2,545
Views
14
CrossRef citations to date
0
Altmetric
Research Paper

Actin filaments are dispensable for bulk autophagy in plants

ORCID Icon, , , , , , , ORCID Icon & ORCID Icon show all
Pages 2126-2141 | Received 28 Nov 2018, Accepted 01 Mar 2019, Published online: 31 Mar 2019

References

  • Dikic I. Proteasomal and autophagic degradation systems. Annu Rev Biochem. 2017 Jun 20;86:193–224. PubMed PMID: 28460188.
  • Xie Z, Klionsky DJ. Autophagosome formation: core machinery and adaptations. Nat Cell Biol. 2007 Oct;9(10):1102–1109. PubMed PMID: 17909521.
  • Rabinowitz JD, White E. Autophagy and metabolism. Science. 2010 Dec 3;330(6009):1344–1348. PubMed PMID: 21127245; PubMed Central PMCID: PMCPMC3010857.
  • Ohsumi Y. Molecular dissection of autophagy: two ubiquitin-like systems. Nat Rev Mol Cell Biol. 2001 Mar;2(3):211–216. PubMed PMID: 11265251.
  • Liu Y, Bassham DC. Autophagy: pathways for self-eating in plant cells. Annu Rev Plant Biol. 2012;63:215–237. PubMed PMID: 22242963.
  • Marshall RS, Vierstra RD. Autophagy: the master of bulk and selective recycling. Annu Rev Plant Biol. 2018 Apr 29;69:173–208. PubMed PMID: 29539270.
  • Avin-Wittenberg T, Fernie AR. At long last: evidence for pexophagy in plants. Mol Plant. 2014 Aug;7(8):1257–1260. PubMed PMID: WOS:000340438200001.
  • Bassham DC. Plant autophagy-more than a starvation response. Curr Opin Plant Biol. 2007 Dec;10(6):587–593. PubMed PMID: WOS:000251635800008.
  • Doelling JH, Walker JM, Friedman EM, et al. The APG8/12-activating enzyme APG7 is required for proper nutrient recycling and senescence in Arabidopsis thaliana. J Biol Chem. 2002 Sep 6;277(36):33105–33114. PubMed PMID: WOS:000177859000092.
  • Hanaoka H, Noda T, Shirano Y, et al. Leaf senescence and starvation-induced chlorosis are accelerated by the disruption of an Arabidopsis autophagy gene. Plant Physiol. 2002 Jul;129(3):1181–1193. PubMed PMID: 12114572; PubMed Central PMCID: PMCPMC166512.
  • Haxim Y, Ismayil A, Jia Q, et al. Autophagy functions as an antiviral mechanism against geminiviruses in plants. Elife. 2017 Feb 28;6. PubMed PMID: WOS:000397642200001. DOI:10.7554/eLife.23897.
  • Ishida H, Izumi M, Wada S, et al. Roles of autophagy in chloroplast recycling. Biochim Biophys Acta. 2014 Apr;1837(4):512–521. PubMed PMID: 24269172.
  • Liu YM, Xiong Y, Bassham DC. Autophagy is required for tolerance of drought and salt stress in plants. Autophagy. 2009 Oct 1;5(7):954–963. PubMed PMID: WOS:000272691100005.
  • Wang Y, Yu B, Zhao J, et al. Autophagy contributes to leaf starch degradation. Plant Cell. 2013 Apr;25(4):1383–1399. PubMed PMID: 23564204; PubMed Central PMCID: PMC3663275.
  • Wang Y, Zheng X, Yu B, et al. Disruption of microtubules in plants suppresses macroautophagy and triggers starch excess-associated chloroplast autophagy. Autophagy. 2015;11(12):2259–2274. PubMed PMID: 26566764; PubMed Central PMCID: PMCPMC4835195.
  • Liu Y, Schiff M, Czymmek K, et al. Autophagy regulates programmed cell death during the plant innate immune response. Cell. 2005;121(4):567–577. PubMed PMID: 15907470
  • Winder SJ, Ayscough KR. Actin-binding proteins. J Cell Sci. 2005 Feb 15;118(Pt 4):651–654. PubMed PMID: 15701920.
  • Reggiori F, Monastyrska I, Shintani T, et al. The actin cytoskeleton is required for selective types of autophagy, but not nonspecific autophagy, in the yeast Saccharomyces cerevisiae. Mol Biol Cell. 2005 Dec;16(12):5843–5856. PubMed PMID: 16221887; PubMed Central PMCID: PMCPMC1289426.
  • Hamasaki M, Noda T, Baba M, et al. Starvation triggers the delivery of the endoplasmic reticulum to the vacuole via autophagy in yeast. Traffic. 2005 Jan;6(1):56–65. PubMed PMID: 15569245.
  • Monastyrska I, He C, Geng J, et al. Arp2 links autophagic machinery with the actin cytoskeleton. Mol Biol Cell. 2008 May;19(5):1962–1975. PubMed PMID: 18287533; PubMed Central PMCID: PMCPMC2366845.
