Knockdown of BC200 RNA expression reduces cell migration and invasion by destabilizing mRNA for calcium-binding protein S100A11

References

• Lin D, Pestova TV, Hellen CU, Tiedge H. Translational control by a small RNA: dendritic BC1 RNA targets the eukaryotic initiation factor 4A helicase mechanism. Mol Cell Biol 2008; 28:3008-19; PMID:18316401; https://doi.org/10.1128/MCB.01800-07
   PubMed Web of Science ®Google Scholar
• Kondrashov AV, Kiefmann M, Ebnet K, Khanam T, Muddashetty RS, Brosius J. Inhibitory effect of naked neural BC1 RNA or BC200 RNA on eukaryotic in vitro translation systems is reversed by poly(A)-binding protein (PABP). J Mol Biol 2005; 353:88-103; PMID:16154588; https://doi.org/10.1016/j.jmb.2005.07.049
   PubMed Web of Science ®Google Scholar
• Tiedge H, Chen W, Brosius J. Primary structure, neural-specific expression, and dendritic location of human BC200 RNA. J Neurosci 1993; 13:2382-90; PMID:7684772
   PubMed Web of Science ®Google Scholar
• Eom T, Berardi V, Zhong J, Risuleo G, Tiedge H. Dual Nature of Translational Control by Regulatory BC RNAs. Mol Cell Biol 2011; 31:4538-49; PMID:21930783; https://doi.org/10.1128/MCB.05885-11
   PubMed Web of Science ®Google Scholar
• Muslimov IA, Patel MV, Rose A, Tiedge H. Spatial code recognition in neuronal RNA targeting: role of RNA-hnRNP A2 interactions. J Cell Biol 2011; 194:441-57; PMID:21807882; https://doi.org/10.1083/jcb.201010027
   PubMed Web of Science ®Google Scholar
• Eom T, Muslimov IA, Tsokas P, Berardi V, Zhong J, Sacktor TC, Tiedge H. Neuronal BC RNAs cooperate with eIF4B to mediate activity-dependent translational control. J Cell Biol 2014; 207:237-52; PMID:25332164; https://doi.org/10.1083/jcb.201401005
   PubMed Web of Science ®Google Scholar
• Hasler J, Strub K. Alu RNP and Alu RNA regulate translation initiation in vitro. Nucleic Acids Res 2006; 34:2374-85; PMID:16682445; https://doi.org/10.1093/nar/gkl246
   PubMed Web of Science ®Google Scholar
• Rozhdestvensky TS, Kopylov AM, Brosius J, Huttenhofer A. Neuronal BC1 RNA structure: evolutionary conversion of a tRNA(Ala) domain into an extended stem-loop structure. RNA 2001; 7:722-30; PMID:11350036; https://doi.org/10.1017/S1355838201002485
   PubMed Web of Science ®Google Scholar
• Mus E, Hof PR, Tiedge H. Dendritic BC200 RNA in aging and in Alzheimer's disease. Proc Natl Acad Sci U S A 2007; 104:10679-84; PMID:17553964; https://doi.org/10.1073/pnas.0701532104
   PubMed Web of Science ®Google Scholar
• Chen W, Bocker W, Brosius J, Tiedge H. Expression of neural BC200 RNA in human tumours. J Pathol 1997; 183:345-51; PMID:9422992; https://doi.org/10.1002/(SICI)1096-9896(199711)183:3%3c345::AID-PATH930%3e3.0.CO;2-8
   PubMed Web of Science ®Google Scholar
• Gibb EA, Brown CJ, Lam WL. The functional role of long non-coding RNA in human carcinomas. Mol Cancer 2011; 10:38; PMID:21489289; https://doi.org/10.1186/1476-4598-10-38
   PubMed Web of Science ®Google Scholar
• Iacoangeli A, Lin Y, Morley EJ, Muslimov IA, Bianchi R, Reilly J, Weedon J, Diallo R, Böcker W, Tiedge H. BC200 RNA in invasive and preinvasive breast cancer. Carcinogenesis 2004; 25:2125-33; PMID:15240511; https://doi.org/10.1093/carcin/bgh228
