References
- Burton GJ, Jauniaux E. What is the placenta?. Am J Obstet Gynecol. 2015;213(4 Suppl):S6.e1-S6.e4.
- Sadovsky Y, Clifton VL, Burton GJ. Invigorating placental research through the “Human Placenta Project. Placenta. [ Internet]. 2014 cited 2018 May 15;35:527. Available from: https://www.sciencedirect.com/science/article/pii/S0143400414005931?via%3Dihub.
- Bartolomei MS, Ferguson-Smith AC. Mammalian genomic imprinting. Cold Spring Harb Perspect Biol. [ Internet]. 2011 cited 2014 Jul 14;3. Available from: http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=3119911&tool=pmcentrez&rendertype=abstract.
- Renfree MB, Suzuki S, Kaneko-Ishino T. The origin and evolution of genomic imprinting and viviparity in mammals. Philos Trans R Soc Lond B Biol Sci. [ Internet]. 2013 cited 2014 Aug 15;368:20120151. Available from: http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=3539366&tool=pmcentrez&rendertype=abstract.
- Moore T, Haig D. Genomic imprinting in mammalian development: a parental tug-of-war. Trends Genet. [ Internet]. 1991 cited 2014 Aug 27;7:45–49. Available from: http://www.ncbi.nlm.nih.gov/pubmed/2035190.
- Patten MM, Ross L, Curley JP, et al. The evolution of genomic imprinting: theories, predictions and empirical tests. Heredity (Edinb). [ Internet]. 2014 cited 2018 May 15;113:119–128. Available from: http://www.ncbi.nlm.nih.gov/pubmed/24755983.
- Choufani S, Shuman C, Weksberg R. Molecular findings in Beckwith-Wiedemann syndrome. Am J Med Genet C Semin Med Genet. [ Internet]. 2013 cited 2014 Aug 20;163C:131–140. Available from: http://www.ncbi.nlm.nih.gov/pubmed/23592339.
- Azzi S, Abi Habib W, Netchine I. Beckwith-Wiedemann and Russell-Silver Syndromes: from new molecular insights to the comprehension of imprinting regulation. Curr Opin Endocrinol Diabetes Obes. [ Internet]. 2014 cited 2014 Aug 29;21:30–38. Available from: http://www.ncbi.nlm.nih.gov/pubmed/24322424.
- Prats-Puig A, Carreras-Badosa G, Bassols J, et al. The placental imprinted DLK1-DIO3 domain: a new link to prenatal and postnatal growth in humans. Am J Obstet Gynecol. [ Internet]. 2017 cited 2018 May 15;217:350.e1-350.e13. Available from: http://www.ncbi.nlm.nih.gov/pubmed/28502757.
- St-Pierre J, Hivert M-F, Perron P, et al. IGF2 DNA methylation is a modulator of newborn’s fetal growth and development. Epigenetics. [ Internet]. 2012 cited 2015 Jan 27;7:1125–1132. Available from: http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=3469454&tool=pmcentrez&rendertype=abstract.
- Koukoura O, Sifakis S, Soufla G, et al. Loss of imprinting and aberrant methylation of IGF2 in placentas from pregnancies complicated with fetal growth restriction. Int J Mol Med. [ Internet]. 2011 cited 2018 May 15;28:481–487. Available from: http://www.spandidos-publications.com/10.3892/ijmm.2011.754.
- Gao W, Li D, Xiao Z, et al. Detection of global DNA methylation and paternally imprinted H19 gene methylation in preeclamptic placentas. Hypertens Res. [ Internet]. 2011 cited 2018 May 15;34:655–661. Available from: http://www.nature.com/articles/hr20119.
- Bourque DK, Avila L, Peñaherrera M, et al. Decreased placental methylation at the H19/IGF2 imprinting control region is associated with normotensive intrauterine growth restriction but not preeclampsia. Placenta. [ Internet]. 2010 cited 2018 May 15;31:197–202. Available from: http://linkinghub.elsevier.com/retrieve/pii/S0143400409003932.
- Guo L, Choufani S, Ferreira J, et al. Altered gene expression and methylation of the human chromosome 11 imprinted region in small for gestational age (SGA) placentae. Dev Biol. [ Internet]. 2008 cited 2018 May 15;320:79–91. Available from: http://www.ncbi.nlm.nih.gov/pubmed/18550048.