  • Monastyrska I, Rieter E, Klionsky DJ, et al. Multiple roles of the cytoskeleton in autophagy. Biol Rev Camb Philos Soc. 2009 Aug;84(3):431–448. PubMed PMID: 19659885; PubMed Central PMCID: PMCPMC2831541.
  • Kast DJ, Dominguez R. The cytoskeleton-autophagy connection. Curr Biol. 2017 Apr 24;27(8):R318–R326. PubMed PMID: 28441569; PubMed Central PMCID: PMCPMC5444402.
  • Mi N, Chen Y, Wang S, et al. CapZ regulates autophagosomal membrane shaping by promoting actin assembly inside the isolation membrane. Nat Cell Biol. 2015 Sep;17(9):1112–1123. PubMed PMID: 26237647.
  • Lee JY, Koga H, Kawaguchi Y, et al. HDAC6 controls autophagosome maturation essential for ubiquitin-selective quality-control autophagy. Embo J. 2010 Mar 3;29(5):969–980. PubMed PMID: 20075865; PubMed Central PMCID: PMC2837169.
  • Mostowy S, Sancho-Shimizu V, Hamon MA, et al. p62 and NDP52 proteins target intracytosolic shigella and listeria to different autophagy pathways. J Biol Chem. 2011 Jul 29;286(30):26987–26995. PubMed PMID: 21646350; PubMed Central PMCID: PMCPMC3143657.
  • Wang P, Richardson C, Hawes C, et al. Arabidopsis NAP1 regulates the formation of autophagosomes. Curr Biol. 2016 Aug 8;26(15):2060–2069. PubMed PMID: 27451899.
  • Baluska F, Jasik J, Edelmann HG, et al. Latrunculin B-induced plant dwarfism: plant cell elongation is F-actin-dependent. Dev Biol. 2001 Mar 1;231(1):113–124. PubMed PMID: 11180956.
  • Palevitz BA. Cytochalasin-induced reorganization of actin in allium root-cells. Cell Motil Cytoskel. 1988;9(4):283–298. PubMed PMID: WOS:A1988N533200001.
  • Sheahan MB, Staiger CJ, Rose RJ, et al. A green fluorescent protein fusion to actin-binding domain 2 of Arabidopsis fimbrin highlights new features of a dynamic actin cytoskeleton in live plant cells. Plant Physiol. 2004 Dec;136(4):3968–3978. PubMed PMID: 15557099; PubMed Central PMCID: PMCPMC535829.
  • Le Bars R, Marion J, Le Borgne R, et al. ATG5 defines a phagophore domain connected to the endoplasmic reticulum during autophagosome formation in plants. Nat Commun. 2014 Jun 20;5:4121. PubMed PMID: 24947672.
  • Luo LM, Zhang PP, Zhu RH, et al. Autophagy is rapidly induced by salt stress and is required for salt tolerance in Arabidopsis. Front Plant Sci. 2017 Aug 22;8. PubMed PMID: WOS:000408210500001. DOI:10.3389/fpls.2017.01459.
  • Fan TT, Zhai HH, Shi WW, et al. Overexpression of profilin 3 affects cell elongation and F-actin organization in Arabidopsis thaliana. Plant Cell Rep. 2013 Jan;32(1):149–160. PubMed PMID: WOS:000313009000013.
  • Kim J, Lee H, Lee HN, et al. Autophagy-related proteins are required for degradation of peroxisomes in Arabidopsis hypocotyls during seedling growth. Plant Cell. 2013 Dec;25(12):4956–4966. PubMed PMID: 24368791; PubMed Central PMCID: PMC3903998.
  • Kandasamy MK, Meagher RB. Actin-organelle interaction: association with chloroplast in arabidopsis leaf mesophyll cells. Cell Motil Cytoskeleton. 1999 Oct;44(2):110–118. PubMed PMID: 10506746.
  • Grebe M, Xu J, Mobius W, et al. Arabidopsis sterol endocytosis involves actin-mediated trafficking via ARA6-positive early endosomes. Curr Biol. 2003 Aug 19;13(16):1378–1387. PubMed PMID: 12932321.
  • Liu Y, Schiff M, Dinesh-Kumar SP. Virus-induced gene silencing in tomato. Plant J. 2002 Sep;31(6):777–786. PubMed PMID: 12220268.
  • Boevink P, Oparka K, Santa Cruz S, et al. Stacks on tracks: the plant Golgi apparatus traffics on an actin/ER network. Plant J. 1998 Aug;15(3):441–447. PubMed PMID: 9750355.
  • Sparkes I, Runions J, Hawes C, et al. Movement and remodeling of the endoplasmic reticulum in nondividing cells of tobacco leaves. Plant Cell. 2009 Dec;21(12):3937–3949. PubMed PMID: 20040535; PubMed Central PMCID: PMCPMC2814503.
