925
Views
4
CrossRef citations to date
0
Altmetric
Research Paper

A novel incompatibility group X3 plasmid carrying blaNDM-1 encodes a small RNA that regulates host fucose metabolism and biofilm formation

, ORCID Icon, ORCID Icon, , ORCID Icon, ORCID Icon & ORCID Icon show all
Pages 1767-1776 | Received 04 Sep 2019, Accepted 29 Apr 2020, Published online: 28 Jun 2020

References

  • Yong D, Toleman MA, Giske CG, et al. Characterization of a new metallo-beta-lactamase gene, bla(NDM-1), and a novel erythromycin esterase gene carried on a unique genetic structure in Klebsiella pneumoniae sequence type 14 from India. Antimicrob Agents Chemother. 2009;53(12):5046–5054..
  • Kumarasamy KK, Toleman MA, Walsh TR, et al. Emergence of a new antibiotic resistance mechanism in India, Pakistan, and the UK: a molecular, biological, and epidemiological study. Lancet Infect Dis. 2010;10(9):597–602..
  • Falagas ME, Karageorgopoulos DE. Extended-spectrum beta-lactamase-producing organisms. J Hosp Infect. 2009;73(4):345–354.
  • Kong HK, Liu X, Lo WU, et al. Identification of plasmid-encoded sRNAs in a bla(NDM-1)-harboring multidrug-resistance plasmid pNDM-HK in enterobacteriaceae. Front Microbiol. 2018;9. DOI:10.3389/fmicb.2018.00532.
  • Villa L, Poirel L, Nordmann P, et al. Complete sequencing of an IncH plasmid carrying the blaNDM-1, blaCTX-M-15 and qnrB1 genes. J Antimicrob Chemother. 2012;67(7):1645–1650..
  • Poirel L, Bonnin RA, Nordmann P. Analysis of the resistome of a multidrug-resistant NDM-1-producing Escherichia coli strain by high-throughput genome sequencing. Antimicrob Agents Chemother. 2011;55(9):4224–4229.
  • Nordmann P, Poirel L, Walsh TR, et al. The emerging NDM carbapenemases. Trends Microbiol. 2011;19(12):588–595..
  • Kim MN, Yong D, An D, et al. Nosocomial clustering of NDM-1-producing Klebsiella pneumoniae sequence type 340 strains in four patients at a South Korean tertiary care hospital. J Clin Microbiol. 2012;50(4):1433–1436..
  • Ho PL, Li Z, Lai EL, et al. Emergence of NDM-1-producing Enterobacteriaceae in China. J Antimicrob Chemother. 2012;67(6):1553–1555..
  • Ho PL, Cheung -Y-Y, Lo W-U, et al. Molecular characterization of an atypical incX3 plasmid pKPC-NY79 carrying bla KPC-2 in a klebsiella pneumoniae. Curr Microbiol. 2013;67(4):493–498..
  • Ho PL, Li Z, Lo WU, et al. Identification and characterization of a novel incompatibility group X3 plasmid carrying blaNDM-1 in Enterobacteriaceae isolates with epidemiological links to multiple geographical areas in China. Emer Mic Infect. 2012;1:e39.
  • Fu Y, Du X, Ji J, et al. Epidemiological characteristics and genetic structure of blaNDM-1 in non-baumannii Acinetobacter spp. in China. J Antimicrob Chemother. 2012;67(9):2114–2122..
  • Poirel L, Bonnin RA, Boulanger A, et al. Tn 125-related acquisition of bla NDM-like genes in acinetobacter baumannii. Antimicrob Agents Chemother. 2012;56(2):1087–1089..
  • Abe T, Shimoyama T, Fukuda S, et al. Effects of Helicobacter pylori in the stomach on neutrophil chemiluminescence in patients with gastric cancer. Luminescence. 2000;15(5):267–271..
  • Nikaido H, Pages J-M. Broad-specificity efflux pumps and their role in multidrug resistance of Gram-negative bacteria. FEMS Microbiol Rev. 2012;36(2):340–363.
  • Miyakoshi M, Nishida H, Shintani M, et al. High-resolution mapping of plasmid transcriptomes in different host bacteria. BMC Genomics. 2009;10(1):1–15..