   PubMed Web of Science ®Google Scholar
• Hu T, Lu YR. BCYRN1, a c-MYC-activated long non-coding RNA, regulates cell metastasis of non-small-cell lung cancer. Cancer Cell Inter 2015; 15:36; PMID:25866480; https://doi.org/10.1186/s12935-015-0183-3
   PubMed Web of Science ®Google Scholar
• Li P, Yang B, Xia SY, Chen L, Ning N, Ma B, et al. BC200 RNA is over-expressed in colorectal cancer and promotes migration and invasion of HCT116 cells. Int J Clin Exp Patho 2016; 9:1481-6
   Web of Science ®Google Scholar
• Reuter JA, Spacek DV, Snyder MP. High-throughput sequencing technologies. Mol Cell 2015; 58:586-97; PMID:26000844; https://doi.org/10.1016/j.molcel.2015.05.004
   PubMed Web of Science ®Google Scholar
• Ingolia NT. Ribosome Footprint Profiling of Translation throughout the Genome. Cell 2016; 165:22-33; PMID:27015305; https://doi.org/10.1016/j.cell.2016.02.066
   PubMed Web of Science ®Google Scholar
• Ingolia NT, Ghaemmaghami S, Newman JR, Weissman JS. Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling. Science 2009; 324:218-23; PMID:19213877; https://doi.org/10.1126/science.1168978
   PubMed Web of Science ®Google Scholar
• Bhan A, Mandal SS. Long noncoding RNAs: emerging stars in gene regulation, epigenetics and human disease. ChemMedChem 2014; 9:1932-56; PMID:24677606; https://doi.org/10.1002/cmdc.201300534
   PubMed Web of Science ®Google Scholar
• Fan C, Fu Z, Su Q, Angelini DJ, Van Eyk J, Johns RA. S100A11 mediates hypoxia-induced mitogenic factor (HIMF)-induced smooth muscle cell migration, vesicular exocytosis, and nuclear activation. Mol Cell Proteom 2011; 10:M110 000901; PMID: 21139050; https://doi.org/10.1074/mcp.M110.000901
   PubMed Web of Science ®Google Scholar
• Luo X, Xie H, Long X, Zhou M, Xu Z, Shi B, Jiang H, Li Z. EGFRvIII mediates hepatocellular carcinoma cell invasion by promoting S100 calcium binding protein A11 expression. PloS One 2013; 8:e83332; PMID:24376686; https://doi.org/10.1371/journal.pone.0083332
   PubMed Web of Science ®Google Scholar
• Jaiswal JK, Lauritzen SP, Scheffer L, Sakaguchi M, Bunkenborg J, Simon SM, Kallunki T, Jäättelä M, Nylandsted J. S100A11 is required for efficient plasma membrane repair and survival of invasive cancer cells. Nat Commun 2014; 5:3795; PMID:24806074; https://doi.org/10.1038/ncomms4795
   PubMed Web of Science ®Google Scholar
• Gabril M, Girgis H, Scorilas A, Rotondo F, Wala S, Bjarnason GA, Ding Q, Evans A, Tawedrous E, Pasic M, et al. S100A11 is a potential prognostic marker for clear cell renal cell carcinoma. Clin Exp Metastasis 2016; 33:63-71; PMID: 21139050; https://doi.org/10.1007/s10585-015-9758-6
   PubMed Web of Science ®Google Scholar
• Niu Y, Shao Z, Wang H, Yang J, Zhang F, Luo Y, Xu L, Ding Y, Zhao L. LASP1-S100A11 axis promotes colorectal cancer aggressiveness by modulating TGFbeta/Smad signaling. Sci Rep 2016; 6:26112; PMID:27181092; https://doi.org/10.1038/srep26112
   PubMed Web of Science ®Google Scholar
• Matveeva O, Nechipurenko Y, Rossi L, Moore B, Saetrom P, Ogurtsov AY, Atkins JF, Shabalina SA. Comparison of approaches for rational siRNA design leading to a new efficient and transparent method. Nucleic Acids Res 2007; 35:e63; PMID:17426130; https://doi.org/10.1093/nar/gkm088
