Superovulation alters global DNA methylation in early mouse embryo development

References

• Smallwood SA, Kelsey G. De novo DNA methylation: a germ cell perspective. Trends Genet. 2012;28:33–42.
   PubMed Web of Science ®Google Scholar
• von Meyenn F, Reik W. Forget the parents: epigenetic reprogramming in human germ cells. Cell. 2015;161:1248–1251.
   PubMed Web of Science ®Google Scholar
• Hargan-Calvopina J, Taylor S, Cook H, et al. Stage-specific demethylation in primordial germ cells safeguards against precocious differentiation. Dev Cell. 2016;39:75–86.
   PubMed Web of Science ®Google Scholar
• Bogdanovic O, Smits AH, de la Calle Mustienes E, et al. Active DNA demethylation at enhancers during the vertebrate phylotypic period. Nat Genet. 2016;48:417–426.
   PubMed Web of Science ®Google Scholar
• Hon GC, Rajagopal N, Shen Y, et al. Epigenetic memory at embryonic enhancers identified in DNA methylation maps from adult mouse tissues. Nat Genet. 2013;45:1198–1206.
   PubMed Web of Science ®Google Scholar
• Gkountela S, Zhang KX, Shafiq TA, et al. DNA demethylation dynamics in the human prenatal germline. Cell. 2015;161:1425–1436.
   PubMed Web of Science ®Google Scholar
• Guo F, Yan L, Guo H, et al. The transcriptome and DNA methylome landscapes of human primordial germ cells. Cell. 2015;161:1437–1452.
   PubMed Web of Science ®Google Scholar
• Tang WW, Dietmann S, Irie N, et al. A unique gene regulatory network resets the human germline epigenome for development. Cell. 2015;161:1453–1467.
   PubMed Web of Science ®Google Scholar
• Guo JU, Su Y, Shin JH, et al. Distribution, recognition and regulation of non-CpG methylation in the adult mammalian brain. Nat Neurosci. 2014;17:215–222.
   PubMed Web of Science ®Google Scholar
• Smith ZD, Chan MM, Humm KC, et al. DNA methylation dynamics of the human preimplantation embryo. Nature. 2014;511:611–615.
   PubMed Web of Science ®Google Scholar
• Guo H, Zhu P, Yan L, et al. The DNA methylation landscape of human early embryos. Nature. 2014;511:606–610.
   PubMed Web of Science ®Google Scholar
• Gosden R, Trasler J, Lucifero D, et al. Rare congenital disorders, imprinted genes, and assisted reproductive technology. Lancet. 2003;361:1975–1977.
   PubMed Web of Science ®Google Scholar
• Maher ER. Imprinting and assisted reproductive technology. Hum Mol Genet. 2005;14 Spec No 1:R133–R138.
   PubMed Web of Science ®Google Scholar
• Sutcliffe AG, Peters CJ, Bowdin S, et al. Assisted reproductive therapies and imprinting disorders – a preliminary British survey. Hum Reprod. 2006;21:1009–1011.
   PubMed Web of Science ®Google Scholar
• DeBaun MR, Niemitz EL, Feinberg AP. Association of in vitro fertilization with Beckwith-Wiedemann syndrome and epigenetic alterations of LIT1 and H19. Am J Hum Genet. 2003;72:156–160.
   PubMed Web of Science ®Google Scholar
• Gicquel C, Gaston V, Mandelbaum J, et al. In vitro fertilization may increase the risk of Beckwith-Wiedemann syndrome related to the abnormal imprinting of the KCN1OT gene. Am J Hum Genet. 2003;72:1338–1341.
   PubMed Web of Science ®Google Scholar
• Sato A, Otsu E, Negishi H, et al. Aberrant DNA methylation of imprinted loci in superovulated oocytes. Hum Reprod. 2007;22:26–35.
   PubMed Web of Science ®Google Scholar
• Khosla S, Dean W, Brown D, et al. Culture of preimplantation mouse embryos affects fetal development and the expression of imprinted genes. Biol Reprod. 2001;64:918–926.
