Genetic diversity and population structure of bread wheat genotypes determined via phenotypic and SSR marker analyses under drought-stress conditions

References

• Abouzied, H. M., S. M. Eldemery, and K. F. Abdellatif. 2013. “SSR-based genetic diversity assessment in tetraploid and hexaploid wheat populations.” British Biotechnology Journal 3: 390–404.
   Google Scholar
• Anderson, J. A., G. A. Churchill, J. E. Sutrique, S. D. Tanksley, and M. E. Sorrells. 1993. “Optimizing parental selection for genetic linkage maps.” Genome 36: 181–186.
   PubMed Web of Science ®Google Scholar
• Arora, A., S. Kundu, N. Dilbaghi, I. Sharma, and R. Tiwari. 2014. “Population structure and genetic diversity among Indian wheat varieties using microsatellite (SSR) markers.” Australian Journal of Crop Science 8 (9): 1281–1289.
   Google Scholar
• Asmamaw, M., G. Keneni, and K. Tesfaye. 2019. “Genetic diversity of Ethiopian durum wheat (Triticum durum Desf.) landrace collections as revealed by SSR markers.” Advances in Crop Science and Technology 7 (1): 413. doi:10.4172/2329-8863.1000413.
   Google Scholar
• Ayalew, H., T. Dessalegn, H. Liu, and G. Yan. 2016. “Performance of Ethiopian bread wheat (Triticum aestivum L.) genotypes under contrasting water regimes: potential sources of variability for drought resistance breeding.” Australian Journal of Crop Science 10: 370–376.
   Google Scholar
• Ayed, S., C. Karmous, A. Slim, and A. S. Amara. 2010. “Genetic variation of durum wheat landraces using morphological and protein markers.” African Journal of Biotechnology 9: 8277–8282.
   Google Scholar
• Chen, X., D. Min, T. A. Yasir, and Y. G. Hu. 2012. “Genetic diversity, population structure and linkage disequilibrium in elite Chinese winter wheat investigated with SSR markers.” PLoS ONE 7 (9). doi:e44510.10.1371/journal.phone.0044510.
   Web of Science ®Google Scholar
• Cifci, E. A., and K. Yagdi. 2012. “Study of genetic diversity in wheat (Triticum aestivum) varieties using random amplified polymorphic DNA (RAPD) analysis.” Turkish Journal of Field Crops 17: 91–95.
   Web of Science ®Google Scholar
• Dodig, D., M. Zorić, B. Kobiljski, G. Šurlan-Momirović, and S. A. Quarrie. 2010. “Assessing drought tolerance and regional patterns of genetic diversity among spring and winter bread wheat using simple sequence repeats and phenotypic data.” Crop & Pasture Science 61: 812–824.
   Web of Science ®Google Scholar
• Doyle, J. J., and J. L. Doyle. 1990. “A rapid total DNA preparation procedure for fresh plant tissue.” Focus 12: 13–15.
   Google Scholar
• Earl, D. A., and B. M. von Holdt. 2012. “STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method.” Conservation Genetics Resources 4: 359–361.
   Web of Science ®Google Scholar
• Evanno, G., S. Regnaut, and J. Goudet. 2005. “Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study.” Molecular Ecology 14: 2611–2620.
   PubMed Web of Science ®Google Scholar
• Faheem, M., T. Mahmood, G. Shabbir, N. Akhtar, A. Gul Kazi, and A. M. Kazi. 2015. “Assessment of D-genome based genetic diversity in drought tolerant wheat germplasm.” International Journal of Agriculture and Biology 17: 791–796.
   Web of Science ®Google Scholar
• FAO. 2019. “FAOSTAT.” FAO, Rome. Accessed 21 June 2019. www.fao.org
   Google Scholar
• Fernandez, G. C. J. 1992. “Effective selection criteria for assessing stress tolerance.” In: C. G. Kuo., Ed. Proceedings of the International Symposium on Adaptation of Vegetables and Other Food Crops in Temperature and Water Stress, AVRDC Publications, Tainan, pp257–270.
