References
- Waters LS, Storz G. Regulatory RNAs in bacteria. Cell. 2009;136:615–28.
- Breaker RR, McCown P, Corbino K, et al. Riboswitch diversity and distribution. RNA. 2017;23(7):995–1011.
- Serganov A, Nudler E. A decade of riboswitches. Cell. 2013;152:17–24.
- Jones CP, Ferré-D'Amaré AR. Long-range interactions in riboswitch control of gene expression. Annu Rev Biophys. 2017;46:455–81.
- Garst AD, Edwards AL, Batey RT. Riboswitches: structures and mechanisms. Cold Spring Harb Perspect Biol. 2011;3:1–6.
- Mandal M, Breaker RR. Gene regulation by riboswitches. Nat Rev Mol Cell Biol. 2004;5:451–63.
- Caron MP, Bastet L, Lussier A, et al. Dual-acting riboswitch control of translation initiation and mRNA decay. Proc Natl Acad Sci U S A. 2012;109:E3444–53.
- Hollands K, Proshkin S, Sklyarova S, et al. Riboswitch control of Rho-dependent transcription termination. Proc Natl Acad Sci U S A. 2012;109:5376–81.
- Chauvier A, Picard-Jean F, Berger-Dancause J-C, et al. Transcriptional pausing at the translation start site operates as a critical checkpoint for riboswitch regulation. Nat Commun. 2017;8:13892.
- Bastet L, Chauvier A, Singh N, et al. Translational control and Rho-dependent transcription termination are intimately linked in riboswitch regulation. Nucleic Acids Res. 2017;45(12):7474–7486.
- Merino E, Yanofsky C. Transcription attenuation: a highly conserved regulatory strategy used by bacteria. Trends Genet. 2005;21:260–4.
- Yanofsky C. RNA-based regulation of genes of tryptophan synthesis and degradation, in bacteria. RNA. 2007;13:1141–54.
- Konan K V, Yanofsky C. Role of ribosome release in regulation of tna operon expression in Escherichia coli. J Bacteriol. 1999;181:1530–6.
- Stewart V, Landick R, Yanofsky C. Rho-dependent transcription termination in the tryptophanase operon leader region of Escherichia coli K-12. J Bacteriol. 1986;166:217–23.
- Deana A, Belasco JG. Lost in translation: the influence of ribosomes on bacterial mRNA decay. Genes Dev. 2005;19:2526–33.
- Peters JM, Vangeloff AD, Landick R. Bacterial transcription terminators: The RNA 3′-end chronicles. J Mol Biol. 2011;412:793–813.
- Kriner MA, Sevostyanova A, Groisman EA. Learning from the Leaders: Gene regulation by the transcription termination factor Rho. Trends Biochem Sci. 2016;41:690–9.
- Mitra P, Ghosh G, Hafeezunnisa M, et al. Rho protein: Roles and mechanisms. Annu Rev Microbiol. 2017;71:687–709.
- Martinez A, Burns CM, Richardson JP. Residues in the RNP1-like sequence motif of Rho protein are involved in RNA-binding affinity and discrimination. J Mol Biol. 1996;257:909–18.
- Sedlyarova N, Shamovsky I, Bharati BK, et al. sRNA-Mediated Control of Transcription Termination in E. coli. Cell. 2016;167:111–121.e13.
- Nou X, Kadner RJ. Adenosylcobalamin inhibits ribosome binding to btuB RNA. Proc Natl Acad Sci U S A. 2000;97:7190–5.
- Takemoto N, Tanaka Y, Inui M. Rho and RNase play a central role in FMN riboswitch regulation in Corynebacterium glutamicum. Nucleic Acids Res. 2015;43:520–9.
- Ontiveros-Palacios N, Smith AM, Grundy FJ, et al. Molecular basis of gene regulation by the THI-box riboswitch. Mol Microbiol. 2008;67:793–803.
- Franklund C V, Kadner RJ. Multiple transcribed elements control expression of the Escherichia coli btuB gene. J Bacteriol. 1997;179:4039–42.
- Dreyfus M. Killer and protective ribosomes. Prog Mol Biol Transl Sci. 2009;85:423–66.
- Weinberg Z, Lünse CE, Corbino KA, et al. Detection of 224 candidate structured RNAs by comparative analysis of specific subsets of intergenic regions. Nucleic Acids Res. 2017;45:10811–23.