   PubMed Web of Science ®Google Scholar
• Zhao XY, Lin JD. Long Noncoding RNAs: A New Regulatory Code in Metabolic Control. Trends Biochem Sci 2015; 40:586-96; PMID:26410599; https://doi.org/10.1016/j.tibs.2015.08.002
   PubMed Web of Science ®Google Scholar
• Moran VA, Perera RJ, Khalil AM. Emerging functional and mechanistic paradigms of mammalian long non-coding RNAs. Nucleic Acids Res 2012; 40:6391-400; PMID:22492512; https://doi.org/10.1093/nar/gks296
   PubMed Web of Science ®Google Scholar
• Bannister AJ, Kouzarides T. Regulation of chromatin by histone modifications. Cell Res 2011; 21:381-95; PMID:21321607; https://doi.org/10.1038/cr.2011.22
   PubMed Web of Science ®Google Scholar
• Iacoangeli A, Tiedge H. Translational control at the synapse: role of RNA regulators. Trends Biochem Sci 2013; 38:47-55; PMID:23218750; https://doi.org/10.1016/j.tibs.2012.11.001
   PubMed Web of Science ®Google Scholar
• Thomas SJ, Snowden JA, Zeidler MP, Danson SJ. The role of JAK/STAT signalling in the pathogenesis, prognosis and treatment of solid tumours. Br J Cancer 2015; 113:365-71; PMID:26151455; https://doi.org/10.1038/bjc.2015.233
   PubMed Web of Science ®Google Scholar
• Demaria M, Giorgi C, Lebiedzinska M, Esposito G, D'Angeli L, Bartoli A, Gough DJ, Turkson J, Levy DE, Watson CJ, et al. A STAT3-mediated metabolic switch is involved in tumour transformation and STAT3 addiction. Aging 2010; 2:823-42; PMID:21084727; https://doi.org/10.18632/aging.100232
   PubMedGoogle Scholar
• Kortylewski M, Kujawski M, Wang T, Wei S, Zhang S, Pilon-Thomas S, Niu G, Kay H, Mulé J, Kerr WG, et al. Inhibiting Stat3 signaling in the hematopoietic system elicits multicomponent antitumor immunity. Nat Med 2005; 11:1314-21; PMID:16288283; https://doi.org/10.1038/nm1325
   PubMed Web of Science ®Google Scholar
• Cho KH, Jeong KJ, Shin SC, Kang J, Park CG, Lee HY. STAT3 mediates TGF-beta1-induced TWIST1 expression and prostate cancer invasion. Cancer Lett 2013; 336:167-73; PMID:23623921; https://doi.org/10.1016/j.canlet.2013.04.024
   PubMed Web of Science ®Google Scholar
• Gross SR, Sin CG, Barraclough R, Rudland PS. Joining S100 proteins and migration: for better or for worse, in sickness and in health. Cell Mol Life Sci 2014; 71:1551-79; PMID:23811936; https://doi.org/10.1007/s00018-013-1400-7
   PubMed Web of Science ®Google Scholar
• Eades G, Wolfson B, Zhang Y, Li Q, Yao Y, Zhou Q. lincRNA-RoR and miR-145 regulate invasion in triple-negative breast cancer via targeting ARF6. Mol Cancer Res 2015; 13:330-8; PMID:25253741; https://doi.org/10.1158/1541-7786.MCR-14-0251
   PubMed Web of Science ®Google Scholar
• Yuan JH, Yang F, Wang F, Ma JZ, Guo YJ, Tao QF, Liu F, Pan W, Wang TT, Zhou CC, et al. A long noncoding RNA activated by TGF-beta promotes the invasion-metastasis cascade in hepatocellular carcinoma. Cancer Cell 2014; 25:666-81; PMID:24768205; https://doi.org/10.1016/j.ccr.2014.03.010
   PubMed Web of Science ®Google Scholar
