell division of chlamydia trachomatis. PLoS Pathog. 2016;12:1–20.
- Fuerst JA, Sagulenko E. Beyond the bacterium: planctomycetes challenge our concepts of microbial structure and function. Nat Rev Microbiol [Internet]. 2011;9:403.
- Mapelli M, Musacchio A. MAD contortions: conformational dimerization boosts spindle checkpoint signaling. Curr Opin Struct Biol [Internet]. 2007;17;716–725. Available from http://www.sciencedirect.com/science/article/pii/S0959440X07001182
- Zhang L-Y, Zhu Z, Yang J. Structural and functional diversification of HORMA domain-containing proteins. J Syst Evol [Internet]. 2015;53:321–329.
- Brinkman FSL, Blanchard JL, Cherkasov A, et al. Evidence that plant-like genes in Chlamydia species reflect an ancestral relationship between Chlamydiaceae, cyanobacteria, and the chloroplast. Genome Res. 2002;12:1159–1167.
- Huang J, Gogarten JP. Did an ancient chlamydial endosymbiosis facilitate the establishment of primary plastids? Genome Biol. 2007;8:1–13.
- McCoy AJ, Adams NE, Hudson AO, et al. L,L-diaminopimelate aminotransferase, a trans-kingdom enzyme shared by Chlamydia and plants for synthesis of diaminopimelate/lysine. Pnas [Internet]. 2006;103;17909–17914. Available from http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=1693846&tool=pmcentrez&rendertype=abstract
- Horn M, Collingro A, Schmitz-Esser S, et al. Illuminating the Evolutionary History of Chlamydiae. [Internet]. Science 2004; 304(5671): 728–730. Available from: http://science.sciencemag.org/content/304/5671/728
- Koonin EV, Yutin N. The dispersed archael eukaryome and the complex archael ancestor of eukaryotes. Cold Spring Harb Perspect Biol. [Internet]. 2014;6:a016188.
- Guy L, Saw JH, Ettema TJG. The archaeal legacy of eukaryotes: A phylogenomic perspective. Cold Spring Harb Perspect Biol. 2014;6:1–16.
- Martin WF, Garg S, Zimorski V. Endosymbiotic theories for eukaryote origin. Philos Trans R Soc B Biol Sci. 2015;370:2014330.