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Original Articles

Identification and detection of Macrophomina phaseolina by using species-specific oligonucleotide primers and probe

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Pages 797-803 | Accepted 28 Aug 2007, Published online: 23 Jan 2017

LITERATURE CITED

  • Arora DK, Hirsch PR, Kerry BR. 1996. PCR-based molecular discrimination of Verticillium chlamydosporium isolates. Mycol Res 100:801–809.
  • Bruns TD, White TJ, Taylor JW. 1991. Fungal molecular systematicis. Ann Rev Ecol Syst 22:525–564.
  • Byadgi AS, Hegde RK. 1985. Variations among the isolates of Rhizoctonia bataticola from different host plants. Indian Phytopathology 38:297–301.
  • Cloud GL, Rupe JC. 1991. Comparison of three media for enumeration of sclerotia of Macrophomina phaseolina. Plant Disease 75:771–772.
  • Das IK, Fakrudin B, Arora DK. 2006. RAPD cluster analysis and chlorate sensitivity of some Indian isolates Macrophomina phaseolina from sorghum and their relationships with pathogenicity. Microbiol Res. Jun 27.
  • Edel V, Steinberg C, Gautheron N, Alabouvette C. 2000. Ribosomal DNA-targeted oligonucleotide probe and PCR assay specific for Fusarium oxysporum. Mycol Res 104:518–526.
  • Gardes M, Bruns TD. 1993. ITS primers with enhanced specificity for basidiomycetes application to the identification of Mycorrhizae and rusts. Molecular Ecology 2: 113–118.
  • Irina S Druzhinina, Alexei G Kopchinskiy, Monika Komon, John Bissett, George Szakacs, Christian P Kubicek. 2005. An oligonucleotide barcode for species identification in Trichoderma and Hypocrea. Fungal Genetics and Biology 42:813–828.
  • Jana TK, Singh NK, Koundal KR, Sharma TR. 2005a. Genetic differentiation of charcoal rot pathogen, Macrophomina phaseolina, in to specific groups using URP-PCR. Can J Microbiol 51:159–164.
  • ———, Sharma TR, Singh NK. 2005b. SSR based detection of genetic variability in the charcoal root rot pathogen Macrophominba phaseolina. Mycol Res 109:81–86.
  • Khan AL, Fakir GA, Thirumalchar MJ. 1976. Comparative pathogenicity of two strains of Macrophomina phaseolina from sesame. Bangaladesh Journal of Botany 5:77–81.
  • Kunwar IK, Singh T, Machado CC, Sinclair JB. 1986. Histopathology of soybean seed and seedling infection by Macrophomina phaseolina. Phytopathology 76:532–535.
  • Lee SB, White TJ, Taylor JW. 1993. Detection of Phytophthora species of oligonucleotide hybridization to amplified ribosomal DNA spacers. Phytopathology 83:177–181.
  • Lee SW, Taylor JW. 1992. Isolation of DNA from fungal mycelia and single spores. In: Innis MA, Gelland DH, Sninsky JJ, White TJ, eds. PCR protocols: A guide to Methods and Applications. San Diego: Academic Press. p 282–287.
  • Lovic BR, Martyn RD, Miller ME. 1995. Sequence analysis of the ITS regions of rDNA in Monosporascus spp. reveals its potential for PCR-mediated detection. Phytopathology 85:655–661.
  • Mihail JD, Taylor SJ. 1995. Interpreting variability among isolates for Macrophomina phaseolina in pathogenicity, pycnidium production and chlorate utilization. Canadian Journal of Botany 10:1596–1603.
  • Nazar RN, Hu X, Schmidt J, Culham D, Robb J. 1991. Potential use of PCR-amplified ribosomal intergenic sequences in the detection and differentiation of Verticillium wilt pathogens. Physiological and Molecular Plant Pathology 39:1–11.
  • Pearson CAS, Leslie JE, Schweak EW. 1987a. Host preference co-related with chlorate resistance in Macrophomina phaseolina. Plant Disease 71:828–831.
  • Purkayastha S, Kaur B, Dilbaghi N, Chaudhary A. 2006. Characterization of Macrophomina phaseolina, the charcoal rot pathogen of cluster bean, using conventional techniques and PCR-based molecular markers. Plant Pathology 55:106–116.
  • Schmidt O, Moreth U. 1999. Identification of dry rot fungus, Serpula lacrymans and the wild Merulius, S. himantiodes, by amplified ribosomal restriction analysis (ARDRA). Holzforchung 53:123–128.
  • Sookyung Oh, Pascal Kamdem D, Daniel E Keathley, Kyung-Hwan Han. 2003. Detection and species identification of wood–decaying fungi by hybridization of immobilized sequence-specific oligonucleotide probes with PCR-amplified fungal ribosomal DNA internal transcribed spacers. Holzforschung 45:346–356.
  • Srivastava AK, Singh RB. 1990. Effect of organic amendment on interaction of Macrophomina phaseolina and Melpidogyne incognita on fresh bean (Phaseolus vulgaris). New Agriculturist 1:99–100.
  • Su G, Suh S O, Schneider RW, Rusin JS. 2001. Host specialization in the charcoal rot fungus, Macrophomina phaseolina. Phytopathology 92:120–126.
  • Thompson JD, Higgins DG, Gibson TJ. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Research 22:4673–4680.
  • White TM, Bruns T, Lee S, Taylor J. 1990. Amplification and direct sequencing of fungal ribosomal DNA for phylogenetics. In: Inns MA, Gelfand DH, Sninsky JJ, White TJ, eds. PCR protocols: A guide to methods and applications. San Diego, California: Academic press. p 315–321.

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