Genome-Wide Analysis and Polymorphism Evaluation of Microsatellites Involved in Photoperiodic Flowering-time Genes in Kenaf (Hibiscus Cannabinus L.)

References

• Cavagnaro, P. F., D. A. Senalik, L. Yang, P. W. Simon, T. T. Harkins, C. D. Kodira, S. Huang, and Y. Weng. 2010. Genome-wide characterization of simple sequence repeats in cucumber (Cucumis sativus L.). BMC Genomics 11 (1):569. doi:10.1186/1471-2164-11-569.
   PubMed Web of Science ®Google Scholar
• Deng, P., M. Wang, K. Feng, L. Cui, W. Tong, W. Song, and X. Nie. 2016. Genome-wide characterization of microsatellites in triticeae species: abundance, distribution and evolution. Scientific Reports 6:32224. doi:10.1038/srep32224.
   PubMed Web of Science ®Google Scholar
• Fang, J. P., C. Y. Miao, R. K. Chen, and R. Ming. 2016. Genome-wide comparative analysis of microsatellites in pineapple. Tropical Plant Biology 9 (3):117–135. doi:10.1007/s12042-016-9163-6.
   Web of Science ®Google Scholar
• Huo, N., G. R. Lazo, J. P. Vogel, F. M. You, Y. Ma, D. M. Hayden, and D. Coleman-Derr. 2008. The nuclear genome of brachypodium distachyon: analysis of BAC end sequences. Functional & Integrative Genomics 8 (2):135–147. doi:10.1007/s10142-007-0062-7.
   PubMed Web of Science ®Google Scholar
• Jin, G. R., X. An, X. H. Luo, C. L. Chen, W. L. Li, P. F. Li, D. Q. Tian, B. Wang, W. Q. Wu, and G. L. Zhu. 2018. The EST-SSR markers of the response gene of kenaf under drought stress. Molecular Plant Breeding 16 (14):4735–4742. doi:10.13271/j.mpb.016.004735.
   Google Scholar
• Kantety, R. V., M. L. Rota, D. E. Matthews, and M. E. Sorrells. 2002. Data mining for simple sequence repeats in expressed sequence tags from barley, maize, rice, sorghum and wheat. Plant Molecular Biology 48 (5–6):501–510. doi:10.1023/a:1014875206165.
   PubMed Web of Science ®Google Scholar
• Liu, K., and S. V. Muse. 2005. PowerMarker: An integrated analysis environment for genetic marker analysis. Bioinformatics 21 (9):2128–2129. doi:10.1093/bioinformatics/bti282.
   PubMed Web of Science ®Google Scholar
• Liu, S. A., X. G. Yin, J. N. Lu, C. Liu, C. Bi, H. B. Zhu, and Y. Z. Shi. 2016. The first genetic linkage map of Ricinus communis L. based on genome-SSR markers. Industrial Crops and Products 89:103–08. doi:10.1016/j.indcrop.2016.04.063.
   Web of Science ®Google Scholar
• Liu, S. R., Y. L. An, F. D. Li, S. J. Li, L. L. Liu, Q. Y. Zhou, S. Q. Zhao, and C. L. Wei. 2018. Genome-wide identification of simple sequence repeats and development of polymorphic SSR markers for genetic studies in tea plant (Camellia sinensis). Molecular Breeding 38 (5). doi: 10.1007/s11032-018-0824-z.
   Web of Science ®Google Scholar
• Luo, J., M. Hao, L. Zhang, J. Chen, L. Zhang, Z. Yuan, and Z. Yan. 2012. Microsatellite mutation rate during allohexaploidization of newly resynthesized wheat. International Journal of Molecular Sciences 13 (10):12533–43. doi:10.3390/ijms131012533.
   PubMed Web of Science ®Google Scholar
• Miao, L. X., X. F. Yang, Y. C. Zhang, Y. Y. Shen, X. B. Li, and G. H. Jiang. 2021. Development of genomic SSR and application in strawberry. Molecular Plant Breeding 19 (4): 1210-1222. doi:10.13271/j.mpb.019.001210
   Google Scholar
• Morgante, M., M. Hanafey, and W. Powell. 2002. Microsatellites are preferentially associated with nonrepetitive DNA in plant genomes. Nature Genetics 30 (2):194–200. doi:10.1038/ng822.
   PubMed Web of Science ®Google Scholar
• Patanè, C., and O. Sortino. 2010. Seed yield in kenaf (Hibiscus cannabinus L.) as affected by sowing time in South Italy. Industrial Crops and Products 32 (3):381–388. doi:10.1016/j.indcrop.2010.06.002.