   PubMed Web of Science ®Google Scholar
• Rivera RM, Stein P, Weaver JR, et al. Manipulations of mouse embryos prior to implantation result in aberrant expression of imprinted genes on day 9.5 of development. Hum Mol Genet. 2008;17:1–14.
   PubMed Web of Science ®Google Scholar
• Mann MR, Lee SS, Doherty AS, et al. Selective loss of imprinting in the placenta following preimplantation development in culture. Development. 2004;131:3727–3735.
   PubMed Web of Science ®Google Scholar
• Doherty AS, Mann MR, Tremblay KD, et al. Differential effects of culture on imprinted H19 expression in the preimplantation mouse embryo. Biol Reprod. 2000;62:1526–1535.
   PubMed Web of Science ®Google Scholar
• Young LE, Fernandes K, McEvoy TG, et al. Epigenetic change in IGF2R is associated with fetal overgrowth after sheep embryo culture. Nat Genet. 2001;27:153–154.
   PubMed Web of Science ®Google Scholar
• Rexhaj E, Paoloni-Giacobino A, Rimoldi SF, et al. Mice generated by in vitro fertilization exhibit vascular dysfunction and shortened life span. J Clin Invest. 2013;123:5052–5060.
   PubMed Web of Science ®Google Scholar
• Gravina S, Dong X, Yu B, et al. Single-cell genome-wide bisulfite sequencing uncovers extensive heterogeneity in the mouse liver methylome. Genome Biol. 2016;17:150.
   PubMed Web of Science ®Google Scholar
• Yu B, Dong X, Gravina S, et al. Genome-wide, single-cell DNA methylomics reveals increased non-CpG methylation during human oocyte maturation. Stem Cell Reports. 2017;9:397–407.
   PubMed Web of Science ®Google Scholar
• Smallwood SA, Lee HJ, Angermueller C, et al. Single-cell genome-wide bisulfite sequencing for assessing epigenetic heterogeneity. Nat Methods. 2014;11:817–820.
   PubMed Web of Science ®Google Scholar
• Chang AS, Moley KH, Wangler M, et al. Association between Beckwith-Wiedemann syndrome and assisted reproductive technology: a case series of 19 patients. Fertil Steril. 2005;83:349–354.
   PubMed Web of Science ®Google Scholar
• Ludwig M, Katalinic A, Gross S, et al. Increased prevalence of imprinting defects in patients with Angelman syndrome born to subfertile couples. J Med Genet. 2005;42:289–291.
   PubMed Web of Science ®Google Scholar
• Market-Velker BA, Zhang L, Magri LS, et al. Dual effects of superovulation: loss of maternal and paternal imprinted methylation in a dose-dependent manner. Hum Mol Genet. 2010;19:36–51.
   PubMed Web of Science ®Google Scholar
• Wu J, Huang B, Chen H, et al. The landscape of accessible chromatin in mammalian preimplantation embryos. Nature. 2016;534:652–657.
   PubMed Web of Science ®Google Scholar
• Katari S, Turan N, Bibikova M, et al. DNA methylation and gene expression differences in children conceived in vitro or in vivo. Hum Mol Genet. 2009;18:3769–3778.
   PubMed Web of Science ®Google Scholar
• Mahaira LG, Katsara O, Pappou E, et al. IGF2BP1 expression in human mesenchymal stem cells significantly affects their proliferation and is under the epigenetic control of TET1/2 demethylases. Stem Cells Dev. 2014;23:2501–2512.
   PubMed Web of Science ®Google Scholar
• Davudian S, Mansoori B, Shajari N, et al. BACH1, the master regulator gene: a novel candidate target for cancer therapy. Gene. 2016;588:30–37.
   PubMed Web of Science ®Google Scholar
• Rinaudo PF, Giritharan G, Talbi S, et al. Effects of oxygen tension on gene expression in preimplantation mouse embryos. Fertil Steril. 2006;86:1252–1265, 1265 e1251–e1236.
   PubMed Web of Science ®Google Scholar
• Sullivan GM, Feinn R. Using effect size – or why the P value is not enough. J Grad Med Educ. 2012;4:279–282.
   PubMedGoogle Scholar