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Mycologia Volume 94, 2002 - Issue 5
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Original Articles

Phylogenetic relationships of the downy mildews (Peronosporales) and related groups based on nuclear large subunit ribosomal DNA sequences

A. Riethmüller Lehrstuhl für Spezielle Botanik und Mykologie, Botanisches Institut, Universität Tübingen, Auf der Morgenstelle 1, D-72076 Tübingen, Germany
,
H. Voglmayr Institut für Botanik, Universität Wien, Rennweg 14, A-1030 Wien, Austria
,
M. Göker
,
M. Weiß
&
F. Oberwinkler Lehrstuhl für Spezielle Botanik und Mykologie, Botanisches Institut, Universität Tübingen, Auf der Morgenstelle 1, D-72076 Tübingen, Germany
Pages 834-849 | Accepted 15 May 2002, Published online: 31 Jan 2017

  • APG. 1998 An ordinal classification for the families of flowering plants. Ann Missouri Bot Gard 85:531-553
  • Barr DJS., 1983 The zoosporic grouping of plant pathogens. Entity or non-entity?. In: Buczacki ST, ed. Zoosporic plant pathogens, a modern perspective. London: Academic Press. p 43–83
  • Berlese AN., 1902 Saggio di una monographia delle Peronosporacee. Rivista di Patologia Vegetale 9:1-126
  • Brandenburger W., 1985 Parasitische Pilze an Gefäßpflanzen in Europa. Stuttgart: G. Fischer. 1249 p
  • Brasier CM, Hansen EM., 1992 Evolutionary biology of Phytophthora. Part II: phylogeny, speciation, and population structure. Ann Rev Phytopathol 30:173-200
  • Chen CC., 1961 A species of Peronophythora, gen. nov., parasitic on litchi fruit in Taiwan. SpecialPUBLICations, College of Agriculture, National Taiwan University 10:1-37
  • Chi Pei-Kun, Pang Xue-Peng, Liu Ren., 1982 Studies on Phytophthora disease of litchi. I. Identification of causal agent. Proc Annual Meeting Chinese Phytopathol Soc 1981. p 72–73
  • Constantinescu O., 1979 Revision of Bremiella (Peronosporales). Trans Br Mycol Soc 72:510-515
  • ———. 1989 Peronospora complex on Compositae. Sydowia 41:79-107
  • ———. 1991 An annotated list of Peronospora names. Thunbergia 15:1-110
  • ———. 2000 The fine structure of the sporangium in Pseudoperonospora humuli (Chromista, Oomycota, Peronosporales). Crypt Mycol 21:93-101
  • Cooke DEL, Drenth A, Duncan JM, Wagels G, Brasier CM., 2000 A molecular phylogeny of Phytophthora and related Oomycetes. Fungal Gen Biol 30:17-32
  • Dick MW., 1988 Coevolution in the heterokont fungi (with emphasis on the downy mildews and their angiosperm hosts). In: Hawksworth DL, Pirozynski KA, eds. Coevolution of fungi with plants and animals. London: Academic Press. p 31–62
  • ———. 1995 Sexual reproduction in the Peronosporomycetes (chromistan fungi). Can J Bot 73: (Suppl. 1) S712-S724
  • ———. 1999 Classification of the Peronosporomycetes. In: Robinson R, Batt C, Patel P, eds. Encyclopaedia of food microbiology. Vol. 2. London: Acacemic Press. p 871–882
  • ———. 2001a The Peronosporomycetes. In: McLaughlin DJ, McLaughlin EG, Lemke PA, eds. The Mycota. Vol. VII A. Berlin: Springer. p 39–72
  • ———. 2001b Straminipilous fungi. Dordrecht: Kluwer Academic Publishers. 670 p
  • ———, Wong PTW, Clark G., 1984 The identity of the oomycete causing ‘Kikuyu Yellows’, with a reclassification of the downy mildews. Bot J Linn Soc 89:171-197