   Web of Science ®Google Scholar
• Schiessl, S., B. Huettel, D. Kuehn, R. Reinhardt, and R. Snowdon. 2017. Post-polyploidisation morphotype diversification associates with gene copy number variation. Scientific Reports 7:41845. doi:10.1038/srep41845.
   PubMed Web of Science ®Google Scholar
• Tribhuvan, K. U., S. V. Mithra, P. Sharma, A. Das, K. Kumar, A. Tyagi, and A. U. Solanke. 2019. Identification of genomic SSRs in cluster bean (Cyamopsis tetragonoloba) and demonstration of their utility in genetic diversity analysis. Industrial Crops and Products 133:221–231. doi:10.1016/j.indcrop.2019.03.028.
   Web of Science ®Google Scholar
• Wan, X. B., D. X. Li, Y. Xu, J. T. Xu, L. L. Zhang, L. M. Zhang, L. H. Lin, J. M. Qi, and L. W. Zhang. 2017. Development and polymorphism evaluation of EST-SSR markers in kenaf. Acta Agronomica Sinica 43 (8):1170. doi:10.3724/sp.j.1006.2017.01170.
   Google Scholar
• Wan, X. B., J. T. Xu, D. X. Li, L. H. Lin, J. M. Qi, and L. W. Zhang. 2018. Construction of kenaf microsatellite DNA marker fingerprint. Journal of Plant Genetic Resources 19 (1):87–95. doi:10.13430/j.cnki.jpgr.2018.01.010.
   Google Scholar
• Wang, J. P., C.-X. Chen, J. K. Na, Q. Y. Yu, S. B. Hou, R. E. Paull, P. H. Moore, M. Alam, and R. Ming. 2008. Genome-wide comparative analyses of microsatellites in papaya. Tropical Plant Biol 1 (3–4):278–292. doi:10.1007/s12042-008-9024-z.
   Google Scholar
• Wang, Q., L. Fang, J. Chen, Y. Hu, Z. Si, S. Wang, L. Chang, W. Guo, and T. Zhang. 2015. Genome-wide mining, characterization, and development of microsatellite markers in Gossypium species. Scientific Reports 5:10638. doi:10.1038/srep10638.
   PubMed Web of Science ®Google Scholar
• Xiong, H. 2008. Breeding Sciences of Bast and Leaf Fiber Crops. Beijing: China Agricultural Science and Technology Press.
   Google Scholar
• Yao, J. Y., L. W. Zhang, J. Zhao, Y. Xu, J. M. Qi, and L. M. Zhang. 2019. Evaluation and characteristic analysis of SSRs from the whole genome of jute (Corchorus capsularis). Acta Agronomica Sinica 45 (1):10. doi:10.3724/sp.j.1006.2019.84072.
   Google Scholar
• Zhang, L. W., Y. Xu, X. T. Zhang, X. K. Ma, L. L. Zhang, Z. Y. Liao, and Q. Zhang. 2020. The genome of kenaf (Hibiscus cannabinus L.) provides insights into bast fibre and leaf shape biogenesis. Plant Biotechnology Journal 18 (8):1796–1809. doi:10.1111/pbi.13341.
   PubMed Web of Science ®Google Scholar
• Zhang, L. W., Z. M. Huang, X. B. Wan, L. H. Lin, J. T. Xu, A. F. Tao, P. P. Fang, and J. M. Qi. 2014a. Identification and genetic analysis of photoperiod insensitive materials in kenaf (Hibiscus cannabinus). Acta Agronomica Sinica 40 (12):2098. doi:10.3724/sp.j.1006.2014.02098.
   Google Scholar
• Zhang, Y. N., Y. P. Zhou, Q. H. Chen, X. L. Huang, and C. E. Tian. 2014b. Molecular basis of flowering time regulation in arabidopsis. Chinese Bulletin of Botany 49 (4):469–482. doi:10.3724/SP.J.1259.2014.00469.
   Google Scholar
• Zhao, T. M., S. G. Zheng, Y. D. Hu, R. X. Zhao, H. J. Li, X. Q. Zhang, and Z. Chun. 2019. Classification of interspecific and intraspecific species by genome-wide SSR markers on dendrobium. South African Journal of Botany 127:136–146. doi:10.1016/j.sajb.2019.08.051.
   Web of Science ®Google Scholar