Lysosomal putative RNA transporter SIDT2 mediates direct uptake of RNA by lysosomes

References

• Mizushima N, Komatsu M. Autophagy: renovation of cells and tissues. Cell 2011; 147:728-41; PMID:22078875; http://dx.doi.org/10.1016/j.cell.2011.10.026
   PubMed Web of Science ®Google Scholar
• Kaushik S, Cuervo AM. Methods to monitor chaperone-mediated autophagy. Methods Enzymol 2009; 452:297-324; PMID:19200890; http://dx.doi.org/10.1016/S0076-6879(08)03619-7
   PubMed Web of Science ®Google Scholar
• Fujiwara Y, Furuta A, Kikuchi H, Aizawa S, Hatanaka Y, Konya C, Uchida K, Yoshimura A, Tamai Y, Wada K, et al. Discovery of a novel type of autophagy targeting RNA. Autophagy 2013; 9:403-9; PMID:23291500; http://dx.doi.org/10.4161/auto.23002
   PubMed Web of Science ®Google Scholar
• Fujiwara Y, Kikuchi H, Aizawa S, Furuta A, Hatanaka Y, Konya C, Uchida K, Wada K, Kabuta T. Direct uptake and degradation of DNA by lysosomes. Autophagy 2013; 9:1167-71; http://dx.doi.org/10.4161/auto.24880
   PubMed Web of Science ®Google Scholar
• Fujiwara Y, Hase K, Wada K, Kabuta T. An RNautophagy/DNautophagy receptor, LAMP2C, possesses an arginine-rich motif that mediates RNA/DNA-binding. Biochem Biophys Res Commun 2015; 460:281-6; PMID:25772617; http://dx.doi.org/10.1016/j.bbrc.2015.03.025
   PubMed Web of Science ®Google Scholar
• Hase K, Fujiwara Y, Kikuchi H, Aizawa S, Hakuno F, Takahashi S, Wada K, Kabuta T. RNautophagy/DNautophagy possesses selectivity for RNA/DNA substrates. Nucleic Acids Res 2015; 43:6439-49; PMID:26038313; http://dx.doi.org/10.1093/nar/gkv579
   PubMed Web of Science ®Google Scholar
• Carbon S, Ireland A, Mungall CJ, Shu S, Marshall B, Lewis S. AmiGO: online access to ontology and annotation data. Bioinformatics 2009; 25:288-9; PMID:19033274; http://dx.doi.org/10.1093/bioinformatics/btn615
   PubMed Web of Science ®Google Scholar
• Feinberg EH, Hunter CP. Transport of dsRNA into cells by the transmembrane protein SID-1. Science 2003; 301:1545-7; PMID:12970568; http://dx.doi.org/10.1126/science.1087117
   PubMed Web of Science ®Google Scholar
• Shih JD, Hunter CP. SID-1 is a dsRNA-selective dsRNA-gated channel. RNA 2011; 17:1057-65; PMID:21474576; http://dx.doi.org/10.1261/rna.2596511
   PubMed Web of Science ®Google Scholar
• Duxbury MS, Ashley SW, Whang EE. RNA interference: a mammalian SID-1 homologue enhances siRNA uptake and gene silencing efficacy in human cells. Biochem Biophys Res Commun 2005; 331:459-63; PMID:15850781; http://dx.doi.org/10.1016/j.bbrc.2005.03.199
   PubMed Web of Science ®Google Scholar
• Elhassan MO, Christie J, Duxbury MS. Homo sapiens systemic RNA interference-defective-1 transmembrane family member 1 (SIDT1) protein mediates contact-dependent small RNA transfer and microRNA-21-driven chemoresistance. J Biol Chem 2012; 287:5267-77; PMID:22174421; http://dx.doi.org/10.1074/jbc.M111.318865
   PubMed Web of Science ®Google Scholar
• Wu C, Orozco C, Boyer J, Leglise M, Goodale J, Batalov S, Hodge CL, Haase J, Janes J, Huss JW, 3rd, et al. BioGPS: an extensible and customizable portal for querying and organizing gene annotation resources. Genome Biol 2009; 10:R130; PMID:19919682; http://dx.doi.org/10.1186/gb-2009-10-11-r130
   PubMed Web of Science ®Google Scholar