   Google Scholar
• Fufa, H., P. S. Baenziger, B. S. Beecher, I. Dweikat, R. A. Graybosh, and K. M. Eskridge. 2005. “Comparison of phenotypic and molecular marker-based classifications of hard red winter wheat cultivars.” Euphytica 145: 133–146. doi:10.1007/s10681-005-0626-3.
   Web of Science ®Google Scholar
• Gill, B. S., W. J. Raupp, and B. Friebe. 2014. “Dual threats of imperiled native agroecosystems and climate change to world food security: Genomic perspectives.” Journal of Crop Improvement 28 (1): 88–98. doi:10.1080/15427528.2014.865411.
   Google Scholar
• Govindaraj, M., M. Vetriventhan, and M. Srinivasan. 2015. “Importance of genetic diversity assessment in crop plants and its recent advances: an overview of its analytical perspectives.” Genetic Research International 1: 1–14
   Google Scholar
• Gupta, P. K., H. S. Balyan, K. J. Edwards, P. Isaac, V. Korzun, M. Röder, M. F. Gautier, et al.. 2002. “Genetic mapping of 66 new microsatellite (SSR) loci in bread wheat.” Theoretical and Applied Genetics 105: 413–422.
   PubMed Web of Science ®Google Scholar
• Haile, J. K., K. Hammer, A. Badebo, M. M. Nachit, and M. S. Röder. 2013. “Genetic diversity assessment of Ethiopian tetraploid wheat landraces and improved durum wheat varieties using microsatellites and markers linked with stem rust resistance.” Genetic Resources and Crop Evolution 60 (2): 513–527.
   Web of Science ®Google Scholar
• Henkrar, F., J. El-Haddoury, H. Ouabbou, N. Nsarellah, D. Iraqi, N. Bendaou, and S. M. Udupa. 2015. “Genetic diversity reduction in improved durum wheat cultivars of Morocco as revealed by microsatellite markers.” Scientia Agricola 73 (2): 134–141.
   Web of Science ®Google Scholar
• Holland, J. B. 2007. “Genetic architecture of complex traits in plants.” Current Opinion in Plant Biology 10 (2): 156–161.
   PubMed Web of Science ®Google Scholar
• Jamalirad, S., S. A. Mohammadi, and M. Toorchi. 2012. “Assessing genetic diversity in a set of wheat (Triticum aestivum) genotypes using microsatellite markers to improve the yellow rust resistant breeding programs.” African Journal of Agricultural Research 7 (48): 6447–6455.
   Google Scholar
• Keneni, G., E. Bekele, M. Imtiaz, and K. Dagne. 2012. “Genetic Vulnerability of Modern Crop Cultivars: Causes, Mechanism and Remedies.” International Journal of Plant Research 2: 69–79. doi:10.5923/j.plant.20120203.05.
   Google Scholar
• Khaled, F. M. S., M. S. Röder, and A. Börner. 2015. “Assessing genetic diversity of Egyptian hexaploid wheat (Triticum aestivum L.) using microsatellite markers.” Genetic Resources and Crop Evolution 62: 377–385.
   Web of Science ®Google Scholar
• Khalil, M. U., Z. Akram, M. Rana, Z. H. Shah, and Z. Ahmed. 2019. “Molecular marker assisted selection of promising wheat genotypes for high grain protein content.” Advances in Plants and Agriculture Research 9 (2): 348‒353. doi:10.15406/apar.2019.09.00447.
   Google Scholar
• Kumar, M., V. R. Sharma, V. Kumar, U. Sirohi, V. Chaudhary, S. Sharma, G. Saripalli, R. K. Naresh, H. K. Yadav, and S. Sharma. 2019. “Genetic diversity and population structure analysis of Indian garlic (Allium sativum L.) collection using SSR markers.” Physiology and Molecular Biology of Plants 25: 377–386.
