LITERATURE CITED
- Alfaro ME, Zoller S, Lutzoni F, 2003. Bayes or bootstrap? A simulation study comparing the performance of Bayesian Markov Chain Monte Carlo sampling and bootstrapping in assessing phylogenetic confidence. Mol Biol Evol 20:255–266.
- Avise JC, Ball RM. 1990. Principles of genealogical concordance in species concepts and biological taxonomy. Oxford Surveys Evol Biol 7:45–68.
- Barker FK, Lutzoni FM. 2002. The utility of the incongruence length difference test. Syst Biol 51:625–637.
- Baum DA, Donoghue MJ. 1995. Choosing among alternative “phylogenetic” species concepts. Syst Bot 20:560–573.
- Baum DA, Shaw KL. 1995. Genealogical perspectives on the species problem. In: Hoch PC, Stephenson AG, eds. Experimental and molecular approaches to plant bio-systematics. St Louis, Missouri: Botanical Garden. p 289–303.
- Breitenbach J, Kränzlin F. 1984. Fungi of Switzerland. Vol. 1. Ascomycetes. Lucerne, Switzerland: Verlag Mykologia. 310 p.
- Candoussau F, Fournier J, Magni J. 2001. New and rare species of Lasiosphaeria in southwestern France. Mycotaxon 80:201–240.
- Carroll G, Munk A. 1964. Studies on lignicolous Sordariaceae. Mycologia 56:77–98.
- Chaverri P, Castlebury LA, Samuels GJ, Geiser DM. 2003. Multilocus phylogenetic structure within the Trichoderma harzianum/Hypocrea lixii complex. Mol Phylo Evol 27:302–313.
- de Queiroz A. 1990. Phylogenetics systematics and species revisited. Cladistics 6:83–90.
- de Queiroz A. 1993. For consensus (sometimes). Syst Biol 42:368–372.
- Dennis RWG. 1977. British Ascomycetes. Vaduz, Germany: Strauss & Cramer. 585 p.
- Dettman JR, Harbinski FM, Taylor JW. 2001. Ascospore morphology is a poor predictor of the phylogenetic relationships of Neurospora and Gelasinospora. Fung Genet Biol 34:49–61.
- Ellis MB, Ellis JP. 1987. Microfungi on land plants: an identification handbook. New York: Macmillan. 818 p.
- Fairman CE. 1904. Some new fungi from western New York. J of Mycology 10:229–231.
- Fallah PM, Shearer CA. 2001. Freshwater ascomycetes: new or noteworthy species from north temperate lakes in Wisconsin. Mycologia 93:566–602.
- Felsenstein J. 1985. Confidence intervals on phylogenies: an approach using the bootstrap. Evolution 39:783–791.
- Gams W. 1973. Phialides with solitary conidia? Persoonia 7: 161–169.
- Gams W. 2000. Phialophora and some similar morphologically little-differentiated anamorphs of divergent ascomycetes. Stud Mycol 45:187–199.
- Gams W, Holubová-Jechová V. 1976. Chloridium and some other dematiaceous hyphomycetes growing on decaying wood. Stud Mycol 13:1–99.
- Geiser DM, Pitt JL, Taylor JW. 1998. Cryptic speciation and recombination in the aflotoxin producing fungus Aspergillus flavus. Proc Natl Acad Sci USA 95:388–393.
- Glass NL, Donaldson GC. 1995. Development of primer sets designed for use with the PCR to amplify conserved genes from filamentous ascomycetes. App Envir Microbio 61:1323–1330.
- Gnanananthan K. 1972. Revision of the genera Lasiosphaeria and Bombardia. [Doctoral Dissertation]. University of Toronto. 254 p.
- Harrington TC, Rizzo DM. 1999. Defining species in the fungi. In: Worrall JJ, ed. Structure and dynamics of fungal populations. Dordrecht: Kluwer Academic. p 43–70.
- Hilber O, Hilber R, Miller OK. 1987. Fungi of the Appalachian Mountains. Mycotaxon 30:269–288.
- Hilber R, Hilber O. 1979. Einige anmerkungen zu der gattung Cercophora Fuckel (Lasiosphaeriaceae). Z Mykol 45:209–233.
- Hilber R. 2002 The genus Lasiosphaeria and allied taxa. Kelheim, Germany: Publ. by the author. 9 p. 7 pl.
- Huelsenbeck JP, Ronquist FR. 2001. MrBayes: Bayesian inference of phylogenetic trees. Biometrics 17:754–755.
- Huhndorf SM. 1991. A method for sectioning ascomycete herbarium specimens for light microscopy. Mycologia 83:520–524.