• Jialin G, Xuefan G, Huiwen Z. SID1 transmembrane family, member 2 (Sidt2): a novel lysosomal membrane protein. Biochem Biophys Res Commun 2010; 402:588-94; PMID:20965152; http://dx.doi.org/10.1016/j.bbrc.2010.09.133
   PubMed Web of Science ®Google Scholar
• Chapel A, Kieffer-Jaquinod S, Sagne C, Verdon Q, Ivaldi C, Mellal M, Thirion J, Jadot M, Bruley C, Garin J, et al. An extended proteome map of the lysosomal membrane reveals novel potential transporters. Mol Cell Proteomics 2013; 12:1572-88; PMID:23436907; http://dx.doi.org/10.1074/mcp.M112.021980
   PubMed Web of Science ®Google Scholar
• Schroder B, Wrocklage C, Pan C, Jager R, Kosters B, Schafer H, Elsässer HP, Mann M, Hasilik A. Integral and associated lysosomal membrane proteins. Traffic 2007; 8:1676-86; http://dx.doi.org/10.1111/j.1600-0854.2007.00643.x
   PubMed Web of Science ®Google Scholar
• Humphries WHT, Szymanski CJ, Payne CK. Endo-lysosomal vesicles positive for Rab7 and LAMP1 are terminal vesicles for the transport of dextran. PLoS One 2011; 6:e26626; http://dx.doi.org/10.1371/journal.pone.0026626
   Google Scholar
• Bucci C, Thomsen P, Nicoziani P, McCarthy J, van Deurs B. Rab7: a key to lysosome biogenesis. Mol Biol Cell 2000; 11:467-80; PMID:10679007; http://dx.doi.org/10.1091/mbc.11.2.467
   PubMed Web of Science ®Google Scholar
• Zhang M, Dwyer NK, Neufeld EB, Love DC, Cooney A, Comly M, Patel S, Watari H, Strauss JF, 3rd, Pentchev PG, et al. Sterol-modulated glycolipid sorting occurs in niemann-pick C1 late endosomes. J Biol Chem 2001; 276:3417-25; PMID:11032830; http://dx.doi.org/10.1074/jbc.M005393200
   PubMed Web of Science ®Google Scholar
• Winston WM, Molodowitch C, Hunter CP. Systemic RNAi in C. elegans requires the putative transmembrane protein SID-1. Science 2002; 295:2456-9; PMID:11834782; http://dx.doi.org/10.1126/science.1068836
   PubMed Web of Science ®Google Scholar
• Klionsky DJ, Abdalla FC, Abeliovich H, Abraham RT, Acevedo-Arozena A, Adeli K, Agholme L, Agnello M, Agostinis P, Aguirre-Ghiso JA, et al. Guidelines for the use and interpretation of assays for monitoring autophagy. Autophagy 2012; 8:445-544; PMID:22966490; http://dx.doi.org/10.4161/auto.19496
   PubMed Web of Science ®Google Scholar
• Pratt AJ, Rambo RP, Lau PW, MacRae IJ. Preparation and characterization of the extracellular domain of human Sid-1. PLoS One 2012; 7:e33607; PMID:22509261; http://dx.doi.org/10.1371/journal.pone.0033607
   PubMedGoogle Scholar
• Pei J, Millay DP, Olson EN, Grishin NV. CREST-a large and diverse superfamily of putative transmembrane hydrolases. Biol Direct 2011; 6:37; http://dx.doi.org/10.1186/1745-6150-6-37
   PubMed Web of Science ®Google Scholar
• Huang H, Kawamata T, Horie T, Tsugawa H, Nakayama Y, Ohsumi Y, Fukusaki E. Bulk RNA degradation by nitrogen starvation-induced autophagy in yeast. EMBO J 2015; 34:154-68; PMID:25468960; http://dx.doi.org/10.15252/embj.201489083
   PubMed Web of Science ®Google Scholar
• Xu J, Yoshimura K, Mon H, Li Z, Zhu L, Iiyama K, Kusakabe T, Lee JM. Establishment of Caenorhabditis elegans SID-1-dependent DNA delivery system in cultured silkworm cells. Mol Biotechnol 2014; 56:193-8; PMID:23979877; http://dx.doi.org/10.1007/s12033-013-9694-0
   PubMed Web of Science ®Google Scholar
• Houseley J, Tollervey D. The many pathways of RNA degradation. Cell 2009; 136:763-76; http://dx.doi.org/10.1016/j.cell.2009.01.019
   PubMed Web of Science ®Google Scholar
