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Mycologia Volume 96, 2004 - Issue 1
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Original Articles

An ITS phylogeny of Leccinum and an analysis of the evolution of minisatellite-like sequences within ITS1

Henk C. den Bakker Nationaal Herbarium Nederland, Universiteit Leiden branch, Phanerogams and Cryptogams of the Netherlands and Europe section, P.O. Box 9514, 2300 RA Leiden, The Netherlands
,
Barbara Gravendeel Nationaal Herbarium Nederland, Universiteit Leiden branch, Molecular Systematics taskforce, P.O. Box 9514, 2300 RA Leiden, The Netherlands
&
Thomas W. Kuyper Wageningen Agricultural University, Department of Environmental Sciences, Subdepartment of Soil Quality, P.O. Box 8005, 6700 EC Wageningen, The Netherlands
Pages 102-118 | Accepted 24 Jun 2004, Published online: 30 Jan 2017

  • Aanen DK, Kuyper TW, Mes TH, Hoekstra RF., 2000 The evolution of reproductive isolation in the ectomycorrhizal Hebeloma crustuliniforme aggregate (Basidiomycetes) in northwestern Europe: a phylogenetic approach. Evolution 54:1192-1206
  • Andersen TH, Nilsson-Tillgren T., 1997 A fungal minisatellite. Nature 386:771.
  • Benson G., 1999 Tandem Repeats Finder: a program to analyze DNA sequences. Nucleic Acid Research 27:573-580
  • Binder M., 1999 Zur molekularen Systematik der Boletales: Boletineae und Sclerodermatineae subordo nov. [PhD Dissertation]. Regensburg, Germany: University of Regensburg. 148 p
  • ———, Besl H., 2000 28S rDNA sequence data and chemotaxonomical analyses on the generic conept of Leccinum (Boletales). In: Associazone Micologica Bresadola, ed. Micologia 2000. Brescia Italy: Grafica Sette. p 75–86
  • Bruns TD., 2001 ITS reality. Inoculum 52:2-3
  • Den Bakker HC., 2000 Hoe raak ik thuis in de Boleten. 3. Het geslacht Leccinum (Berken- of Ruigsteelboleten). Coolia 43:206-219
  • Dover GA, Ruiz Linares Bowen AT, Hancock JM., 1993 Detection and quantification of concerted evolution and molecular drive. In: Abelson JN ed. Methods in enzymology, New York: Academic Press. p 525–541
  • Engel H., 1978 Rauhstielröhrlinge—die Gattung Leccinum in Europa. Coburg, Germany: Hilmar Schneider. 76 p
  • Farris JS, Kallersjo M, Kluge AG, Bult C., 1995 Testing significance of incongruence. Cladistics 10:315-319
  • Gravendeel B, Chase MW, de Vogel EF, Roos MC, Mes THM, Bachmann K., 2001 Molecular phylogeny of Coelogyne (Epidendroideae; Orchidaceae) based on plastid RFLPs, matK, and nuclear ribosomal ITS sequences: evidence for polyphyly. Am J of Bot 88:1915-1927
  • Giraud T, Fortini D, Levis C, Brygoo Y., 1998 The minisatellite MSB1, in the fungus Botrytis cinerea, probably mutates by slippage. Molec Biol Evol 15:1524-1531
  • Graur D, Li W-H., 2000 Fundamentals of molecular evolution. Sunderland, Massachusetts: Sinauer. 443 p
  • Hamann A, Osiewacz HD., Genome analysis of filamentous fungi: identification and characterization of an unusual GT-rich minisatellite in the ascomycete Podospora anserine. Curr Genet 34:88-92
  • Harris DJ, Crandall KA., 2000 Intragenomic variation within ITS1 and ITS2 of freshwater crayfishes (Decapoda: Cambaridae): implications for phylogenetic and microsatellite studies. Molec Biol Evol 17:284-291
  • Huelsenbeck JP, Ronquist F., 2001 MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17:754-5
  • Hughes KW, McGhee LL, Methven AS, Johnson JE, Petersen RH., 1999 Patterns of geographic speciation in the genus Flammulina based on sequences of the ribosomal ITS1–5.8S-ITS2 area. Mycologia 91:978-986
  • Kasuga T, Mitchelson K., 1993 Determination of the DNA sequence of the 5.8S ribosomal gene of Heterobasidion annosum and Heterobasidion araucariae. Nucleic Acids Res 21:1320.
  • Kretzer A, Li Y, Szaro T, Bruns TD., 1996 Internal transcribed spacer sequences from 38 recognized species of Suillus sensu lato: phylogenetic and taxonomic implications. Mycologia 88:776-785
  • Ko KS, Jung HS., 2002 Three nonorthologues ITS1 types are present in a polypore fungus Trichaptum abietinum. Mol Phylogenet Evol 23:112-122
  • Korhonen M., 1995 New Boletoid fungi in the genus Leccinum from Fennoscandinavia. Karstenia 35:53-66