- Court F, Tayama C, Romanelli V, et al. Genome-wide parent-of-origin DNA methylation analysis reveals the intricacies of human imprinting and suggests a germline methylation-independent mechanism of establishment. Genome Res. [ Internet]. 2014 cited 2014 Aug 29;24:554–569. Available from: http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=3975056&tool=pmcentrez&rendertype=abstract.
- Joshi RS, Garg P, Zaitlen N, et al. DNA Methylation Profiling of Uniparental Disomy Subjects Provides a Map of Parental Epigenetic Bias in the Human Genome. Am J Hum Genet. [ Internet]. 2016 cited 2018 May 15;99:555–566. Available from: http://www.ncbi.nlm.nih.gov/pubmed/27569549.
- Wang X, Miller DC, Harman R, et al. Paternally expressed genes predominate in the placenta. Proc Natl Acad Sci. [ Internet]. 2013 cited 2018 Jun 28;110:10705–10710. Available from: http://www.pnas.org/cgi/doi/10.1073/pnas.1308998110.
- Bernstein BE, Stamatoyannopoulos JA, Costello JF, et al. The NIH Roadmap Epigenomics Mapping Consortium. Nat Biotechnol. [ Internet]. 2010 cited 2019 Jan 2;28:1045–1048. Available from: http://www.ncbi.nlm.nih.gov/pubmed/20944595.
- Kundaje A, Meuleman W, Ernst J, et al. Integrative analysis of 111 reference human epigenomes. Nature. [ Internet]. 2015 cited 2019 Jan 2;518:317–330. Available from: http://www.ncbi.nlm.nih.gov/pubmed/25693563.
- Boney CM, Verma A, Tucker R, et al. Metabolic syndrome in childhood: association with birth weight, maternal obesity, and gestational diabetes mellitus. Pediatrics. [ Internet]. 2005 cited 2015 Jan 22;115:e290–6. Available from: http://www.ncbi.nlm.nih.gov/pubmed/15741354.
- Van Lieshout RJ, Boyle MH. Canadian youth born large or small for gestational age and externalizing and internalizing problems. Can J Psychiatry. [ Internet]. 2011 cited 2015 Feb 4;56:227–234. Available from: http://www.ncbi.nlm.nih.gov/pubmed/21507279.
- Kappil MA, Green BB, Armstrong DA, et al. Placental expression profile of imprinted genes impacts birth weight. Epigenetics. 2015;10:842–849.
- Maunakea AK, Nagarajan RP, Bilenky M, et al. Conserved role of intragenic DNA methylation in regulating alternative promoters. Nature. [ Internet]. 2010 cited 2016 Oct 17;466:253–257. Available from: http://www.ncbi.nlm.nih.gov/pubmed/20613842.
- Lev Maor G, Yearim A, Ast G. The alternative role of DNA methylation in splicing regulation. Trends Genet. [ Internet]. 2015 cited 2019 May 23;31:274–280. Available from: http://www.ncbi.nlm.nih.gov/pubmed/25837375.
- Iglesias-Platas I, Martín Trujillo A, Court F, et al. Distinct promoter methylation and isoform-specific expression of RASFF1A in placental biopsies from complicated pregnancies. Placenta. [ Internet]. 2015 cited 2018 Jun 27;36:397–402. Available from: http://www.ncbi.nlm.nih.gov/pubmed/25703593.
- Hanna CW, Peñaherrera MS, Saadeh H, et al. Pervasive polymorphic imprinted methylation in the human placenta. Genome Res. [ Internet]. 2016 cited 2019 Jun 3;26:756–767. Available from: http://www.ncbi.nlm.nih.gov/pubmed/26769960.
- Hamada H, Okae H, Toh H, et al. Allele-specific methylome and transcriptome analysis reveals widespread imprinting in the human placenta. Am J Hum Genet. [ Internet]. 2016 cited 2019 Jun 3;99:1045–1058. Available from: http://www.ncbi.nlm.nih.gov/pubmed/27843122.
- Sanchez-Delgado M, Court F, Vidal E, et al. Human oocyte-derived methylation differences persist in the placenta revealing widespread transient imprinting. Bartolomei MS, editor. PLoS Genet. [ Internet]. 2016;12:e1006427. cited 2019 Jun 3. .
