Identification of regulatory pathways of miRna and phasiRna related to flax lignan synthesis

References

• Adenot, X., T. Elmayan, D. Lauressergues, S. Boutet, N. Bouché, V. Gasciolli, and H. Vaucheret. 2006. DRB4-dependent TAS3 trans-acting siRnas control leaf morphology through AGO7. Curr Biology 16:927–11. doi:10.1016/j.cub.2006.03.035.
   PubMed Web of Science ®Google Scholar
• Blitz, C. L., S. P. Murphy, and D. L. M. Au. 2007. Adding lignan values to a food composition database. Journal of Food Composition and Analysis 20:99–105. doi:10.1016/j.jfca.2006.05.006.
   Web of Science ®Google Scholar
• Charlet, S., L. Bensaddek, S. Raynaud, F. Gillet, F. Mesnard, and M. A. Fliniaux. 2002. An HPLC procedure for the quantification of anhydrosecoisolariciresinol. Application to the evaluation of flax lignan content. Plant Physiology & Biochemistry 40:225–29. doi:10.1016/S0981-9428(02)01368-2.
   Web of Science ®Google Scholar
• Dobrowolska, K., and B. Regulska-Ilow. 2021. The legitimacy of using dietary supplement diglycoside secoisolariciresinol (SDG) from flaxseed in cancer. Roczniki Panstwowego Zakladu Higieny 72 (1):9–20. doi:10.32394/rpzh.2021.0144.
   PubMedGoogle Scholar
• Ezzat, S. M., S. A. Shouman, A. Elkhoely, Y. M. Attia, M. S. Elsesy, A. S. El Senousy, M. A. Choucry, S. H. El Gayed, A. A. El Sayed, E. A. Sattar, et al. 2018. Anticancer potentiality of lignan rich fraction of six Flaxseed cultivars. Scientific Reports 8 (1):544. doi:10.1038/s41598-017-18944-0.
   PubMed Web of Science ®Google Scholar
• Fahlgren, N., T. A. Montgomery, M. D. Howell, E. Allen, J. C. Carrington, A. L. Alexander, and J. C. Carrington. 2006. Regulation of AUXIN RESPONSE FACTOR3 by TAS3 ta-siRNA affects developmental timing and patterning in Arabidopsis. Curr Biology 16:939–44. doi:10.1016/j.cub.2006.03.065.
   PubMed Web of Science ®Google Scholar
• Fei, Q., R. Xia, and B. C. Meyers. 2013. Phased, secondary, small interfering RNAs in posttranscriptional regulatory networks. The Plant Cell 25 (7):2400–15. doi:10.1105/tpc.113.114652.
   PubMed Web of Science ®Google Scholar
• Ghose, K., K. Selvaraj, J. McCallum, C. W. Kirby, M. Sweeney-Nixon, S. J. Cloutier, M. Deyholos, R. Datla, and B. Fofana. 2014. Identification and functional characterization of a flax UDP-glycosyltransferase glucosylating secoisolariciresinol (SECO) into secoisolariciresinol monoglucoside (SMG) and diglucoside (SDG). BMC Plant Biology 14 (1):1–17. doi:10.1186/1471-2229-14-82.
   Google Scholar
• Kato, N., and M. Esaka. 2000. Expansion of transgenic tobacco protoplasts expressing pumpkin ascorbate oxidase is more rapid than that of wide-type protoplasts. Planta 210 (6):1018–22. doi:10.1007/s004250050712.
   PubMed Web of Science ®Google Scholar
• Kiely, M., M. Faughnan, K. Wähälä, H. Brants, and A. Mulligan. 2003. Phyto-oestrogen levels in foods: The design and construction of the VENUS database. The British Journal of Nutrition 89 (1):S19–23. doi:10.1079/BJN2002792.
   PubMedGoogle Scholar
• Kou, S. J., X. M. Wu, Z. Liu, Y. L. Liu, Q. Xu, and W. W. Guo. 2012. Selection and validation of suitable reference genes for miRNA expression normalization by quantitative RT-PCR in citrus somatic embryogenic and adult tissues. Plant Cell Reports 31:2151–63. doi:10.1007/s00299-012-1325-x.
   PubMed Web of Science ®Google Scholar
• Li, S., J. Liu, Z. Liu, X. Li, F. Wu, and Y. He. 2014. HEAT-INDUCED TAS1 TARGET1 mediates thermotolerance via HEAT STRESS TRANSCRIPTION FACTOR A1a–directed pathways in Arabidopsis. The Plant Cell 26:1764–80. doi:10.1105/tpc.114.124883.
   PubMed Web of Science ®Google Scholar
• Livak, K. J., and T. D. Schmittgen. 2001. Analysis of relative gene expression data using real-time quantitative PCR and the 2(-delta delta C(T)) method. Methods 25 (4):402–08. doi:10.1006/meth.2001.1262.
   PubMed Web of Science ®Google Scholar
• Mao, Y., Y. Ma, T. Chen, X. H. Ma, Y. Q. Xu, J. L. Bu, Q. S. Li, B. L. Jin, Y. N. Wang, Y. Li, et al. 2020. Functional integration of two cyp450 genes involved in biosynthesis of tanshinones for improved diterpenoid production by synthetic biology. ACS Synthetic Biology 9 (7):1763–70. doi:10.1021/acssynbio.0c00136.
