Viral interference of the bacterial RNA metabolism machinery

References

• Wagemans J & Lavigne R. In Phages and their hosts: a web of interactions - applications to drug design. In Hyman P & Abedon ST, editors. Bacteriophages in health and disease Ashland (USA): Cabi; 2012. p.119-33.
   Google Scholar
• Häuser R, Blasche S, Dokland T, Haggård-Ljungquist E, von Brunn A, Salas M, Casjens S, Molineux I & Uetz P. Bacteriophage protein–protein interactions. Protein–protein interactions. Adv Virus Res 2012; 83:219-98; PMID:22748812; http://dx.doi.org/10.1016/B978-0-12-394438-2.00006-2
   PubMed Web of Science ®Google Scholar
• Liu J, Dehbi M, Moeck G, Arhin F, Bauda P, Bergeron D, Callejo M, Ferretti V, Ha N, Kwan T, et al. Antimicrobial drug discovery through bacteriophage genomics. Nat Biotechnol 2004; 22(2):185-91; PMID:14716317; http://dx.doi.org/10.1038/nbt932
   PubMed Web of Science ®Google Scholar
• Yang H, Ma Y, Wang Y, Yang H, Shen W, Chen X. Transcription regulation mechanisms of bacteriophages: recent advances and future prospects. Bioengineered 2014; 5(5):300-4; PMID:25482231; http://dx.doi.org/10.4161/bioe.32110
   PubMed Web of Science ®Google Scholar
• Bandyra KJ, Bouvier M, Carpousis AJ, Luisi BF. The social fabric of the RNA degradosome. Biochimica et Biophysica Acta 2013; 1829(6–7):514-22; PMID:23459248; http://dx.doi.org/10.1016/j.bbagrm.2013.02.011
   PubMed Web of Science ®Google Scholar
• Deutscher MP. Degradation of RNA in bacteria: comparison of mRNA and stable RNA. Nucleic Acids Res 2006; 34 (2): 659-66; PMID:16452296; http://dx.doi.org/10.1093/nar/gkj472
   PubMed Web of Science ®Google Scholar
• Bandyra KJ, Luisi BF. Licensing and due process in the turnover of bacterial RNA. RNA Biol 2013; 10(4):627-35; PMID:23580162; http://dx.doi.org/10.4161/rna.24393
   PubMed Web of Science ®Google Scholar
• Marchand I, Nicholson AW, Dreyfus M. Bacteriophage T7 protein kinase phosphorylates RNase E and stabilizes mRNAs synthesized by T7 RNA polymerase. Mol Microbiol 2001; 42:767-76; PMID:11722741; http://dx.doi.org/10.1046/j.1365-2958.2001.02668.x
   PubMed Web of Science ®Google Scholar
• Qi D, Alawneh AM, Yonesaki T & Otsuka Y. Rapid degradation of host mRNAs by stimulation of RNase E activity by Srd of bacteriophage T4. Genetics 2015; 201(3):977-87; PMID:26323881; http://dx.doi.org/10.1534/genetics.115.180364
   PubMed Web of Science ®Google Scholar
• Van den Bossche A, Hardwick SW, Ceyssens P-J, Hendrix H, Voet M, Dendooven T, Bandyra KJ, De Maeyer M, Aertsen A, Noben J-P, et al. Structural elucidation of a novel mechanism for the bacteriophage-based inhibition of the RNA degradosome. eLife 2016; 5:e16413; PMID:27447594; http://dx.doi.org/10.7554/eLife.16413
   PubMedGoogle Scholar
• Van den Bossche A, Ceyssens P-J, De Smet J, Hendrix H, Bellon H, Leimer N, Wagemans J, Delattre A-S, Cenens W, Aersten A, et al. Systematic identification of hypothetical bacteriophage proteins targeting key protein complexes of pseudomonas aeruginosa. J Proteome Res 2014; 13(10):4446-56; PMID:25185497; http://dx.doi.org/10.1021/pr500796n
   PubMed Web of Science ®Google Scholar
• Górna MW, Carpousis AJ, Luisi BF. From conformational chaos to robust regulation: the structure and function of the multi-enzyme RNA degradosome. Q Rev Biophys 2012; 45(2):105-45; PMID:22169164; http://dx.doi.org/10.1017/S003358351100014X
   PubMed Web of Science ®Google Scholar
• Miczak A, Kaberdin VR, Wei CL, Lin-Chao S. Proteins associated with RNase E in a multicomponent ribonucleolytic complex. Proceedings of the National Academy of Sciences of the United States of America 1996; 93(9):3865-3869.
