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Addendum

Quantitative proteomic analysis of temporal lysosomal proteome and the impact of the KFERQ-like motif and LAMP2A in lysosomal targeting

, , , &
Pages 3865-3874 | Received 04 Nov 2020, Accepted 11 Jan 2021, Published online: 26 Jan 2021

References

  • Mizushima N, Komatsu M. Autophagy: renovation of cells and tissues. Cell. 2011 Nov 11;147(4):728–741.
  • Tekirdag K, Cuervo AM. Chaperone-mediated autophagy and endosomal microautophagy: joint by a chaperone. J Biol Chem. 2018 Apr 13;293(15):5414–5424.
  • Orenstein SJ, Cuervo AM. Chaperone-mediated autophagy: molecular mechanisms and physiological relevance. Semin Cell Dev Biol. 2010 Sep;21(7):719–726.
  • Vakifahmetoglu-Norberg H, Kim M, Xia HG, et al. Chaperone-mediated autophagy degrades mutant p53. Genes Dev. 2013 Aug 1;27(15):1718–1730.
  • Xia HG, Najafov A, Geng J, et al. Degradation of HK2 by chaperone-mediated autophagy promotes metabolic catastrophe and cell death. J Cell Biol. 2015 Aug 31;210(5):705–716.
  • Hao Y, Kacal M, Ouchida AT, et al. Targetome analysis of chaperone-mediated autophagy in cancer cells. Autophagy. 2019 Mar 1;15(9):1558–1571.
  • Park C, Suh Y, Cuervo AM. Regulated degradation of Chk1 by chaperone-mediated autophagy in response to DNA damage. Nat Commun. 2015 Apr 16;6:6823. .
  • Mejlvang J, Olsvik H, Svenning S, et al. Starvation induces rapid degradation of selective autophagy receptors by endosomal microautophagy. J Cell Biol. 2018 Oct 1;217(10):3640–3655.
  • Kristensen AR, Schandorff S, Hoyer-Hansen M, et al. Ordered organelle degradation during starvation-induced autophagy. Mol Cell Proteomics. 2008 Dec 7;(12):2419–2428. DOI:10.1074/mcp.M800184-MCP200
  • Gretzmeier C, Eiselein S, Johnson GR, et al. Degradation of protein translation machinery by amino acid starvation-induced macroautophagy. Autophagy. 2017 Jun 3;13(6):1064–1075.
  • He C, Klionsky DJ. Regulation mechanisms and signaling pathways of autophagy. Annu Rev Genet. 2009;43:67–93.
  • Kroemer G, Marino G, Levine B. Autophagy and the integrated stress response. Mol Cell. 2010 Oct 22;40(2):280–293.
  • Peng T, Golub TR, Sabatini DM. The immunosuppressant rapamycin mimics a starvation-like signal distinct from amino acid and glucose deprivation. Mol Cell Biol. 2002 Aug;22(15):5575–5584.
  • Vander Heiden MG, DeBerardinis RJ. Understanding the intersections between metabolism and cancer biology. Cell. 2017 Feb 9;168(4):657–669.
  • Gallipoli P, Giotopoulos G, Tzelepis K, et al. Glutaminolysis is a metabolic dependency in FLT3(ITD) acute myeloid leukemia unmasked by FLT3 tyrosine kinase inhibition. Blood. 2018 Apr 12;131(15):1639–1653.
  • Liu J, Xia H, Kim M, et al. Beclin1 controls the levels of p53 by regulating the deubiquitination activity of USP10 and USP13. Cell. 2011 Sep 30;147(1):223–234.
  • Vakifahmetoglu-Norberg H, Xia HG, Yuan J. Pharmacologic agents targeting autophagy. J Clin Invest. 2015 Jan;125(1):5–13.
  • Niwa T, Ying BW, Saito K, et al. Bimodal protein solubility distribution revealed by an aggregation analysis of the entire ensemble of Escherichia coli proteins. Proc Natl Acad Sci U S A. 2009 Mar 17;106(11):4201–4206.
  • Wang T, Tang H. The physical characteristics of human proteins in different biological functions. PLoS One. 2017;12(5):e0176234.
  • Lee AS. Mammalian stress response: induction of the glucose-regulated protein family. Curr Opin Cell Biol. 1992 Apr;4(2):267–273. DOI:10.1016/0955-0674(92)90042-B
  • Schneider JL, Suh Y, Cuervo AM. Deficient chaperone-mediated autophagy in liver leads to metabolic dysregulation. Cell Metab. 2014 Sep 2;20(3):417–432.
  • Kirchner P, Bourdenx M, Madrigal-Matute J, et al. Proteome-wide analysis of chaperone-mediated autophagy targeting motifs. PLoS Biol. 2019 May;17(5):e3000301. .
  • Dice JF. Peptide sequences that target cytosolic proteins for lysosomal proteolysis. Trends Biochem Sci. 1990 Aug;15(8):305–309.
  • Mukherjee A, Patel B, Koga H, et al. Selective endosomal microautophagy is starvation-inducible in drosophila. Autophagy. 2016 Nov;12(11):1984–1999. .
  • Kaushik S, Cuervo AM. The coming of age of chaperone-mediated autophagy. Nat Rev Mol Cell Biol. 2018 Apr 6;19(6):365–381.
  • Sahu R, Kaushik S, Clement CC, et al. Microautophagy of cytosolic proteins by late endosomes. Dev Cell. 2011 Jan 18;20(1):131–139.
  • Ritchie ME, Phipson B, Wu D, et al. limma powers differential expression analyses for RNA-sequencing and microarray studies. Nucleic Acids Res. 2015 Apr 20;43(7):e47.
  • Yu G, He QY. ReactomePA: an R/Bioconductor package for reactome pathway analysis and visualization. Mol Biosyst. 2016 Feb;12(2):477–479.