  • ———, Croft BJ, Magarey RC, De Cock AWAM, Clark G., 1989 A new genus of the Verrucalvaceae (Oomycetes). Bot J Linn Soc 99:97-113
  • ———, Vick MC, Gibbings JG, Hedderson TA, Lopez Lastra CC., 1999 18S rDNA for species of Leptolegnia and other Peronosporomycetes: justification of the subclass taxa Saprolegniomycetidae and Peronosporomycetidae and division of the Saprolegniaceae sensu lato into the Leptolegniaceae and Saprolegniaceae. Mycol Res 103:1119-1125
  • Doyle JJ, Doyle JL., 1987 A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem Bull 19:11-15
  • Felsenstein J., 1985 Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791
  • Fischer A., 1892 Die Pilze Deutschlands, Österreichs und der Schweiz IV. Abteilung Phycomycetes. III. Reihe Oomycetes. In: Rabenhorst L, ed. Kryptogamen-Flora von Deutschland, Österreich und der Schweiz 1. Leipzig: E. Kummer. p 310–490
  • Fitch WM., 1971 Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20:406-416
  • Förster H, Cummings MP, Coffey MD., 2000 Phylogenetic relationship of Phytophthora species based on ribosomal ITS I DNA sequence analysis with emphasis on Waterhouse groups V and VI. Mycol Res 104:1055-1061
  • Fraymouth J., 1956 Haustoria of the Peronosporales. Trans Br Mycol Soc 39:79-107
  • Gäumann E., 1918 Über die Formen der Peronospora parasitica (Pers.) Fries. Beih Biol Zentralblatt 35:395-533
  • ———. 1923 Beiträge zu einer Monographie der Gattung Peronospora Corda. Beitr. Kryptogamenflora Schweiz 5:1-360
  • ———. 1964 Die Pilze. Basel: Birkhäuser. 541 p
  • Gu X, Fu YX, Li WH., 1995 Maximum likelihood estimation of the heterogeneity of substitution rate among nucleotide sites. Mol Biol Evol 12:546-557
  • Gustavsson A., 1959 Studies on nordic peronosporas. I. Taxonomic revision. Opera Bot 3:1-271
  • Hall G., 1989 CMI Descriptions of pathogenic fungi and bacteria no. 974. Peronophythora litchii. Mycopathologia 106:189-190
  • Hawksworth DL, Kirk PM, Sutton BC, Pegler DN., 1995 Ainsworth & Bisby's Dictionary of the Fungi. 8th Ed. Wallingford, UK: CAB International. 616 p
  • Ho HH, Lu Jiayun, Gong Longyin., 1984 Observations on asexual reproduction by Peronophythora litchii. Mycologia 76:745-747
  • Hudspeth DSS, Nadler SA, Hudspeth MES., 2000 A COX2 molecular phylogeny of the Peronosporomycetes. Mycologia 92:674-684
  • Kenneth R, Kranz J., 1973 Plasmopara penniseti sp. nov., a downy mildew of pearl millet in Ethiopia. Trans Br Mycol Soc 60:590-593
  • Ko WH, Chang HS, Su HJ, Chen CC, Leu LS., 1978 Peronophythoraceae, a new family of Peronosporales. Mycologia 70:380-384
  • Kochman J, Majewski T., 1970 Grzyby (Mycota). Glonowce (Phycomycetes). Wroslikowe (Peronosporales) 4. Warszawa: Państwowe Wydawnictwo Naukowe. 309 p
  • Leclerc MC, Guillot J, Deville M., 2000 Taxonomic and phylogenetic analysis of Saprolegniaceae (Oomycetes) inferred from LSU rDNA and ITS sequence comparisons. Antonie van Leeuwenhoek 77:369-377
  • Matsumoto C, Kageyama K, Suga H, Hyakumachi M., 1999 Phylogenetic relationships of Pythium species based on ITS and 5, 8S sequences of the ribosomal DNA. Mycoscience 321–331
