Molecular systematics of Helicoma, Helicomyces and Helicosporium and their teleomorphs inferred from rDNA sequences

LITERATURE CITED

• Barr ME. 1979. A classification of loculoascomycetes. Mycologia 71:935–957.
   Google Scholar
• ———. 1980. On the family Tubeufiaceae. Mycotaxon 12:137–167.
   Google Scholar
• Bucher VVC, Pointing SB, Hyde KD, Reddy CA. 2004. Production of wood decay enzymes, loss of mass, and lignin solubilization in woody, diverse tropical freshwater fungi. Microb Ecol 48:331–337.
   Google Scholar
• Carris LM. 1989. Vaccinium fungi: Helicoma vaccinii sp. nov. Mycotaxon 36:29–34.
   Google Scholar
• Casteñeda Ruíz RF, Kendrick B, Guarro J, Mayayo E. 1998. New species of Dictyochaeta and Helicoma from rain-forests in Cuba. Mycol Res 102:58–62.
   Google Scholar
• Crane JL, Shearer CA, Barr ME. 1998. A revision of Boerlagiomyces with notes and a key to the saprobic genera of Tubeufiaceae. Can J Bot 76:602–612.
   Google Scholar
• Crous PW, Aptroot A, Kang J-C, Braun U, Wingfield MJ. 2000. The genus Mycosphaerella and its anamorph. Stud Mycol 45:107–121.
   Google Scholar
• ———, Kang J-C, Braun U. 2001. A phylogenetic redefinition of anamorph genera in Mycosphaerella based on ITS rDNA sequence and morphology. Mycologia 93:1081–1101.
   Google Scholar
• Goh TK, Hyde KD. 1996. Helicoon gigantisporum sp. nov., and an amended key to the genus. Mycol Res 100: 1485–1488.
   Google Scholar
• Goos RD. 1985. A review of the anamorph genus Helicomyces. Mycologia 77:606–618.
   Google Scholar
• ———. 1986. A review of the anamorph genus Helicoma. Mycologia 78:744–761.
   Google Scholar
• ———. 1987. Fungi with a twist: the helicosporous hyphomycetes. Mycologia 79:1–22.
   Google Scholar
• ———. 1989. On the anamorph genera Helicosporium and Drepanospora. Mycologia 81:356–374.
   Google Scholar
• Hanada T, Sato T, Arioka M, Uramoto M, Yamasaki M. 1996. Purification and characterization of a 15 kDa protein (p15) produced by Helicosporium that exhibits distinct effects on neurite outgrowth from cortical neurons and pc12 cells. Biochem Biophys Res Commun 228:209–215.
   Google Scholar
• Hausner G, Reid J, Klassen GR. 2000. On the phylogeny of members of Ceratocystis s.s. and Ophiostoma that possess different anamorphic states, with emphasis on the anamorph genus Leptographium, based on partial ribosomal DNA sequences. Can J Bot 78:903–916.
   Google Scholar
• Huelsenbeck JP, Ronquist F. 2001. MrBayes: Bayesian inference of phylogenetic trees. Bioinformatics 17: 754–755.
   Google Scholar
• Kendrick B. 2003. Analysis of morphogenesis in hyphomycetes: new characters derived from considering some conidiophores and conidia as condensed hyphal systems. Can J Bot 81:75–100.
   Google Scholar
• Kirk PM, Cannon PF, David JC, Stalpers JA. 2001. Ainsworth and Bisby’s Dictionary of the Fungi. Oxon, UK: CABI Publishing.
   Google Scholar
• Kodsueb R, Lumyong S, Lumyong P, McKenzie EHC, Ho WH, Hyde KD. 2004. Acanthostigma and Tubeufia species, including T. claspisphaeria sp. nov., from submerged wood in. Mycologia, 96:667–674.
   Google Scholar
• Lane LC, Shearer CA. 1984. Helicomyces torquatus, new species, a new hyphomycete from Panama. Mycotaxon 19:291–298.
   Google Scholar
• Linder DH. 1929. A monograph of the helicosporous fungi. Ann Mo Bot Gard 16:227–338.
   Google Scholar
• Moore RT. 1954. Three new species of helicosporae. Mycologia 46:89–92.
