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Research Paper

DEMETER plays a role in DNA demethylation and disease response in somatic tissues of Arabidopsis

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Pages 1074-1087 | Received 04 Mar 2019, Accepted 05 Jun 2019, Published online: 19 Jun 2019

References

  • Zhu JK. Active DNA demethylation mediated by DNA glycosylases. Annu Rev Genet. 2009;43:143–166. PubMed PMID: 19659441; PubMed Central PMCID: PMC3137514.
  • Bauer MJ, Fischer RL. Genome demethylation and imprinting in the endosperm. Curr Opin Plant Biol. 2011 Apr;14(2):162–167. . PubMed PMID: 21435940; PubMed Central PMCID: PMC3082360.
  • Choi Y, Gehring M, Johnson L, et al. DEMETER, a DNA glycosylase domain protein, is required for endosperm gene imprinting and seed viability in arabidopsis. Cell. 2002 Jul 12;110(1):33–42. PubMed PMID: 12150995.
  • Penterman J, Zilberman D, Huh JH, et al. DNA demethylation in the Arabidopsis genome. Proc Natl Acad Sci U S A. 2007 Apr 17;104(16):6752–6757. PubMed PMID: 17409185; PubMed Central PMCID: PMC1847597.
  • Schumann U, Lee J, Kazan K, et al. DNA-demethylase regulated genes show methylation-independent spatiotemporal expression patterns. Front Plant Sci. 2017;8:1449. PubMed PMID: 28894455; PubMed Central PMCID: PMCPMC5581395.
  • Ortega-Galisteo AP, Morales-Ruiz T, Ariza RR, et al. Arabidopsis DEMETER-LIKE proteins DML2 and DML3 are required for appropriate distribution of DNA methylation marks. Plant Mol Biol. 2008 Aug;67(6):671–681. PubMed PMID: 18493721.
  • Yu A, Lepere G, Jay F, et al. Dynamics and biological relevance of DNA demethylation in Arabidopsis antibacterial defense. Proc Natl Acad Sci U S A. 2013 Feb 5;110(6):2389–2394. PubMed PMID: 23335630; PubMed Central PMCID: PMC3568381.
  • Le TN, Schumann U, Smith NA, et al. DNA demethylases target promoter transposable elements to positively regulate stress responsive genes in Arabidopsis. Genome Biol. 2014;15(9):458. PubMed PMID: 25228471; PubMed Central PMCID: PMC4189188.
  • Gong Z, Morales-Ruiz T, Ariza RR, et al. ROS1, a repressor of transcriptional gene silencing in Arabidopsis, encodes a DNA glycosylase/lyase. Cell. 2002 Dec 13;111(6):803–814. PubMed PMID: 12526807.
  • Schmid M, Davison TS, Henz SR, et al. A gene expression map of Arabidopsis thaliana development. Nat Genet. 2005 May;37(5):501–506. PubMed PMID: 15806101.
  • Klepikova AV, Kasianov AS, Gerasimov ES, et al. A high resolution map of the Arabidopsis thaliana developmental transcriptome based on RNA-seq profiling. Plant J. 2016 Dec;88(6):1058–1070. PubMed PMID: 27549386.
  • Lister R, O’Malley RC, Tonti-Filippini J, et al. Highly integrated single-base resolution maps of the epigenome in Arabidopsis. Cell. 2008 May 2;133(3):523–536. PubMed PMID: 18423832; PubMed Central PMCID: PMC2723732.
  • Stroud H, Greenberg MV, Feng S, et al. Comprehensive analysis of silencing mutants reveals complex regulation of the Arabidopsis methylome. Cell. 2013 Jan 17;152(1–2):352–364. PubMed PMID: 23313553; PubMed Central PMCID: PMC3597350.
  • Zheng X, Deng W, Luo K, et al. The cauliflower mosaic virus (CaMV) 35S promoter sequence alters the level and patterns of activity of adjacent tissue- and organ-specific gene promoters. Plant Cell Rep. 2007 Aug;26(8):1195–1203. PubMed PMID: 17340093.
  • Lei M, Zhang H, Julian R, et al. Regulatory link between DNA methylation and active demethylation in Arabidopsis. Proc Natl Acad Sci U S A. 2015 Mar 17;112(11):3553–3557. PubMed PMID: 25733903; PubMed Central PMCID: PMCPMC4371987.
  • Gent JI, Ellis NA, Guo L, et al. CHH islands: de novo DNA methylation in near-gene chromatin regulation in maize. Genome Res. 2013 Apr;23(4):628–637. PubMed PMID: 23269663; PubMed Central PMCID: PMCPMC3613580.
  • Barkan A, Martienssen RA. Inactivation of maize transposon Mu suppresses a mutant phenotype by activating an outward-reading promoter near the end of Mu1. Proc Natl Acad Sci U S A. 1991 Apr 15;88(8):3502–3506. . PubMed PMID: 1849660; PubMed Central PMCID: PMCPMC51476.
  • Wesley SV, Helliwell CA, Smith NA, et al. Construct design for efficient, effective and high-throughput gene silencing in plants. Plant J. 2001 Sep;27(6):581–590. PubMed PMID: 11576441.
  • Ditta G, Stanfield S, Corbin D, et al. Broad host range DNA cloning system for gram-negative bacteria: construction of a gene bank of rhizobium meliloti. Proc Natl Acad Sci U S A. 1980 Dec;77(12):7347–7351. PubMed PMID: 7012838; PubMed Central PMCID: PMCPMC350500.
  • Clough SJ, Bent AF. Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J. 1998 Dec;16(6):735–743. PubMed PMID: 10069079.
  • Wu Q, Smith NA, Zhang D, et al. Root-specific expression of a Jacalin Lectin family protein gene requires a transposable element sequence in the promoter. Genes (Basel) (Basel). 2018 Nov 13;9(11). DOI:10.3390/genes9110550. PubMed PMID: 30428604; PubMed Central PMCID: PMCPMC6266147.
  • Jefferson RA, Kavanagh TA, Bevan MW. GUS fusions: beta-glucuronidase as a sensitive and versatile gene fusion marker in higher plants. Embo J. 1987 Dec 20;6(13):3901–3907. PubMed PMID: 3327686; PubMed Central PMCID: PMCPMC553867.
  • Chen S, Helliwell CA, Wu LM, et al. A novel T-DNA vector design for selection of transgenic lines with simple transgene integration and stable transgene expression. Funct Plant Biol. 2005;32(8):671–681. PubMed PMID: WOS:000230931100001; English.
  • Wang MB, Wesley SV, Finnegan EJ, et al. Replicating satellite RNA induces sequence-specific DNA methylation and truncated transcripts in plants. RNA. 2001 Jan;7(1):16–28. PubMed PMID: 11214177; PubMed Central PMCID: PMCPMC1370065.
  • Schmittgen TD, Livak KJ. Analyzing real-time PCR data by the comparative C(T) method. Nat Protoc. 2008;3(6): 1101–1108. PubMed PMID: 18546601.
  • Finn TE, Wang L, Smolilo D, et al. Transgene expression and transgene-induced silencing in diploid and autotetraploid Arabidopsis. Genetics. 2011 Feb;187(2):409–423. PubMed PMID: 21078688; PubMed Central PMCID: PMC3030486.
  • Murashige T, Skoog F. A revised medium for rapid growth and bio assays with tobacco tissue cultures. Physiol Plantarum. 1962;15(3):473–497. PubMed PMID: WOS:A19621781C00014; English.

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