- Joshi RS, Garg P, Zaitlen N, et al. DNA methylation profiling of uniparental disomy subjects provides a map of parental epigenetic bias in the human genome. Am J Hum Genet. [ Internet]. 2016 cited 2019 Mar 19;99:555–566. Available from: http://www.ncbi.nlm.nih.gov/pubmed/27569549.
- Maynard ND, Chen J, Stuart RK, et al. Genome-wide mapping of allele-specific protein-DNA interactions in human cells. Nat Methods. [ Internet]. 2008 cited 2019 Mar 19;5:307–309. Available from: http://www.ncbi.nlm.nih.gov/pubmed/18345007.
- Prickett AR, Ishida M, Böhm S, et al. Genome-wide methylation analysis in Silver–russell syndrome patients. Hum Genet. [ Internet]. 2015 cited 2019 Mar 19;134:317–332. Available from: http://www.ncbi.nlm.nih.gov/pubmed/25563730.
- Diplas AI, Lambertini L, Lee M-J, et al. Differential expression of imprinted genes in normal and IUGR human placentas. Epigenetics. [ Internet]. 2009 cited 2015 Jul 13;4:235–240. Available from: http://www.ncbi.nlm.nih.gov/pubmed/19483473.
- Jirtle RL geneimprint [ Internet]. 2012. Available from: http://www.geneimprint.com.
- Morison IM, Ramsay JP, Spencer HG. A census of mammalian imprinting. Trends Genet. [ Internet]. 2005 cited 2014 Sep 8;21:457–465. Available from: http://www.ncbi.nlm.nih.gov/pubmed/15990197.
- Wang H, Bender A, Wang P, et al. Insights into beta cell regeneration for diabetes via integration of molecular landscapes in human insulinomas. Nat Commun. [ Internet]. 2017 cited 2019 Jan 9;8:767. Available from: http://www.ncbi.nlm.nih.gov/pubmed/28974674.
- Kappil MA, Green BB, Armstrong DA, et al. Placental Expression Profile of Imprinted Genes Impacts Birth Weight. Epigenetics [ Internet]. 2015 cited 2015 Jul 28; Available from: http://www.ncbi.nlm.nih.gov/pubmed/26186239.
- Shabalin AA. Matrix eQTL: ultra fast eQTL analysis via large matrix operations. Bioinformatics. [ Internet]. 2012 cited 2018 May 21;28:1353–1358. Available from: http://www.ncbi.nlm.nih.gov/pubmed/22492648.
- Davis JR, Fresard L, Knowles DA, et al. An efficient multiple-testing adjustment for eQTL studies that accounts for linkage disequilibrium between variants. Am J Hum Genet. [ Internet]. 2016 cited 2018 Jun 13;98:216–224. Available from: http://linkinghub.elsevier.com/retrieve/pii/S0002929715004929.
- Peters TJ, Buckley MJ, Statham AL, et al. De novo identification of differentially methylated regions in the human genome [Internet]. Epigenetics Chromatin. 2015 [cited 2015 Mar 10]. Available from: http://www.epigeneticsandchromatin.com/content/pdf/1756-8935-8-6.pdf.
- Feng H, Conneely KN, Wu H. A Bayesian hierarchical model to detect differentially methylated loci from single nucleotide resolution sequencing data. Nucleic Acids Res. [ Internet]. 2014 cited 2018 Jun 18;42:e69–e69. Available from: http://www.ncbi.nlm.nih.gov/pubmed/24561809.
- Akalin A, Franke V, Vlahoviček K, et al. Genomation: a toolkit to summarize, annotate and visualize genomic intervals. Bioinformatics. [ Internet]. 2015 cited 2018 Jun 18;31:1127–1129. Available from: https://academic.oup.com/bioinformatics/article-lookup/doi/10.1093/bioinformatics/btu775.
- Albrecht F, List M, Bock C, et al. DeepBlueR: large-scale epigenomic analysis in R. Wren J, editor. Bioinformatics. [ Internet]. 2017 cited 2019 Jan 2;33:2063–2064. Available from: https://academic.oup.com/bioinformatics/article/33/13/2063/3045024.