107
Views
5
CrossRef citations to date
0
Altmetric
Original Articles

A microtiter plate procedure for evaluating fungal functional diversity on nitrogen substrates

&
Pages 353-363 | Accepted 20 Jan 2006, Published online: 23 Jan 2017

LITERATURE CITED

  • The Merck index: an encyclopedia of chemicals, drugs, and biologicals. 12th ed. 1996. New Jersey: Merck & Co. Inc.
  • Arnebrant K, Baath E, Soderstrom B. 1990. Changes in microfungal community structure after fertilization of Scots Pine forest soil with ammonium nitrate or urea. Soil Biol Biochem 22:309–312.
  • Baath E. 1988. A critical examination of the soil washing technique with special reference to the effect of the size of soil particles. Can J Bot 66:1566–1569.
  • Bardgett RD, Denton CS, Cook R. 1999. Below-ground herbivory promotes soil nutrient transfer and root growth in grassland. Ecol Letters 2:357–360.
  • ———, Hobbs PJ, Frostegard A. 1996. Changes in soil fungal: bacterial biomass ratios following reductions in the intensity of management of an upland grassland. Biol Fertil Soil 22:261–264.
  • ———, Leemans DK. 1995. The short-term effects of cessation of fertilizer applications, liming, and grazing on microbial biomass and activity and activity in a reseeded upland grassland soil. Biol Fertil Soil 19:148–154.
  • Bisset J, Widden P. 1972. An automatic, multichamber soil-washing apparatus for removing fungal spores from soil. Can J Microbiol 18:1399–1404.
  • Bock RD. 1975. Multivariate statistical methods in behavioral research. New York: McGraw-Hill.
  • Carreiro MM, Sinsabaugh RL, Repert DA, Parkhurst DF. 2000. Microbial enzyme shifts explain litter decay responses to simulated nitrogen deposition. Ecology 81:2359–2365.
  • Chapin FSI, Walker BH, Hobbs RJ, Hooper DU, Lawton JH, Sala OE, Tilman D. 1997. Biotic control over the functioning of ecosystems. Science 277:500–504.
  • Cook RC, Rayner ADM. 1984. Ecology of saprophytic fungi. London and New York: Longman.
  • Cromack JK, Caldwell BA. 1992. The role of fungi in litter decomposition and nutrient cycling. The fungal community. New York: Marcel Dekker Inc. p 653–668.
  • DeForest JL, Zak DR, Pregitzer KS, Burton AJ. 2004. Atmospheric nitrate deposition and the microbial degradation of cellobiose and vanillin in a northern hardwood forest. Soil Biol Biochem 36:965–971.
  • Dobranic JK, Zak J. 1999. A microtiter plate procedure for evaluating fungal functional diversity. Mycologia 91:756–765.
  • Donnison LM, Griffith GS, Bardgett RD. 2000. Determinants of fungal growth and activity in botanically diverse hay meadows: effects of litter type and fertilizer additions. Soil Biol Biochem 32:289–94.
  • Field A. 2000. Discovering statistics using SPSS for windows. London: SAGEPUBLICations. 496 p.
  • Garland JL, Mills AL. 1991. Classification and characterization of heterotrophic microbial communities on the basis of patterns of community-level sole-carbon-source utilization. Appl Environment Microbiol 57:2351–2359.
  • Griffin DH. 1994. Fungal physiology. New York: John Wiley & Sons Inc. 458 p.
  • Guckert JB, Carr GJ, Johnson TD, Hamm BG, Davidson DH, Kumagai Y. 1996. Community analysis by biolog: curve integration for statistical analysis of activated sludge microbial habitats. J Microb Meth 27:183–187.
  • Haack SK, Garchow H, Klug MJ. 1995. Analysis of factors affecting the accuracy, reproducibility, and interpretation of microbial community carbon source utilization patterns. Appl Environ Microbiol 61:1458–1468.
  • Harley JL, Waid JS. 1955. A method of studying mycelia on living roots and other surfaces in the soil. Trans Brit Mycol Soc 38:104–118.
  • Hawksworth DL, Colwell RR. 1992. The fungal dimension of biodiversity: magnitude, significance, and conservation. Biodivers Conserv 1:221–226.