  • Frost LS, Leplae R, Summers AO, et al. Mobile genetic elements: the agents of open source evolution. Nat Rev Microbiol. 2005;3(9):722–732..
  • Miyakoshi M, Shintani M, Terabayashi T, et al. Transcriptome analysis of Pseudomonas putida KT2440 harboring the completely sequenced IncP-7 plasmid pCAR1. J Bacteriol. 2007;189(19):6849–6860..
  • Cook LCC, Dunny GM. The influence of biofilms in the biology of plasmids. Microbiol Spectr. 2014;2(5):0012.
  • Nakao R, Myint SL, Wai SN, et al. Enhanced biofilm formation and membrane vesicle release by Escherichia coli expressing a commonly occurring plasmid gene, kil. Front Microbiol. 2018;9:2605.
  • Narenkumar J, Madhavan J, Nicoletti M, et al. Role of bacterial plasmid on biofilm formation and its influence on corrosion of engineering materials. J Bio Tribo Corro. 2016;2(4):24..
  • Masse E, Majdalani N, Gottesman S. Regulatory roles for small RNAs in bacteria. Curr Opin Microbiol. 2003;6(2):120–124.
  • Kim T, Bak G, Lee J, et al. Systematic analysis of the role of bacterial Hfq-interacting sRNAs in the response to antibiotics. J Antimicrob Chemother. 2015;70(6):1659–1668..
  • Ramos CG, Grilo AM, Sousa SA, et al. Regulation of Hfq mRNA and protein levels in Escherichia coli and Pseudomonas aeruginosa by the Burkholderia cenocepacia MtvR sRNA. PLoS One. 2014;9(6):e98813..
  • Masse E, Gottesman S. A small RNA regulates the expression of genes involved in iron metabolism in Escherichia coli. Proc Natl Acad Sci U S A. 2002;99(7):4620–4625.
  • Thomas VC, Kinkead LC, Janssen A, et al. A dysfunctional tricarboxylic acid cycle enhances fitness of Staphylococcus epidermidis during β-lactam stress [published correction appears in MBio. 2014;5(3):e01307-14. Chittezham Thomas, Vinai [corrected to Thomas, Vinai C]]. mBio. 2013;4(4):e00437-13. Published 2013 Aug 20. DOI:10.1128/mBio.00437-13.
  • Yi H, Cho Y-J, Yong D, et al. Genome sequence of Escherichia coli J53, a reference strain for genetic studies. J Bacteriol. 2012;194(14):3742–3743..
  • Hanahan D. Studies on transformation of Escherichia coli with plasmids. J Mol Biol. 1983;166(4):557–580.
  • Robinson JT, Thorvaldsdóttir H, Winckler W, et al. Integrative genomics viewer. Nat Biotechnol. 2011;29(1):24–26..
  • Krzywinski MI, Schein J, Birol I, et al. Circos: an information aesthetic for comparative genomics. Genome Research; 2009;19(9):1639–1645. DOI:10.1101/gr.092759.109.
  • Bak G, Han K, Kim KS, Lee Y, et al. Electrophoretic mobility shift assay of RNA-RNA complexes. Methods Mol Biol. 2015;1240:153–163. DOI:10.1007/978-1-4939-1896-6_12.
  • Li J, Attila C, Wang L, et al. Quorum sensing in Escherichia coli is signaled by AI-2/LsrR: effects on small RNA and biofilm architecture. J Bacteriol. 2007;189(16):6011–6020..
  • Chen YM, Lu Z, Lin EC. Constitutive activation of the fucAO operon and silencing of the divergently transcribed fucPIK operon by an IS5 element in Escherichia coli mutants selected for growth on L-1,2-propanediol. J Bacteriol. 1989;171(11):6097–6105.
  • Dwivedi R, Nothaft H, Garber J, et al. L-fucose influences chemotaxis and biofilm formation in Campylobacter jejuni. Mol Microbiol. 2016;101(4):575–589..
  • Baquero F, Alvarez-Ortega C, Martinez JL. Ecology and evolution of antibiotic resistance. Environ Microbiol Rep. 2009;1(6):469–476.