  • Nelson BK, Cai X, Nebenfuhr A. A multicolored set of in vivo organelle markers for co-localization studies in Arabidopsis and other plants. Plant J. 2007 Sep;51(6):1126–1136. PubMed PMID: 17666025.
  • Wang S, Xie K, Xu G, et al. Plant G proteins interact with endoplasmic reticulum luminal protein receptors to regulate endoplasmic reticulum retrieval. J Integr Plant Biol. 2018 Jul;60(7):541–561. PubMed PMID: 29573168.
  • Zhou J, Wang J, Cheng Y, et al. NBR1-mediated selective autophagy targets insoluble ubiquitinated protein aggregates in plant stress responses. PLoS Genet. 2013;9(1):e1003196. PubMed PMID: 23341779; PubMed Central PMCID: PMC3547818.
  • Xu G, Wang S, Han S, et al. Plant bax inhibitor-1 interacts with ATG6 to regulate autophagy and programmed cell death. Autophagy. 2017 Jul 3;13(7):1161–1175. PubMed PMID: 28537463; PubMed Central PMCID: PMCPMC5529081.
  • Levine B, Klionsky DJ. Development by self-digestion: molecular mechanisms and biological functions of autophagy. Dev Cell. 2004 Apr;6(4):463–477. PubMed PMID: 15068787.
  • Ogata M, Hino S, Saito A, et al. Autophagy is activated for cell survival after endoplasmic reticulum stress. Mol Cell Biol. 2006 Dec;26(24):9220–9231. PubMed PMID: 17030611; PubMed Central PMCID: PMCPMC1698520.
  • Liu Y, Burgos JS, Deng Y, et al. Degradation of the endoplasmic reticulum by autophagy during endoplasmic reticulum stress in Arabidopsis. Plant Cell. 2012 Nov;24(11):4635–4651. PubMed PMID: 23175745; PubMed Central PMCID: PMCPMC3531857.
  • Shintani T, Klionsky DJ. Cargo proteins facilitate the formation of transport vesicles in the cytoplasm to vacuole targeting pathway. J Biol Chem. 2004 Jul 16;279(29):29889–29894. PubMed PMID: 15138258; PubMed Central PMCID: PMCPMC1712665.
  • Shin KD, Lee HN, Chung T. A revised assay for monitoring autophagic flux in Arabidopsis thaliana reveals involvement of AUTOPHAGY-RELATED9 in autophagy. Mol Cells. 2014 May;37(5):399–405. PubMed PMID: 24805779; PubMed Central PMCID: PMCPMC4044311.
  • Bassham DC. Methods for analysis of autophagy in plants. Methods. 2015 Mar;75:181–188. PubMed PMID: 25239736.
  • Marshall RS, Li FQ, Gemperline DC, et al. Autophagic degradation of the 26S proteasome is mediated by the dual ATG8/Ubiquitin receptor RPN10 in Arabidopsis. Mol Cell. 2015 Jun 18;58(6):1053–1066. PubMed PMID: WOS:000360986700017.
  • Ustun S, Hafren A, Liu Q, et al. Bacteria exploit autophagy for proteasome degradation and enhanced virulence in plants. Plant Cell. 2018 Mar;30(3):668–685. PubMed PMID: 29500318; PubMed Central PMCID: PMCPMC5894834.
  • Klionsky DJ, Abdalla FC, Abeliovich H, et al. Guidelines for the use and interpretation of assays for monitoring autophagy. Autophagy 2012 Apr;8(4):445–544. PubMed PMID: 22966490; PubMed Central PMCID: PMC3404883.
  • Ni HM, Bockus A, Wozniak AL, et al. Dissecting the dynamic turnover of GFP-LC3 in the autolysosome. Autophagy. 2011 Feb;7(2):188–204. PubMed PMID: 21107021; PubMed Central PMCID: PMCPMC3039769.54.
  • Ueda H, Yokota E, Kutsuna N, et al. Myosin-dependent endoplasmic reticulum motility and F-actin organization in plant cells. Proc Natl Acad Sci U S A. 2010 Apr 13;107(15):6894–6899. PubMed PMID: 20351265; PubMed Central PMCID: PMCPMC2872430.
  • Zhao JP, Liu Q, Zhang HL, et al. The rubisco small subunit is involved in tobamovirus movement and Tm-2(2)-mediated extreme resistance. Plant Physiol. 2013 Jan;161(1):374–383. PubMed PMID: WOS:000312964000030.
  • Liu Y, Burch-Smith T, Schiff M, et al. Molecular chaperone Hsp90 associates with resistance protein N and its signaling proteins SGT1 and Rar1 to modulate an innate immune response in plants. J Biol Chem. 2004 Jan 16;279(3):2101–2108. PubMed PMID: 14583611.

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.