- Huhndorf SM, Miller AN, Fernández FA. 2004. Molecular systematics of the Sordariales: the order and the family Lasiosphaeriaceae redefined. Mycologia 96(2):368–387.
- Kornerup, A, Wanscher JH. 1978. Methuen handbook of colour. 3rd ed. London: Eyre Methuen. 252 p.
- Koufopanou V, Burt A, Taylor JW. 1997. Concordance of gene genealogies reveals reproductive isolation in the pathogenic fungus Coccidioides immitis. Proc Natl Acad Sci USA 94:5478–5482.
- Liu YJ, Whelen S, Hall BD. 1999. Phylogenetic relationships among ascomycetes: evidence from an RNA Polymerase II Subunit. Mol Biol Evol 16:1799–1808.
- Lucklow M. 1995. Species concepts: assumptions, methods and applications. Syst Bot 20:589–605.
- Lundqvist N. 1972. Nordic Sordariaceae s. lat. Symbolae Botanicae Upsalienses 20:1–374.
- Lutzoni F, Wagner P, Reeb V, Zoller S. 2000. Integrating ambiguously aligned regions of DNA sequences in phylogenetic analyses without violating positional homology. Syst Biol 49:628–651.
- Mason-Gamer RJ, Kellogg EA. 1996. Testing for phylogenetic conflict among molecular datasets in the tribe Triticeae (Gramineae). Syst Biol 45:524–545.
- Miller AN, Huhndorf SM. 2001. Neotropical Ascomycetes 10. New and interesting Cercophora species. Sydowia 53: 211–226.
- Miller AN. 2004a. A natural classification of Lasiosphaeria based on nuclear LSU rDNA sequences. Mycol Res 108: 26–34.
- Miller AN. 2004b. Multi-gene phylogenies indicate ascomal wall morphology is a better predictor of phylogenetic relationships than ascospore morphology in the Sordariales. Mol Phylo Evol (In review).
- Miller AN, Læssøe T, Roberts P, Robinson K. 2003. Krieglsteinera lasiosphaeriae: a mycoparasite on Lasiosphaeria ovina new to Britain, Norway, Russia and the USA. Mycologist 17(1):12–13.
- Munk A. 1957. Danish pyrenomycetes. Dansk Bot Ark 17: 1–491.
- Nixon KC, Wheeler QD. 1990. An amplification of the phylogenetic species concept. Cladistics 6:211–223.
- O’Donnell K, Cigelnik E, Nirenberg H. 1998. Molecular systematics and phylogeography of the Gibberella fujikuroi species complex. Mycologia 90:465–493.
- Penzig O, Saccardo PA. 1897. Diagnoses fungorum novorum in insula Java collectorum. Malpighia 11:491–530.
- Posada D, Crandall KA. 1998. Modeltest: testing the model of DNA substitution. Bioinformatics 49:817–818.
- Réblová M, Barr ME, Samuels GJ. 1999. Chaetosphaeriaceae, a new family for Chaetosphaeria and its relatives. Sydowia 51:49–70.
- Seaver FJ. 1912. The genus Lasiosphaeria. Mycologia 4:115–124.
- Swofford DL. 2002. PAUP*. Phylogenetic analysis using parsimony (*and other methods). Version 4.0. Sunderland, Massachusetts: Sinauer Associates.
- Tamura K, Nei M. 1993. Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol Biol Evol 10:512–526.
- Taylor JW, Jacobson DJ, Kroken S, Kasuga T, Geiser DM, Hibbett DS, Fisher MC. 2000. Phylogenetic species recognition and species concepts in fungi. Fungal Genet Biol 31:21–32.
- Vasilyeva LN. 1998. Pyrenomycetidae et Loculoascomycetidae. Plantae non vasculares fungi et Bryopsidae, orientis estremi Rossica. Fungi. Vol. 4. Petropoli “Nauka” (MCMXCVIII).
- van Hooff H. 1993. Waarnemingen aan Lasiosphaeria ovina. Coolia 36:105–108.
- van Hooff H. 1994. Een mooie vondst te Geldrop. Collia 38:126–127.
- Wheeler QD, Nixon KC. 1990. Another way of looking at the species problem: a reply to de Queiroz and Donoghue. Cladistics 6:77–81.
- Yoder AD, Irwin JA, Payseur BA. 2001. Failure of the ILD to determine data combinability for slow loris phylogeny. Syst Biol 50:408–424.
- Zhang XM, Zhuang WY. 2003. Re-examinations of Bionectriaceae and Nectriaceae (Hypocreales) from temperate China on deposit in HMAS. Nova Hedwigia 76:191–200.