   PubMed Web of Science ®Google Scholar
• Laido, G., G. Mangini, F. Taranto, A. Gadaleta, A. Blanco, L. Cattivelli, D. Marone, A. M. Mastrangelo, R. Papa, and P. De Vita. 2013. “Genetic diversity and population structure of tetraploid wheats (Triticum turgidum L.) Estimated by SSR, DArT and Pedigree data.” PLoS ONE 8 (6): e67280. doi:10.1371/journal.pone.0067280.
   PubMed Web of Science ®Google Scholar
• Malik, R., R. Tiwari, A. Arora, P. Kumar, S. Sheoran, P. Sharma, R. Singh, V. Tiwari, and I. Sharma. 2013. “Genotypic characterization of elite Indian wheat genotypes using molecular markers and their pedigree analysis.” Australian Journal of Crop Science 7 (5): 561.
   Google Scholar
• Mandoulakani, B. A., A. A. Shahnejat-Bushehri, B. E. S. Tabatabaei, S. Torabi, and A. M. Hajiaba. 2010. “Genetic Diversity among wheat cultivars using molecular markers.” Journal of Crop Improvement 24: 299–309.
   Google Scholar
• Mantel, N. 1967. “The detection of disease clustering and a generalized regression approach.” Cancer Research 27: 209–220.
   PubMed Web of Science ®Google Scholar
• Meti, N., K. C. Samal, D. N. Bastia, and G. R. Rout. 2013. “Genetic diversity analysis in aromatic rice genotypes using microsatellite based simple sequence repeats (SSR) marker.” African Journal of Biotechnology 12(27): 4238–4250
   Google Scholar
• Mulualem, T., F. Mekbib, H. Shimelis, E. Gebre, and B. Amelework. 2018. “Genetic diversity of yam (Dioscorea spp.) landrace collections from Ethiopia using simple sequence repeat markers.” Australian Journal of Crop Science 12 (8): 1223–1230.
   Google Scholar
• Mwadzingeni, L., H. Shimelis, T. Tsilo, and S. Tesfay. 2016. “Screening of bread wheat genotypes for drought tolerance using phenotypic and proline analyses.” Frontiers in Plant Science 7: 1–12.
   PubMed Web of Science ®Google Scholar
• Negassa, A., B. Shiferaw, J. Koo, K. Sonder, M. Smale, H. J. Braun, S. Gbegbelegbe, et al.. 2013. “The Potential for Wheat Production in Africa: Analysis of Biophysical Suitability and Economic Profitability.” CIMMYT, Mexico, D.F.
   Google Scholar
• Peakall, R., and P. E. Smouse. 2012. “Genetic analysis in Excel. Population genetic software for teaching and research an update.” Bioinformatics 28: 2537–2539.
   PubMed Web of Science ®Google Scholar
• Perrier, X., and J. Jacquemoud-Collet. 2006. “DARwin: Dissimilarity Analysis and Representation for Windows; Version 5.0.158.” CIRAD: Montpellier, France.
   Google Scholar
• Pfeifer, M., K. G. Kugler, S. R. Sandve, B. Zhan, H. Rudi, T. R. Hvidsten, K. F. Mayer, and O. A. Olsen. 2014. “International Wheat Genome Sequencing Consortium: Genome interplay in the grain transcriptome of hexaploid bread wheat.” Science 345 (6194): 1250091.
   PubMed Web of Science ®Google Scholar
• Poudel, M. R., S. K. Ghimire, M. P. Pandey, K. H. Dhakal, D. B. Thapa, and D. K. Khadka. 2019. “Assessing genetic diversity for drought and heat stress tolerance of Nepalese wheat genotypes by SSR markers.” Eurasian Journal of BioSciences 13 (2): 941–948.
   Google Scholar
• Pritchard, J., M. Stephens, N. Rosenberg, and P. Donnelly. 2000. “Association mapping in structured populations.” American Journal of Human Genetics 67: 170–180.