   PubMed Web of Science ®Google Scholar
• Mattinen, M. L., P. Maijala, P. Nousiainen, A. Smeds, J. Kontro, J. Sipilä, T. Tamminen, S. Willför, and L. Viikari. 2011. Oxidation of lignans and lignin model compounds by laccase in aqueous solvent systems-sciencedirect. Journal of Molecular Catalysis B-Enzymatic 72 (3–4):122–29. doi:10.1016/j.molcatb.2011.05.009.
   Google Scholar
• Meagher, L. P., and G. R. Beecher. 2000. Assessment of data on the lignan content of foods. Journal of Food Composition and Analysis 13 (6):935–47. doi:10.1006/jfca.2000.0932.
   Google Scholar
• Rock, C. D. 2013. Trans-acting small interfering RNA4: Key to nutraceutical synthesis in grape development? Trends Plant Science 18:601–10. doi:10.1016/j.tplants.2013.07.006.
   PubMed Web of Science ®Google Scholar
• Tranchimand, S., T. Tron, C. Gaudin, and G. Iacazio. 2006. Synthesis of bis-lactone lignans through laccase catalysis. Journal of Molecular Catalysis B-Enzymatic 42 (1–2):27–31. doi:10.1016/j.molcatb.2006.06.003.
   Google Scholar
• Tu, L., P. Su, Z. Zhang, L. Gao, W. Gao, T. Hu, J. Zhou, Y. Zhang, Y. Zhao, Y. Liu, et al. 2020. Genome of tripterygium wilfordii and identification of cytochrome p450 involved in triptolide biosynthesis. Nature Communications 11 (1):971. doi:10.1038/s41467-020-14776-1.
   PubMed Web of Science ®Google Scholar
• Vaucheret, H., F. Vazquez, P. Crete, and D. P. Bartel. 2004. The action of ARGONAUTE1 in the miRNA pathway and its regulation by the miRNA pathway are crucial for plant development. Genes & Development 18 (10):1187–97. doi:10.1101/gad.1201404.
   PubMed Web of Science ®Google Scholar
• Wang, Z. W., N. Hobson, L. Galindo, S. L. Zhu, M. K. Deyholos, J. McDill, L. Yang, S. Hawkins, G. Neutelings, R. Datla, et al. 2012. The genome of flax (Linum usitatissimum) assembled de novo from short shotgun sequence reads. The Plant Journal 72:461–73. doi:10.1111/j.1365-313X.2012.05093.x.
   PubMed Web of Science ®Google Scholar
• Xie, D. W., Y. Yu, Z. G. Dai, J. Sun, and J. G. Su. 2021. Identification and characterization of miRnas and target genes in developing flax seeds by multigroup analysis. Biotechnology & Biotechnological Equipment 35 (1):538–50. doi:10.1080/13102818.2021.1903337.
   Web of Science ®Google Scholar
• Yaish, M. W. F., M. S. Peng, and S. J. Rothstein. 2009. AtMBD9 modulates Arabidopsis development through the dual epigenetic pathways of DNA methylation and histone acetylation. The Plant Journal 59 (1):123–35. doi:10.1111/j.1365-313X.2009.03860.x.
   PubMed Web of Science ®Google Scholar
• Ye, C. Y., H. Xu, E. Shen, Y. Liu, Y. Wang, Y. Shen, J. Qiu, Q. H. Zhu, and L. Fan. 2014. Genome-wide identification of non-coding RNAs interacted with microRnas in soybean. Frontiers in Plant Science 5:743. doi:10.3389/fpls.2014.00743.
   PubMed Web of Science ®Google Scholar
• Yonekura-Sakakibara, K., M. Yamamura, F. Matsuda, E. Ono, R. Nakabayashi, S. Sugawara, T. Mori, Y. Tobimatsu, T. Umezawa, and K. Saito. 2020. Seed-coat protective neolignans are produced by the dirigent protein AtDP1 and the laccase AtLAC5 in Arabidopsis. The Plant Cell 33 (1):129–52. doi:10.1093/plcell/koaa014.
   Web of Science ®Google Scholar
• Zhai, J., D. H. Jeong, E. De Paoli, S. Park, B. D. Rosen, Y. Li, A. J. Gonzalez, Z. Yan, S. L. Kitto, M. A. Grusak, et al. 2011. MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRnas. Genes & Development 25:2540–53. doi:10.1101/gad.177527.111.
   PubMed Web of Science ®Google Scholar
• Zhou, Z., Q. Li, L. Xiao, Y. Wang, L. Zhang, Q. Bu, Y. Xiao, K. Hao, M. Guo, W. Chen, et al. 2021. Multiplexed CRISPR/Cas9-mediated knockout of laccase genes in salvia miltiorrhiza revealed their roles in growth, development, and metabolism. Frontiers in Plant Science 12:647768. doi:10.3389/fpls.2021.647768.
   PubMed Web of Science ®Google Scholar