  • Moncalvo JM, Wang HH, Hseu RS., 1995 Phylogenetic relationships in Ganoderma inferrred from the internal transcribed spacers and 25S ribosomal DNA sequences. Mycologia 87:223-238
  • Mullis KB, Faloona FA., 1987 Specific synthesis of DNA in vitro via a polymerase-catalyzed chain reaction. Methods Enzymol 155:335-350
  • O'Donnell K., 1993 Fusarium and its near relatives. In: Reynolds DR, Taylor JW, eds. The fungal holomorph: mitotic, meiotic and pleomorphic speciation in fungal systematics. Wallingford, UK: CAB International. p 225–233
  • Petersen AB, Rosendahl S., 2000 Phylogeny of the Peronosporomycetes (Oomycota) based on partial sequences of the large ribosomal subunit (LSU rDNA). Mycol Res 104:1295-1303
  • Posada D, Crandall KA., 1998 MODELTEST: testing the model of DNA substitution. Bioinformatics 14:817-818
  • Rehmany AP, Lynn JR, Tör M, Holub EB, Beynon JL., 2000 A comparison of Peronospora parasitica (downy mildew) isolates from Arabidopsis thaliana and Brassica oleracea using amplified fragment length polymorophism and internal transcribed spacer 1 sequence analyses. Fungal Gen Biol 30:95-103
  • Riethmüller A, Weiß M, Oberwinkler F., 1999 Phylogenetic studies of Saprolegniomycetidae and related groups based on nuclear large subunit DNA sequences. Can J Bot 77:1790-1800
  • Saitou N, Nei M., 1987 The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406-425
  • Savulescu T., 1948 Les especes de Peronospora Corda de la Roumainie. Sydowia 2:255-307
  • Schroeter J., 1889 Die Pilze Schlesiens. In: Cohn F, ed. Kryptogamen-Flora von Schlesien. Vol. 3. Breslau: Kern
  • Shaw CG., 1978 Peronosclerospora species and other downy mildews of the Gramineae. Mycologia 70:594-604
  • ———. 1981 Taxonomy and evolution. In: Spencer DM, ed. The downy mildews. London: Academic Press. p 17–29
  • Skalický V., 1966 Taxonomie der Gattungen der Familie Peronosporaceae. Preslia 38:117-129
  • Skidmore DI, Ingram DS., 1985 Conidial morphology and specialization of Bremia lactucae Regel (Peronosporaceae) on hosts in the family Compositae. Bot J Linn Soc 91:503-522
  • Swofford DL., 2001 PAUP*. Phylogenetic analysis using parsimony (*and other methods), version 4b8. Sunderland, Massachusetts: Sinauer
  • Tamura K, Nei M., 1993 Estimation of the number of nucleotide substitution in the control region of mitochondrial DNA in humans and chimpanzees. Mol Biol Evol 10:512-526
  • Vilgalys R, Hester M., 1990 Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. J Bacteriol 172:4238-4246
  • Waterhouse GM., 1973 Peronosporales. In: Ainsworth GC, Sparrow FK, Sussman AS, eds. The fungi—an advanced treatise. New York: Academic Press. p 165–183
  • ———, Brothers MP., 1981 The taxonomy of Pseudoperonospora. Mycol Papers 148:1-28
  • White TJ, Bruns T, Lee S, Taylor J., 1990 Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In Innis MA, Gelfand H, Sninsky JS, White TJ, (eds.) PCR protocols: a guide to methods and applications. New York: Academic Press. p 315–322
  • Wilson GW., 1907 Studies in North American Peronosporales II. Phytophthorae and Rhysotheceae. Bull Torrey Bot Club 34:387-416
  • Yerkes DRJr,, Shaw CG., 1959 Taxonomy of the Peronospora species on Cruciferae and Chenopodiaceae. Phytopathology 49:499-507

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