The mitochondrial genome of Saprolegnia ferax: organization, gene content and nucleotide sequence

LITERATURE CITED

• Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. 1990. Basic local alignment search tool. J Mol Biol 215:403–410.
   Google Scholar
• Bogsch EG, Sargent F, Stanley NR, Berks BC, Robinson C, Palmer T. 1998. An essential component of a novel bacterial protein export system with homologues in plastids and mitochondria. J Biol Chem 273:18003–18006.
   Google Scholar
• Birnboim HC, Doly J. 1979. A rapid alkaline extraction procedure for screening recombinant plasmid DNA. Nucleic Acids Res 7:1513–1523.
   Google Scholar
• Boyd DA, Hobman TC, Gruenke SA, Klassen GR. 1984. Evolutionary stability of mitochondrial DNA organization in Achlya. Can J Biochem Cell Biol 62:571–576.
   Google Scholar
• Burger G. 1999. GenBank accession No. AF193903.
   Google Scholar
• ———, Lang BF, Gray MW. 2000. GenBank accession No. AF287134.
   Google Scholar
• Chesnick JM, Goff M, Graham J, Ocampo C, Lang BF, Seif E, Burger G. 2000. The mitochondrial genome of the stramenopile alga Chrysodidymus synuroideus. Complete sequence, gene content and genome organization. Nucleic Acids Res 28:2512–2518.
   Google Scholar
• Clark-Walker GD, Gleason FH. 1973: Circular DNA from the water mold Saprolegnia. Arch. Mikrobiol 92:209–216.
   Google Scholar
• Dick MW. 2001. Straminipilous Fungi. Dordrecht, The Netherlands: Kluwer Academic Publishers.
   Google Scholar
• Forster H, Kinscherf TG, Leong SA, Maxwell DP. 1987. Molecular analysis of the mitochondrial genome of Phytophthora. Curr Genet 12:215–218.
   Google Scholar
• Gray MW, Lang BF, Cedergren R, Golding G, Lemieux C, Sankoff D, Turmel M, Brossard N, Delage E, Littlejohn TG, Plante I, Rioux P, Saint-Louis D, Zhu Y, Burger G. 1998. Genome structure and gene content in protist mitochondrial DNAs. Nucleic Acids Res 26: 865–878.
   Google Scholar
• Griffin DH, Timberlake WE, Cheney JC. 1974. Regulation of macromolecular synthesis, colony development, and specific growth rate of Achlya bisexualis during balanced growth. J Gen Microbiol 80:381–388.
   Google Scholar
• Hudspeth MES. 1992. The fungal mitochondrial genome—a broader perspective. In Arora DK, Elander RP, Mukerji KG, eds. Handbook of applied mycology. Fungal biotechnology. Vol. 4. New York: Marcel Dekker Inc. p 213–241.
   Google Scholar
• ———, Hudspeth DSS. 1996. Mitochondrial genomes of the zoosporic fungi. In Dayal R, ed. Advances in zoosporic fungi. New Delhi: MDPUBLICations Pvt Ltd. p 173–199.
   Google Scholar
• ———, Shumard DS, Bradford CJR, Grossman LI. 1983. Organization of Achlya mtDNA: a population with two orientations and a large inverted repeat containing the rRNA genes. Proc Natl Acad Sci USA 80:142–146.
   Google Scholar
• ———, ———, Tatti KM, Grossman LI. 1980. Rapid purification of yeast mitochondrial DNA in high yield. Biochim Biophys Acta 61:221–228.
   Google Scholar
• Klimczak J, Prell HH. 1984. Isolation and characterization of mitochondrial DNA of the oomycetous fungus Phytophthora infestans. Curr Genet 8:323–326.
   Google Scholar
• Lang BF, Burger G, O’Kelly CJ, Cedergren R, Golding GB, Lemieux C, Sankoff D, Turmel M, Gray MW. 1997. An ancestral mitochondrial DNA resembling a eubacterial genome in miniature. Nature 387:493–497.
   Google Scholar
• ———, Forget L. 1993. The mitochondrial genome of Phytophthora infestans. In O’Brien SJ, ed. Genetic Maps. Locus maps of complex genomes. Book 3 Lower Eukaryotes. 6th ed. Cold Spring Harbor, New York: Cold Spring Harbor Laboratory Press. p 3.133.
   Google Scholar
• ———, Gray MW, Burger G. 1999. Mitochondrial genome evolution and the origin of eukaryotes. Ann Rev Genet 33:351–397.
   Google Scholar
• Lowe TM, Eddy SR. 1997. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res 25:955–964.
   Google Scholar
• Maniatis T, Fritsch EF, Sambrook J. 1982. Molecular cloning: a laboratory manual. Cold Spring Harbor, New York: Cold Spring Harbor Laboratory.
   Google Scholar
• McNabb SA, Klassen GR. 1988. Uniformity of mitochondrial complexity in oomycetes and the evolution of the inverted repeat. Expt Mycol 12:233–242.
   Google Scholar
• Muramatsu T, Nishikawa K, Nemoto F, Kuchino Y, Nishimura S, Miyazawa T, Yokoyama S. 1988. Codon and amino-acid specificities of a transfer RNA are both converted by a single post-transcriptional modification. Nature 336:179–181.
   Google Scholar
• Patterson DJ. 1989. Stramenopiles: chromophytes from a protistan perspective. In Green JP, Leadbeater BSC, Diver WC, eds. The chromophyte algae: problems and perspectives. Oxford, UK: Clarendon Press. p 357–379.
   Google Scholar
• Oudot-LeSecq M-P, Fontaine JM, Rousvoal S, Kloareg B, Loiseaux-DeGoer S. 2001. The complete sequence of a brown algal mitochondrial genome, the ectocarpale Pylaiella littoralis (L.) Kjellm. J Mol Evol 53:80–88.
   Google Scholar
• ———, Kloareg B, Loiseaux-DeGoer S. 2002. The mitochondrial genome of the brown alga Laminaria digitata: a comparative analysis. Eur J Phycol 37:163–172.
   Google Scholar
• Paquin B, LaForest M-J, Forget L, Roewer I, Wang Z, Long-core J, Lang BF. 1997. The fungal mitochondrial genome project: evolution of fungal mitochondrial genomes and their gene expression. Curr Genet 31:380–395.
   Google Scholar
• Pfitzinger H, Weil JH, Pillay DTN, Guillemaut P. 1990. Codon recognition in plant chloroplasts. Plant Mol Biol 14:805–814.
   Google Scholar
• Shumard-Hudspeth DS, Hudspeth MES. 1990. Genic rearrangements in Phytophthora mitochondrial DNA. Curr Genet 17:413–417.
   Google Scholar
• Shumard DS, Grossman LI, Hudspeth MES. 1986. Achlya mitochondrial DNA: gene localization and analysis of inverted repeats. Mol Gen Genet 202:16–23.
   Google Scholar
• Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. 1997. The Clustal X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 24:4876–4882.
   Google Scholar
• Weiner JH, Bilous PT, Shaw GM, Lubitz SP, Frost L, Thomas GH, Cole JA, Turner RJ. 1998. A novel and ubiquitous system for membrane targeting and secretion of cofactor-containing proteins. Cell 93:93–101.
   Google Scholar