  • Lannoy G, Estades A., 1995 Monographie des Leccinum d'Europe. La Roche-sur-Foron, France: Fédéderation Mycologique Dauphiné-Savoie. 229 p
  • Lewin B., 2000 Genes VII. New York: Oxford University Press Inc. 990 p
  • Maddison WP, Maddison DR., 1992 MacClade version 3.04. Sunderland, Massachusetts: Sinauer
  • Mathews DH, Sabina J, Zuker M, Turner DH., 1999 Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure. J Mol Biol 288:911-940
  • Matzura O, Wennberg A., 1996 RNAdraw: an integrated program for RNA secondary structure calculation and analysis under 32-bit Microsoft Windows. CABIOS 12:247-249
  • McAllister BF, Werren JH., 1999 Evolution of tandemly repeated sequences: what happens at the end of an array?. J Mol Evol 48:469-481
  • Metzenberg AB, Wurzer G, Huisman THJ, Smithies O., 1991 Homology requirements for unequal crossing over in humans. Genetics 128:143-161
  • Meyer W, Mitchell TG., 1995 Polymerase chain reaction fingerprinting in fungi using single primers specific to minisatellites and simple repetitive DNA sequences: strain variation in Cryptococcus neoformans. Electrophoresis 16:1648-1656
  • Muir G, Fleming CC, Schlötterer C., 2001 Three divergent rDNA clusters predate species divergence in Quercus petraea (Matt.) Liebl. and Quercus robur L. Molec Biol Evol 18:112-119
  • Nakamura Y, Leppert M, O'Connell P, Wolff R, Holm T, Culver M, Martin C, Fujimoto E, Hoff M, Kumlin E, et al 1987 Variable number of tandem repeat (VNTR) markers for human gene mapping. Science 235:1616-1622
  • Peintner U, Bougher NL, Castellano MA, Moncalvo JM, Moser MM, Trappe JM, Vilgalys R., 2001 Multiple origins of sequestrate fungi related to Cortinarius (Cortinariaceae). Am Journ of Botany 88:2168-2179
  • Platas G, Acero J, Borkowski JA, Gonzalez V, Portal MA, Rubio V, Sanchez-Ballestros J, Salazar O, Pelaez F., 2001 Presence of a simple tandem repeat in the ITS1 region of the Xylariales. Curr Microbiology 43:43-50
  • Posada D, Crandall KA., 1998 MODELTEST: testing the model of DNA substitution. Bioinformatics 14:817-818
  • Singer R., 1986 The Agaricales in modern taxonomy. 4th ed. Koenigstein, Germany: Koeltz Scientific Books. 981 p
  • Smith AH, Thiers HD., 1971 The Boletes of Michigan. Ann Arbor, Michigan: The University of Michigan Press. 417 p
  • Swofford DL., 1999 PAUP*—Phylogenetic analysis using parsimony (* and other methods), version 4.0b10. Sunderland, Massachusetts: Sinauer
  • Van Herwerden L, Blair D, Agatsuma T., 1999 Intra-and interindividual variation in ITS1 of Paragonimus westermani (Trematoda: Digenea) and related species: implications for phylogenetic studies. Mol Phylogenet Evol 12:67-73
  • Van Nues RW, Rientjes JMJ, Van der Sande CAFM, Zerp SF, Sluiter C, Venema J, Planta RJ, Raué HA., 1994 Separate structural elements with internal transcribed spacer 1 of Saccharomyces cerevisiae precursor ribosomal RNA direct the formation of 17S and 26S rRNA. Nucl Acids Res 22:912-919
  • Von der Schulenburg JH, Hancock JM, Pagnamenta A, Sloggett JJ, Majerus MEN, Hurst GDD., 2001 Extreme length and length variation in the first ribosomal internal transcribed spacer of ladybird beetles (Coleoptera: Coccinellidae). Molec Biol Evol 18:648-660
  • Watling R., 1970 Boletaceae, Gomphidiaceae: Paxillaceae. In: Henderson DM, Orton PD, Watling R, eds. British Fungus Flora. Agarics and Boleti 1. Edinburgh, United Kingdom: Royal Botanical Gardens. p 45–57
  • White TJ, Bruns TD, Lee S, Taylor J., 1990 Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfland DH, Sninsky JJ, White TJ, eds. PCR protocols: a guide to methods and applications. San Diego: Acadamic Press. p 315–322
  • Wöstemeyer J, Kreibich A., 2002 Repetitive DNA elements in fungi (Mycota): impact on genomic architecture and evolution. Curr Genet 41:189-198
  • Zolan ME, Pukkila PJ., 1986 Inheritance of DNA methylation in Coprinus cinereus. Mol Cell Biol 6:195-200
  • Zuker M, Mathews DH, Turner DH., 1999 Algorithms and thermodynamics for RNA secondary structure prediction: a practical guide. In: Barciszewski J, Clark BFC, eds. RNA biochemistry and biotechnology. NATO ASI Series. Dordrecht: Kluwer Academic Publishers. p 11–43

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