  • Hermann R, Stottlemyer R, Zak JC, Edmonds RL, VanMiegroet H. 2000. Biogeochemical effects of global climate change on U.S. National Parks. J Am Water Resource Assoc 36:337–346.
  • Jenny H. 1980. The soil resource: origin and behavior. New York: Springer Verlag. 377 p.
  • Kandeler E, Kampichler C, Horack O. 1996. Biology of fertile soils. Biol Fertil Soil 23:299–306.
  • Kjoller A, Struwe S. 1992. Functional groups of microfungi in decomposition. In: Carroll GC, Wicklow DT, eds. The fungal community: its role and organization in the ecosystem 2. New York: Marcel Dekker. p 619–630.
  • Parkinson D, Coleman D. 1991. Microbial communities, activity and biomass. Ag, Ecosys Environ 34:3–33.
  • Pennanen T, Fritze H, Vanhala P, Kiikkila O, Neuvonen S, Baath E. 1998. Structure of a microbial community in soil after prolonged addition of low levels of simulated acid rain. Appl Environ Microbiol 64:2173–2180.
  • Perez-Amador M, Carbonell J. 1995. Arginine decarboxylase and putrescine oxidase in ovaries of Pisum sativum l. Changes during ovary senescence and early stages of fruit development. Plant Physiol 107:865–872.
  • Perry ADM, Amaranthus MP, Borchers JG, Borchero SL, Brainerd RE. 1989. Bootstrapping in ecosystems. Bioscience 39:230–237.
  • Preston-Mafham J, Boddy L, Randerson PF. 2002. Analysis of microbial community functional diversity using sole-carbon-source utilization profiles—a critique. Microb Ecol 42:1–14.
  • Rastogi R, Dulson J, Rothstein S. 1993. Cloning of tomato (Lycospersicon esculentum mill.) arginine decarboxylase gene and its expression during fruit ripening. Plant Physiol 103:829–834.
  • Smalla K, Wachtendorf U, Heuer H, Liu W-T, Forney L. 1998. Analysis of Biolog GN substrate utilization patterns by microbial communities. Appl Environ Microbiol 64:1220–1225.
  • Sobek E, Zak J. 2003. A microtiter plate method for evaluating soil fungal functional diversity. Mycologia 95:590–602.
  • Sokal RR, Rohlf FJ. 1995. Biometry. New York: W.H. Freeman & Co. 887 p.
  • Staff SS. 1985. Soil survey of Big Bend National Park. Part of Brewster County: USDA, Soil Conservation Service.
  • Tabachnick BG, Fidell LS. 1996. Using multivariate statistics. New York: HarperCollins. 880 p.
  • Vitousek PM, Aber JD, Howarth R, Likens GE, Matson PA, Schindler D, Schlesinger WH, Tilman GD. 1997. Human alteration of the global nitrogen cycle: causes and consequences. Issues in Ecology.
  • Vogt KA, Bloomfield J, Ammirati J, Ammirati S. 1992. Sporocarp production by basidiomycetes, with emphasis on forest ecosystems. In: Carroll GC, Wicklow DT, eds. The fungal community: its role and organization in the ecosystem 2. New York: Marcel Dekker. p 518–563.
  • Willig MR, Moorhead DL, Cox SB, Zak J. 1996. Functional diversity of soil bacterial communities in the Tabonuco forest: interaction of anthropogenic and natural disturbance. Biotropica 28:471–483.
  • Wolters V, Silver WL, Bignell DE, Coleman DC, Lavelle P, Putten WH, Ruiter PD, Rusek J, Wall DH, Wardle DA, Brussaard L, Dangerfield JM, Brown VK, Giller K, Hooper DU, Sala O, Tiedje J, Veen JA. 2000. Effects of global changes on above- and belowground biodiversity in terrestrial ecosystems: implications for ecosystem functioning. Bioscience 50:1089–1098.
  • Zak J, Willig MR, Moorhead DL, Wildman HG. 1994. Functional diversity of microbial communities: a quantitative approach. Soil Biol Biochem 26:1101–1108.
  • Zar JH. 1999. Biostatistical analysis. New Jersey: Prentice Hall. 663 p.
  • Zhang Q, Zak J. 1995. Effects of gapsize on litter decomposition and microbial activity in a subtropical forest. Ecology 76:2196–2204.

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.