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Research Article

Microsatellite Markers Analysis for the Genetic Characterization and Relationships among Some of Iranian Local Grapevine Accessions (Vitis Vinifera L.)

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Literature Cited

  • Agar, G., N. Yildirim, S. Ercisli, A. Ergul, and C. Yuksel. 2012. Determination of genetic diversity of Vitis vinifera cv. Kabarcik populations from the Coruh valley using SSR markers. Biochem. Genet 50:476–483. doi: 10.1007/s10528-011-9492-y.
  • Arnold, C., M. Rossetto, J. Mcnally, and R.J. Henry. 2002. The application of SSRs characterized for grape (Vitis vinifera) to conservation studies in Vitaceae. Am. J. Bot. 89(1):22–28. doi: 10.3732/ajb.89.1.22.
  • Bassam, B.J., G. Caetano-Anolles, and P.M. Gresshoff. 1991. Fast and sensitive silver staining of DNA in acrylamide gels. Anal. Biochem. 196:80–83. doi: 10.1016/0003-2697(91)90120-i.
  • Borrego, J., I. Rodriguez, M.T. Andrés, J. Martin, J. Chavez, F. Cabello, and J. Ibáñez. 2001. Characterization of the most important Spanish grape varieties through isoenzyme and microsatellite analysis. Proc. Int. Symp. On Molecular Markers. Acta Hort. 546:371–375. doi: 10.17660/ActaHortic.2001.546.46.
  • Botstein, D., R.L. White, M. Skolnick, and R.W. Davis. 1980. Construction of a genetic linkage map in man using restriction fragment length polymorphisms. Am. J. Hum. Genet. 32:314–331.
  • Bowers, J.E., G.S. Dangl, and C.P. Meredith. 1999. Development and characterization of additional microsatellite DNA markers for grape. Am. J. Enol. Vitic. 50:243–246.
  • Bowers, J.E., G.S. Dangl, R. Vignani, and C.P. Meredith. 1996. Isolation and characterization of new polymorphic simple sequence repeat loci in grape (Vitis vinifera L.). Genome 39:628–633. doi: 10.1139/g96-080.
  • Bowers, J.E., and C.P. Meredith. 1997. The parentage of a classic wine grape, Cabernet Sauvignon. Nat. Genet 16(1):84–87. doi: 10.1038/ng0597-84.
  • Cipriani, G., M.T. Marrazzo, G. Di Gaspero, A. Pfeiffer, M. Morgante, and R. Testolin. 2008. A set of microsatellite markers with long core repeat optimized for grape (Vitis spp.) genotyping. BMC Plant Biol. 8:127. doi: 10.1186/1471-2229-8-127.
  • Cipriani, G., A. Spadotto, I. Jurman, G. Di Gaspero, M. Crespan, S. Meneghetti, E. Frare, R. Vignani, M. Cresti, M. Morgante, et al. 2010. The SSR-based molecular profile of 1005 grapevine (Vitis vinifera L.) accessions uncovers new synonymy and parentages, and reveals a large admixture amongst varieties of different geographic origin. Theor. Appl. Genet 121:1569–1585. doi: 10.1007/s00122-010-1411-9.
  • Crespan, M., R. Botta, and N. Milani. 1999. Molecular characterization of twenty seeded and seedless table grape cultivars (Vitis vinifera L.). Vitis 38: 87–82.
  • Crespan, M., and N. Milani. 2001. The muscats: A molecular analysis of synonyms, homonyms and genetic relationship within a large family of grapevine cultivars. Vitis 40:23–30.
  • da Silva, T.A., L.B. Cantagalli, J. Saavedra, A.D. Lopes, C.A. Mangolin, M.F.P.S. Machado, and C.A. Scapim. 2015. Population structure and genetic diversity of Brazilian popcorn germplasm inferred by microsatellite markers. Electron. J. Biotechn. 18(3):181–187. doi: 10.1016/j.ejbt.2015.03.005.
  • Dettweiler, E., and R. Eibach. 2003. The two Vitis databases as tools for germplasm management Vitis international variety catalogue and European Vitis database. Acta Hort. 603:505–509. doi: 10.17660/ActaHortic.2003.603.66.
  • Dong, J., W. Liu, X. Li, W. Tan, O. Zhao, M. Wang, R. Ren, X. Ma, and X. Tang. 2018. Genetic relationships of 34 grapevine varieties and construction of molecular fingerprints by SSR markers. Biotechnol. Biotechnol. Equip. 32(4):942–950. doi: 10.1080/13102818.2018.1450162.
  • Doulati-Baneh, H., S.A. Mohammadi, and M. Labra. 2013. Genetic structure and diversity analysis in Vitis vinifera L. cultivars from Iran using SSR markers. Sci. Hortic 160:29–36. doi: 10.1016/j.scienta.2013.05.029.