   PubMed Web of Science ®Google Scholar
• Reyes-Valdés, M. H., J. Burgueño, S. Singh, O. Martínez, and C. P. Sansaloni. 2018. “An informational view of accession rarity and allele specificity in germplasm banks for management and conservation.” PLoS ONE 13: 2.
   Web of Science ®Google Scholar
• Rӧder, M. S., V. Korzun, K. Wendehake, J. Plaschke, M. H. Tixier, P. Leroy, and M. W. Ganal. 1998. “A microsatellite map of wheat.” Genetics 149: 2007–2023.
   PubMed Web of Science ®Google Scholar
• Sackton, T. B., and D. L. Hartl. 2016. “Genotypic context and epistasis in individuals and populations.” Cell 166 (2): 279–287.
   PubMed Web of Science ®Google Scholar
• Salem, K. F. M., and A. Sallam. 2016. “Analysis of population structure and genetic diversity of Egyptian and exotic rice (Oryza sativa L.) genotypes.” Comptes rendus biologies 339(1): 1–9. doi:10.1016/j.crvi.2015.11.003
   PubMed Web of Science ®Google Scholar
• SAS Institute. 2012. SAS/IML 9.3 User’s Guide. Cary, NC: SAS Institute Inc.
   Google Scholar
• Semahegn, Y., H. Shimelis, M. Laing, and I. Mathew. 2020. “Evaluation of bread wheat (Triticum aestivum L.) genotypes for yield and related traits under drought stress conditions.” Acta Agriculturae Scandinavica, Section B — Soil & Plant Science. doi:10.1080/09064710.2020.1767802.
   Google Scholar
• Shavrukov, Y., A. Kurishbayev, S. Jatayev, V. Shvidchenko, L. Zotova, F. Koekemoer, S. de Groot, K. Soole, and P. Langridge. 2017. “Early Flowering as a Drought Escape Mechanism in Plants: How Can It Aid Wheat Production?.” Frontiers in Plant Science 8: 1950. doi:10.3389/fpls.2017.01950.
   PubMed Web of Science ®Google Scholar
• Slim, A., L. Piarulli, H. C. Kourda, M. Rouaissi, C. Robbana, R. Chaabane, D. Pignone, C. Montemurro, and G. Mangini. 2019. “Genetic structure analysis of a collection of Tunisian durum wheat germplasm.” International Journal of Molecular Science 20: 3362. doi:10.3390/ijms20133362.
   Web of Science ®Google Scholar
• Sönmezoğlu, A. Ö., and B. Terzi. 2018. “Characterization of some bread wheat genotypes using molecular markers for drought tolerance.” Physiology and Molecular Biology of Plants 24 (1): 159–166.
   PubMed Web of Science ®Google Scholar
• Tadesse, W., Z. Bishaw, and S. Assefa. 2019. “Wheat production and breeding in sub-Saharan Africa: Challenges and opportunities in the face of climate change.” International Journal of Climate Change Strategies and Management 11 (5): 696–715.
   Web of Science ®Google Scholar
• Tékeu, H., E. M. L. Ngonkeu, F. P. Djocgoué, A. Ellis, V. Lendzemo, L. Springfield, L. Moulin, et al.. 2017. “Genetic diversity of Cameroonian bread wheat (Triticum aestivum L.) cultivars revealed by microsatellite markers.” African Journal of Biotechnology 16 (36): 1832–1839.
   Google Scholar
• van de Wouw, M. J., C. Kik, T. J. L. van Hintum, R. van Treuren, and L. Visser. 2009. “Genetic erosion in crops: concept, research results and challenges.” Plant Genetic Resources: Characterization and Utilization 8: 1–15. doi:10.1017/S1479262109990062.
   Web of Science ®Google Scholar
• Verma, H., J. L. Borah, and R. N. Sarma. 2019. “Variability assessment for root and drought tolerance traits and genetic diversity analysis of rice germplasm using SSR markers.” Scientific Reports 9: 16513. doi:10.1038/s41598-019-52884-1.
   PubMed Web of Science ®Google Scholar