   PubMed Web of Science ®Google Scholar
• Stover CK, Pham XQ, Erwin AL, Mizoguchi SD, Warrener P, Hickey MJ, Brinkman FS, Hufnagle WO, Kowalik DJ, Lagrou M, et al. Complete genome sequence of Pseudomonas aeruginosa PAO1, an opportunistic pathogen. Nature 2000; 406(6799):959-64; PMID:10984043; http://dx.doi.org/406(6799):959-64
   PubMed Web of Science ®Google Scholar
• Ceyssens P-J, Minakhin L, Van den Bossche A, Yakunina M, Klimuk E, Blasdel B, De Smet J, Noben JP, Bläsi U, Severinov K, et al. Development of giant bacteriophage φKZ is independent of the host transcription apparatus. Hutt-Fletcher L, ed. Journal of Virology 2014; 88(18):10501-10; PMID:24965474; http://dx.doi.org/10.1128/JVI.01347-14
   PubMed Web of Science ®Google Scholar
• Krylov V, Pleteneva E, Bourkaltseva M, Shaburova O, Volckaert G, Sykilinda N, Kurochkina L & Mesyanzhinov V. Myoviridae bacteriophages of Pseudomonas aeruginosa: a long and complex evolutionary pathway. Research in Microbiology 2003; 154(4):269-275. doi: 10.1016/S0923-2508(03)00070-6
   PubMed Web of Science ®Google Scholar
• Gao J, Lee K, Zhao M, Qiu J, Zhan X, Saxena A, Moore CJ, Cohen SN, Georgiou G. Differential modulation of E. coli mRNA abundance by inhibitory proteins that alter the composition of the degradosome. Molecularl 2006; 61(2):394-406; PMID:16771842; http://dx.doi.org/10.1111/j.1365-2958.2006.05246.x
   Google Scholar
• Walkinshaw MD, Taylor P, Sturrock SS, Atanasiu C, Berge T, Henderson RM, Edwardson JM & Dryden DTF. Structure of Ocr from Bacteriophage T7, a protein that mimics B-form DNA. Molecular Cell 2002; 9(1):187-194. http://dx.doi.org/10.1016/S1097-2765(02)00435-5
   PubMed Web of Science ®Google Scholar
• Bassetti M, Merelli M, Temperoni C, Astilean A. New antibiotics for bad bugs: where are we? Ann Clin Microbiol Antimicrob 2013; 12:22; PMID:23984642; http://dx.doi.org/10.1186/1476-0711-12-22
   PubMed Web of Science ®Google Scholar
• Breidenstein EB, de la Fuente-Núñez C, Hancock RE. Pseudomonas aeruginosa: all roads lead to resistance. Trends in Microbiology 2011; 19(8):419-26. doi: 10.1016/j.tim.2011.04.005
   PubMed Web of Science ®Google Scholar
• Courvalin P. Predictable and unpredictable evolution of antibiotic resistance. Journal of internal medicine 2008; 264(1):4-16. doi: 10.1111/j.1365-2796.2008.01940.x
   PubMed Web of Science ®Google Scholar
• Kime L, Vincent HA, Gendoo DMA, Jourdan SS, Fishwick CWG, Callaghan AJ & McDowall KJ. The first small-molecule inhibitors of members of the ribonuclease E family. Scientific Reports 2015; 5:8028. doi: 10.1038/srep08028
   PubMed Web of Science ®Google Scholar
• Rose T, Verbeken G, Vos DD, Merabishvili M, Vaneechoutte M, Lavigne R, Jennes S, Zizi M, Pirnay J-P. Experimental phage therapy of burn wound infection: difficult first steps. Int J Burns Trauma 2014 Oct 26; 4(2):66-73; PMID:25356373
   PubMedGoogle Scholar
• Brüssow H. What is needed for phage therapy to become a reality in Western medicine? Virology 2012; 434(2):138-42. doi: 10.1016/j.virol.2012.09.015
   PubMed Web of Science ®Google Scholar
• Endersen L, O'Mahony J, Hill C, Ross RP, McAuliffe O, Coffey A. Phage therapy in the food industry. Annual review of food science and technology 2014; 5:327-49. doi: 10.1146/annurev-food-030713-092415
   PubMed Web of Science ®Google Scholar
• Mackie GA. RNase E: at the interface of bacterial RNA processing and decay. Nature reviews. Microbiology 2013; 11(1):45-57. doi: 10.1038/nrmicro2930
   PubMed Web of Science ®Google Scholar
• Maiväli Ü, Paier A, Tenson T. When stable RNA becomes unstable: the degradation of ribosomes in bacteria and beyond. Biol Chem 2013; 394(7):845-55; PMID:23241849; http://dx.doi.org/10.1515/hsz-2013-0133
   PubMed Web of Science ®Google Scholar
• Deutscher MP. Degradation of stable RNA in Bacteria. The Journal of Biological Chemistry 2003; 278:45041-45044. doi: 10.1074/jbc.R300031200
   PubMed Web of Science ®Google Scholar
• Sulthana S, Basturea GN & Deutscher MP. Elucidation of pathways of ribosomal RNA degradation: an essential role for RNase E. RNA 2016; 22(8):1163-71. Doi: 10.1261/rna.056275.116
   PubMed Web of Science ®Google Scholar
• Górna MW, Pietras Z, Tsai YC, Callaghan AJ, Hernández H, Robinson CV, Luisi BF. The regulatory protein RraA modulates RNA-binding and helicase activities of the E. coli RNA degradosome. RNA 2010; 16(3):553-62. doi: 10.1261/rna.1858010
   PubMed Web of Science ®Google Scholar