  • Ebadi, A., N. Ghaderi, and Y. Vafaee. 2019. Genetic diversity of Iranian and some European grapes as revealed by nuclear and chloroplast microsatellite and SNP molecular markers. J. Hortic. Sci. Biotech. 94(5):599–610. doi: 10.1080/14620316.2019.1585210.
  • Emanuelli, F., S. Lorenzi, L. Grzeskowiak, V. Catalano, M. Stefanini, M. Troggio, S. Myles, J.M. Martinez-Zapater, E. Zyprian, F.M. Moreira, et al. 2013. Genetic diversity and population structure assessed by SSR and SNP markers in a large germplasm collection of grape. BMC Plant Biol. 13:39. doi: 10.1186/1471-2229-13-39.
  • FAO. 2017. FAO production yearbook of the United Nation. http://faostat.fao.org/faostat.
  • Fatahi, R., A. Ebadi, N. Bassil, S.A. Mehlenbacher, and Z. Zamani. 2003. Characterization of Iranian grapevine cultivars using microsatellite markers. Vitis 42:185–192.
  • Gupta, P.K., and R.K. Varshney. 2000. The development and use of microsatellite markers for genetic analysis and plant breeding with emphasis on bread wheat. Euphytica 113(3):163–185. doi: 10.1023/A:100391081.
  • Hanania, U., M. Velcheva, N. Sahar, and A. Perl. 2004. An improved method for isolating high-quality DNA from Vitis vinifera nuclei. Plant Mol. Bio. Rep. 22:173–177. doi: 10.1007/BF02772724.
  • Ibañez, J., M.T. Andrés, A. Molino, and J. Borrego. 2003. Genetic study of key Spanish grapevine varieties using microsatellite analysis. Am. J. Enol. Vitic. 54:22–30.
  • Jaccard, P. 1908. Nouvelles recherches sur la distribution florale. Bull. Soc. Vaud. Sci. Nat. 44:223–270.
  • Khadivi, A., A. Gismondi, and A. Canini. 2017. Genetic characterization of Iranian grapes (Vitis vinifera L.) and their relationships with Italian ecotypes. Agroforest Syst. 93(2):435–447. doi: 10.1007/s10457-017-0134-1.
  • Labagnara, T., C. Bergamini, A.R. Caputo, and P. Cirigliano. 2018. Vitis vinifera L. germplasm diversity: A genetic and ampelometric study in ancient vineyards in the South of Basilicata region (Italy). Vitis 57:1–8. doi: 10.5073/vitis.2018.57.1-8.
  • Laiadi, Z., M. Rahali, and H. Achour. 2018. Molecular clarifications of grapevine identities in Algerian germplasm collections using microsatellite markers. Jordan J. Biol. Sci. 12(3):317–322.
  • Lefort, F., and K.K.A. Roubelakis-Angelakis. 2001. Genetic comparison of Greek cultivars of Vitis vinifera L. by nuclear microsatellite profiling. Am. J. Enol. Vitic 52:101–108.
  • Liu, K.J., and S.V. Muse. 2005. PowerMarker: An integrated analysis environment for genetic marker analysis. Bioinformatics 21:2128−2129. doi: 10.1093/bioinformatics/bti282.
  • Liu, C., X. Fan, J. Jiang, D. Guo, H. Sun, Y. Zhang, and J. Feng. 2014. Genetic diversity of Chinese wild grape species by SSR and SRAP markers. Biotechnol. Biotechnol. Equip. 26(2):899–2903. doi: 10.5504/BBEQ.2011.0146.
  • Martinez-Gomez, P., D. Arulsekar, S. Potter, and T.M. Gradziel. 2003. An extended inter-specific gene pool available to peach and almond breeding as characterized using simple sequence repeat (SSR) markers. Euphytica 131:313–322. doi: 10.1023/A:1024028518263.
  • Migliaro, D., G. De Lorenzis, G.S. Di Lorenzo, B. De Nardi, M. Gardiman, O. Failla, L. Brancadoro, and M. Crespan. 2019. Grapevine non-vinifera genetic diversity assessed by SSR markers as a starting-point for new rootstock breeding programs. Am. J. Enol. Vitic. Ajev. 2019:18054. doi: 10.5344/ajev.2019.18054.
  • Minio, A., J. Lin, B.S. Gaut, and D. Cantu. 2017. How single molecule real-time sequencing and haplotype phasing have enabled reference-grade diploid genome assembly of wine grapes. Front. Plant Sci. 8:826. doi: 10.3389/fpls.2017.00826.
  • Moreno-Sanz, P., B. Suárez, and M.D. Loureiro. 2008. Identification of synonyms and homonyms in grapevine cultivars (Vitis vinifera L.) from Asturias (Spain). J. Hortic. Sci. Biotechnol. 83(6):683–688. doi: 10.1080/14620316.2008.11512444.