  • Falkow S, Citarella RV, Wohlhieter JA, et al. The molecular nature of R-factors. J Mol Biol. 1966;17(1):102–116..
  • Sugino Y, Hirota Y. Conjugal fertility associated with resistance factor R in Escherichia coli. J Bacteriol. 1962;84(5):902–910.
  • Livermore DM. Beta-Lactamases in laboratory and clinical resistance. Clin Microbiol Rev. 1995;8(4):557–584.
  • Top EM, Springael D. The role of mobile genetic elements in bacterial adaptation to xenobiotic organic compounds. Curr Opin Biotechnol. 2003;14(3):262–269.
  • Sonnevend A, Al Baloushi A, Ghazawi A, et al. Emergence and spread of NDM-1 producer Enterobacteriaceae with contribution of IncX3 plasmids in the United Arab Emirates. J Med Microbiol. 2013;62(Pt 7):1044–1050..
  • Jiang X, Liu X, Law COK, et al. The CTX-M-14 plasmid pHK01 encodes novel small RNAs and influences host growth and motility. FEMS Microbiol Ecol. 2017;93(7). DOI:10.1093/femsec/fix090.
  • Zhao K, Liu M, Burgess RR. Adaptation in bacterial flagellar and motility systems: from regulon members to ‘foraging’-like behavior in E. coli. Nucleic Acids Res. 2007;35(13):4441–4452.
  • Diel B, Dequivre M, Wisniewski‐Dyé F, et al. A novel plasmid-transcribed regulatory sRNA, QfsR, controls chromosomal polycistronic gene expression in Agrobacterium fabrum. Environ Microbiol. 2019;21(8):3063–3075..
  • Patton MJ, Chen C-Y, Yang C, et al. Plasmid negative regulation of CPAF expression is pgp4 independent and restricted to invasive chlamydia trachomatis biovars. mBio. 2018;9(1):e02164–17..
  • Di Venanzio G, Moon KH, Weber BS, et al. Multidrug-resistant plasmids repress chromosomally encoded T6SS to enable their dissemination. Proc Nat Aca Sci USA. 2019;116(4):1378–1383.
  • Pacheco AR, Curtis MM, Ritchie JM, et al. Fucose sensing regulates bacterial intestinal colonization. Nature. 2012;492(7427):113–117.
  • Robbe C, CAPON C, CODDEVILLE B, et al. Structural diversity and specific distribution of O-glycans in normal human mucins along the intestinal tract. Biochem J. 2004;384(Pt 2):307–316.
  • Balcazar JL, Subirats J, Borrego CM. The role of biofilms as environmental reservoirs of antibiotic resistance. Front Microbiol. 2015;6:1216.
  • Bialoszewski D, Pietruczuk-Padzik A, Kalicinska A, et al. Activity of ozonated water and ozone against Staphylococcus aureus and Pseudomonas aeruginosa biofilms. Med Sci Monit. 2011;17(11):Br339–344.
  • Azeredo J, Sutherland IW. The use of phages for the removal of infectious biofilms. Curr Pharm Biotechnol. 2008;9(4):261–266.
  • Torelli R, Cacaci M, Papi M, et al. Different effects of matrix degrading enzymes towards biofilms formed by E. faecalis and E. faecium clinical isolates. Colloids Surf B Biointerfaces. 2017;158:349–355.
  • Chopra L, Singh G, Kumar Jena K, et al. Sonorensin: A new bacteriocin with potential of an anti-biofilm agent and a food biopreservative. Sci Rep. 2015;5:13412.
  • de Lima Pimenta A, Chiaradia-Delatorre LD, Mascarello A, et al. Synthetic organic compounds with potential for bacterial biofilm inhibition, a path for the identification of compounds interfering with quorum sensing. Int J Antimicrob Agents. 2013;42(6):519–523.
  • Magesh H, Kumar A, Alam A, et al. Identification of natural compounds which inhibit biofilm formation in clinical isolates of Klebsiella pneumoniae. Indian J Exp Biol. 2013;51(9):764–772.

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.