• Wang SH, Zhang WJ, Wu XC, Weng MZ, Zhang MD, Cai Q, Zhou D, Wang JD, Quan ZW. The lncRNA MALAT1 functions as a competing endogenous RNA to regulate MCL-1 expression by sponging miR-363-3p in gallbladder cancer. J Cell Mol Med 2016; 20(12):2299-308; PMID:27420766; https://doi.org/10.1111/jcmm.12920
   PubMed Web of Science ®Google Scholar
• Engreitz JM, Sirokman K, McDonel P, Shishkin AA, Surka C, Russell P, Grossman SR, Chow AY, Guttman M, Lander ES. RNA-RNA interactions enable specific targeting of noncoding RNAs to nascent Pre-mRNAs and chromatin sites. Cell 2014; 159:188-99; PMID:25259926; https://doi.org/10.1016/j.cell.2014.08.018
   PubMed Web of Science ®Google Scholar
• Shin H, Lee J, Kim Y, Jang S, Ohn T, Lee Y. Identifying the cellular location of brain cytoplasmic 200 RNA using an RNA-recognizing antibody. BMB Rep 2017; pii: 3721; PMID:28042783
   Web of Science ®Google Scholar
• Marino-Ramirez L, Kann MG, Shoemaker BA, Landsman D. Histone structure and nucleosome stability. Expert Rev Proteomics 2005; 2:719-29; PMID:16209651; https://doi.org/10.1586/14789450.2.5.719
   PubMed Web of Science ®Google Scholar
• Gorsler T, Murzik U, Ulbricht T, Hentschel J, Hemmerich P, Melle C. DNA damage-induced translocation of S100A11 into the nucleus regulates cell proliferation. BMC Cell Biol 2010; 11:100; PMID:21167017; https://doi.org/10.1186/1471-2121-11-100
   PubMed Web of Science ®Google Scholar
• Nam EH, Lee Y, Moon B, Lee JW, Kim S. Twist1 and AP-1 cooperatively upregulate integrin alpha5 expression to induce invasion and the epithelial-mesenchymal transition. Carcinogenesis 2015; 36:327-37; PMID:25600770; https://doi.org/10.1093/carcin/bgv005
   PubMed Web of Science ®Google Scholar
• Ingolia NT, Brar GA, Rouskin S, McGeachy AM, Weissman JS. The ribosome profiling strategy for monitoring translation in vivo by deep sequencing of ribosome-protected mRNA fragments. Nat Protocols 2012; 7:1534-50; PMID:22836135; https://doi.org/10.1038/nprot.2012.086
   PubMed Web of Science ®Google Scholar
• Robinson MD, McCarthy DJ, Smyth GK. edgeR: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics 2010; 26:139-40; PMID:19910308; https://doi.org/10.1093/bioinformatics/btp616
   PubMed Web of Science ®Google Scholar
• Livak KJ, Schmittgen TD. Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method. Methods 2001; 25:402-8; PMID:11846609; https://doi.org/10.1006/meth.2001.1262
   PubMed Web of Science ®Google Scholar
• Li Y, Francia G, Zhang JY. p62/IMP2 stimulates cell migration and reduces cell adhesion in breast cancer. Oncotarget 2015; 6:32656-68; PMID:26416451; https://doi.org/10.18632/oncotarget.5328
   PubMed Web of Science ®Google Scholar
• Bak G, Lee J, Suk S, Kim D, Young Lee J, Kim KS, Choi BS, Lee Y. Identification of novel sRNAs involved in biofilm formation, motility, and fimbriae formation in Escherichia coli. Sci Rep 2015; 5:15287; PMID:26469694; https://doi.org/10.1038/srep15287
   PubMed Web of Science ®Google Scholar
• Binns D, Dimmer E, Huntley R, Barrell D, O'Donovan C, Apweiler R. QuickGO: a web-based tool for Gene Ontology searching. Bioinformatics 2009; 25:3045-6; PMID:19744993; https://doi.org/10.1093/bioinformatics/btp536
   PubMed Web of Science ®Google Scholar