  • Najafi, J., B. Ghareyazie, S.A. Mohammadi, A. Hagh Nazari, and P. This. 2006. Genetic diversity of Iranian and some of European grapes revealed by microsatellite markers. Iran. J. Biotechnol. 4:36–44.
  • Olmo, H.P. 1976. Grape, p. 294–298. In: N.W. Simmonds (ed.). Evol crop plant. Longman, London.
  • Peakall, R., and P.E. Smouse. 2006. GENALEX 6: Genetic analysis in Excel. Population genetic software for teaching and research. Mol. Ecol. Notes 6:288–295. doi: 10.1093/bioinformatics/bts460.
  • R Core Team. 2018. R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. http://www.R-project.org/.
  • Ramezani, A., R. Haddad, and M. Dorostkar. 2009. Genetic diversity of grapevine accessions from Iran, Russia and USA using microsatellite markers. Pak. J. Biol. Sci. 12:152–157. doi: 10.3923/pjbs.2009.152.157.
  • Regner, F., R. Hack, and J.L. Santiago. 2006. Highly variable Vitis microsatellite loci for the identification of Pinot Noir clones. Vitis 45(2):85–91.
  • Riaz, S., G. De Lorenzis, D. Velasco, A. Koehmstedt, D. Maghradze, Z. Bobokashvili, M. Musayev, G. Zdunic, V. Laucou, M.A. Walker, et al. 2018. Genetic diversity analysis of cultivated and wild grapevine (Vitis vinifera L.) accessions around the Mediterranean basin and Central Asia. BMC Plant Biol. 18:137. doi: 10.1186/s12870-018-1351-0.
  • Roder, M.S., V. Korzun, K. Wendehake, J. Plaschke, M.H. Tixier, and M.W. Gamal. 1998. A microsatellite map of wheat. Genetics 149:2007–2023.
  • Rohlf, F. 2006. NTSYSpc: Numerical taxonomy system (ver. 2.2). Exeter Publishing, Ltd, Setauket.
  • Sabir, A., H. Ikten, N. Mutlu, and D. Sari. 2017. Genetic identification and conservation of local Turkish grapevine (Vitis vinifera L.) genotypes on the edge of extinction. Erwerbs-Obstbau 60(1):31–38. doi: 10.1007/s10341-017-0335-9.
  • Sefc, K.M., M.S. Lopes, F. Lefort, R. Botta, K.A. Roubelakis-Angelakis, J. Ibáñez, I. Pejic, H.W. Wagner, J. Glössl, and H. Steinkellner. 2000. Microsatellite variability in grapevine cultivars from different European regions and evaluation of assignment testing to assess the geographic origin of cultivars. Theor. Appl. Genet. 100:498–505. doi: 10.1007/s001220050065.
  • Sefc, K.M., F. Regner, E. Turetschek, J. Glossl, and H. Steinkellner. 1999. Identification of microsatellite sequences in Vitis riparia and their applicability for genotyping of different Vitis species. Genome 42:367–373. doi: 10.1139/g98-168.
  • Silvestroni, O., D.D. Pietro, C. Intrieri, R. Vignani, and M. Crestl. 1997. Detection of genetic diversity among clones of cv. Fortana (Vitis vinifera L.) by microsatellite DNA polymorphism analysis. Vitis 336:147–150.
  • This, P., T. Lacombe, and M.R. Thomas. 2006. Historical origins and genetic diversity of wine grapes. Trends Genet. 22(9):511–519. doi: 10.1016/j.tig.2006.07.008.
  • Thomas, M.R., P. Cain, and N.S. Scott. 1994. DNA typing of grapevines: A universal methodology and database for describing cultivars and evaluating genetic relatedness. Plant Mol. Biol. 25:939–949. doi: 10.1007/BF00014668.
  • Thomas, M.R., and N.S. Scott. 1993. Microsatellite repeats in grapevine reveal DNA polymorphisms when analyzed as sequence tagged sites (STSs). Theor. Appl. Genet. 86:985–990. doi: 10.1007/BF00211051.
  • Tibshirani, R., G. Walther, and T. Hastie. 2001. Estimating the number of clusters in a data set via the gap statistic. J. R. Stat. Soc. B. (Stat. Methodol.) 63:411–423. doi: 10.1111/1467-9868.00293.
  • Wickham, H., W. Chang, L. Henry, T.L. Pedersen, K. Takahashi, C. Wilke, and K. Woo. 2019. ggplot2: Create elegant data visualisations using the grammar of graphics. R package version 3.1.1. 7 April 2019. https://cran.r-project.org/package=ggplot2.
  • Yaghuti, A.A., A. Movahedi, K. Mohammadi, Q. Zhuge, and H. Li. 2018. Genetic diversity among a collection of L. chinense germplasm analyzed with SSR markers. J. Biochem. Microb. Toxicol 1(1):102.

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