   Google Scholar
• Nakagiri A, Ito T. 1995. Some dematiaceous hyphomycetes on decomposing leaves of Satakentia liukiuensis from Ishigaki Island, Japan. Institute for Fermentation Research Communications 17:75–98.
   Google Scholar
• Ohtsu Y, Sasamura H, Tsurumi Y, Yoshimura S, Takase S, Hashimoto M, Shibata T, Hino M, Fujii T. 2003. The novel gluconeogenesis inhibitors FR225659 and related compounds that originate from Helicomyces sp. no. 19353. J Antibiot 56:682–688.
   Google Scholar
• Pirozynski KA. 1972. Micro Fungi of Tanzania Part 1: miscellaneous fungi on oil palm. Commonwealth Mycological Institute Mycol Pap 129:1–39.
   Google Scholar
• Rambaut A. 1999. Se-Al: Sequence Alignment Editor. Available at <http://evolve.zoo.ox.ac.uk/>. Oxford, U.K: Department of Zoology, University of Oxford.
   Google Scholar
• Réblová M, Barr ME. 2000. The genus Acanthostigma (Tubeufiaceae, Pleosporales). Sydowia 52:258–285.
   Google Scholar
• Rossman AY. 1987. The Tubeufiaceae and similar loculoas-comycetes. Mycol Pap 157:1–71.
   Google Scholar
• ———. 2000. Towards monophyletic genera in the holomorphic Hypocreales. Stud Mycol 45:27–34.
   Google Scholar
• ———, Samuels GJ, Rogerson CT, Lowen R. 1999. Genera of Bionectriaceae, Hypocreaceae and Nectriaceae (Hypocreales, Ascomycetes). Stud Mycol 42:1–248.
   Google Scholar
• Samuels GJ, Rossman AY, Müller E. 1979. Life history of Brazilian ascomycetes 6. Sydowia 31:180–193.
   Google Scholar
• Schoch CL, Crous PW, Wingfield MJ, Wingfield BD. 2000. Phylogeny of Calonectria and selected hypocrealean genera with cylindrical macroconidia. Stud Mycol 45:45–62.
   Google Scholar
• Schroers H-J. 2000. Generic delimitation of Bionectria (Bionectriaceae, Hypocreales) based on holomorph characters and rDNA sequences. Stud Mycol 45:63–82.
   Google Scholar
• Seifert KA. 1993. Integrating anamorphic fungi into the fungal system. In: Reynolds DR, Taylor JW, eds. The fungal holomorph: mitotic, meiotic and pleomorphic speciation in fungal systematics. Newport, Oregon: CABI. p 79–86.
   Google Scholar
• ———, Samuels GJ. 2000. How should we look at anamorphs? Stud Mycol 45:5–18.
   Google Scholar
• Shearer CA. 1987. Helicoma chlamydosporum, a new hyphomycetes from submerged wood in Panama. Mycologia 79:468–472.
   Google Scholar
• Sivichai S, Jones EBG, Hywel-Jones N. 2002. Fungal colonisation of wood in a freshwater stream at Tad Ta Phu, Khao Yai National Park, Thailand. Fungal Diversity June 10:113–129.
   Google Scholar
• Swofford DL. 2003. PAUP*: phylogenetic analysis using parsimony (*and other methods). Sunderland, Massachusetts: Sinauer Associates.
   Google Scholar
• Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. 1997. The Clustal X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876–4882.
   Google Scholar
• Tsui CKM, Berbee ML. 2006. Phylogenetic relationships and convergence of helicosporous fungi inferred from ribosomal DNA sequences. Mol Phyl Evol (In press).
   Google Scholar
• ———, Goh TK, Hyde KD, Hodgkiss IJ. 2001a. New species or records of Cacumisporium, Helicosporium, Monotosporella and Bahusutrabeeja (Hyphomycetes) on submerged wood in Hong Kong streams. Mycologia 93:389–397.
   Google Scholar
• ———, Hyde KD, Hodgkiss IJ. 2001b. Longitudinal and temporal distribution of freshwater ascomycetes and dematiaceous hyphomycetes on submerged wood in the Lam Tsuen River, Hong Kong. J N Am Benthol Soc 20:533–549.
   Google Scholar
• Yuen TK, Hyde KD, Hodgkiss IJ. 1998. Physiological growth parameters and enzyme production in tropical freshwater fungi. Material und Organismen (Berlin) 32:1–16.
   Google Scholar