• Sahu R, Kaushik S, Clement CC, Cannizzo ES, Scharf B, Follenzi A, Potolicchio I, Nieves E, Cuervo AM, Santambrogio L. Microautophagy of cytosolic proteins by late endosomes. Developmental Cell 2011; 20:131-9; PMID:21238931; http://dx.doi.org/10.1016/j.devcel.2010.12.003
   PubMed Web of Science ®Google Scholar
• Gao J, Gu X, Mahuran DJ, Wang Z, Zhang H. Impaired glucose tolerance in a mouse model of sidt2 deficiency. PLoS One 2013; 8:e66139; PMID:23776622; http://dx.doi.org/10.1371/journal.pone.0066139
   PubMedGoogle Scholar
• Kuma A, Hatano M, Matsui M, Yamamoto A, Nakaya H, Yoshimori T, Ohsumi Y, Tokuhisa T, Mizushima N. The role of autophagy during the early neonatal starvation period. Nature 2004; 432:1032-6; http://dx.doi.org/10.1038/nature03029
   PubMed Web of Science ®Google Scholar
• Cordelieres FP, Bolte S. JACoP v2.0: improving the user experience with co-localization studies. Proceedings of the 2nd ImageJ User and Developer Conference 2008:174-81.
   Google Scholar
• Kabuta T, Setsuie R, Mitsui T, Kinugawa A, Sakurai M, Aoki S, Uchida K, Wada K. Aberrant molecular properties shared by familial Parkinson's disease-associated mutant UCH-L1 and carbonyl-modified UCH-L1. Hum Mol Genet 2008; 17:1482-96; http://dx.doi.org/10.1093/hmg/ddn037
   PubMed Web of Science ®Google Scholar
• Kabuta T, Mitsui T, Takahashi M, Fujiwara Y, Kabuta C, Konya C, Tsuchiya Y, Hatanaka Y, Uchida K, Hohjoh H, et al. Ubiquitin C-terminal Hydrolase L1 (UCH-L1) Acts as a Novel potentiator of cyclin-dependent kinases to enhance cell proliferation independently of its hydrolase activity. J Biol Chem 2013; 288:12615-26; PMID:23543736; http://dx.doi.org/10.1074/jbc.M112.435701
   PubMed Web of Science ®Google Scholar
• Kabuta T, Suzuki Y, Wada K. Degradation of amyotrophic lateral sclerosis-linked mutant Cu,Zn-superoxide dismutase proteins by macroautophagy and the proteasome. J Biol Chem 2006; 281:30524-33; PMID:16920710; http://dx.doi.org/10.1074/jbc.M603337200
   PubMed Web of Science ®Google Scholar
• Sameshima M, Liebhaber SA, Schlessinger D. Dual pathways for ribonucleic acid turnover in WI-38 but not in I-cell human diploid fibroblasts. Mol Cell Biol 1981; 1:75-81; PMID:6086007; http://dx.doi.org/10.1128/MCB.1.1.75
   PubMed Web of Science ®Google Scholar
• Hiraoka N, Kikuchi J, Yamauchi T, Koyama D, Wada T, Uesawa M, Akutsu M, Mori S, Nakamura Y, Ueda T, et al. Purine analog-like properties of bendamustine underlie rapid activation of DNA damage response and synergistic effects with pyrimidine analogues in lymphoid malignancies. PLoS One 2014; 9:e90675; PMID:24626203; http://dx.doi.org/10.1371/journal.pone.0090675
   PubMed Web of Science ®Google Scholar
• Daniel JL, Molish IR, Holmsen H. Radioactive labeling of the adenine nucleotide pool of cells as a method to distinguish among intracellular compartments. Studies on human platelets. Biochimica Et Biophysica Acta 1980; 632:444-53; PMID:7417532; http://dx.doi.org/10.1016/0304-4165(80)90240-8
   PubMed Web of Science ®Google Scholar
• Garden GA, Hartlage-Rubsamen M, Rubel EW, Bothwell MA. Protein masking of a ribosomal RNA epitope is an early event in afferent deprivation-induced neuronal death. Mol Cell Neurosci 1995; 6:293-310; PMID:7496633; http://dx.doi.org/10.1006/mcne.1995.1023
   PubMed Web of Science ®Google Scholar