Identification cloning and functional analysis of novel natural antisense lncRNA CFL1-AS1 in cattle

References

• Fatica A, Bozzoni I. Long non-coding RNAs: new players in cell differentiation and development. Nat Rev Genet. 2014;15(1):7–14. doi: 10.1038/nrg3606
   PubMed Web of Science ®Google Scholar
• Khorkova O, Myers AJ, Hsiao J, et al. Natural antisense transcripts. Hum Mol Genet. 2014;23(R1):R54–63. doi: 10.1093/hmg/ddu207
   PubMedGoogle Scholar
• Katayama S, Tomaru Y, Kasukawa T, et al. Antisense transcription in the mammalian transcriptome. Science. 2005;309(5740):1564–1566. doi: 10.1126/science.1112009
   PubMed Web of Science ®Google Scholar
• Tufarelli C, Stanley JA, Garrick D, et al. Transcription of antisense RNA leading to gene silencing and methylation as a novel cause of human genetic disease. Nat Genet. 2003;34:157–165. doi: 10.1038/ng1157
   PubMed Web of Science ®Google Scholar
• Cheng H, Zhang ES, Shi X, et al. A novel ATM antisense transcript ATM-AS positively regulates ATM expression in normal and breast cancer cells. Curr Med Sci. 2022;42:681–691. doi: 10.1007/s11596-022-2585-5
   PubMed Web of Science ®Google Scholar
• Ren L, Fang X, Shrestha SM, et al. LncRNA SNHG16 promotes development of oesophageal squamous cell carcinoma by interacting with EIF4A3 and modulating RhoU mRNA stability. Cell Mol Biol Lett. 2022;27(1):89. doi: 10.1186/s11658-022-00386-w
   PubMed Web of Science ®Google Scholar
• Faghihi MA, Modarresi F, Khalil AM, et al. Expression of a noncoding RNA is elevated in Alzheimer’s disease and drives rapid feed-forward regulation of beta-secretase. Nat Med. 2008;14:723–730. doi: 10.1038/nm1784
   PubMed Web of Science ®Google Scholar
• Wang C, Yu H, Lu S, et al. LncRNA Hnf4αos exacerbates liver ischemia/reperfusion injury in mice via Hnf4αos/Hnf4α duplex-mediated PGC1α suppression. Redox Biol. 2022;57:102498. doi: 10.1016/j.redox.2022.102498
   PubMed Web of Science ®Google Scholar
• Vujovic F, Rezaei-Lotfi S, Hunter N, et al. The fate of notch-1 transcript is linked to cell cycle dynamics by activity of a natural antisense transcript. Nucleic Acids Res. 2021;49(18):10419–10430. doi: 10.1093/nar/gkab800
   PubMed Web of Science ®Google Scholar
• Yuan XH, Li J, Cao Y, et al. Long non-coding RNA AFAP1-AS1 promotes proliferation and migration of gastric cancer by downregulating KLF2. Eur Rev Med Pharmacol Sci. 2020;24(2):673–680. doi: 10.26355/eurrev_202001_20044
   PubMed Web of Science ®Google Scholar
• Zhang CL, Zhu KP, Ma XL. Antisense lncRNA FOXC2-AS1 promotes doxorubicin resistance in osteosarcoma by increasing the expression of FOXC2. Cancer Lett. 2017;396:66–75. doi: 10.1016/j.canlet.2017.03.018
   PubMed Web of Science ®Google Scholar
• Alfano G, Vitiello C, Caccioppoli C, et al. Natural antisense transcripts associated with genes involved in eye development. Hum Mol Genet. 2005;14(7):913–923. doi: 10.1093/hmg/ddi084
   PubMed Web of Science ®Google Scholar
• Watanabe T, Totoki Y, Toyoda A, et al. Endogenous siRnas from naturally formed dsRnas regulate transcripts in mouse oocytes. Nature. 2008;453(7194):539–543. doi: 10.1038/nature06908
   PubMed Web of Science ®Google Scholar
• Wang Y, Xue S, Liu X, et al. Analyses of long non-coding RNA and mRNA profiling using RNA sequencing during the pre-implantation phases in pig endometrium. Sci Rep. 2016;6(1):20238. doi: 10.1038/srep20238
   PubMedGoogle Scholar
• Wang Z, Xu H, Li T, et al. Chicken GHR antisense transcript regulates its sense transcript in hepatocytes. Gene. 2019;682:101–110. doi: 10.1016/j.gene.2018.10.001
   PubMed Web of Science ®Google Scholar
• Lin S, Zhang Z, Xie T, et al. Identi?cation of a novel antisense RNA that regulates growth hormone receptor expression in chickens. RNA Biol. 2019;16(5):626–638. doi: 10.1080/15476286.2019.1572440
   PubMed Web of Science ®Google Scholar
• Sun Y, Ma Y, Zhao T, et al. Epigenetic regulation mechanisms of the cofilin-1 gene in the development and differentiation of bovine primary myoblasts. Genes (Basel). 2022;13(5). doi: 10.3390/genes13050723
   Web of Science ®Google Scholar
• Sun Y, Ma Y, Wu X, et al. Functional and comparative analysis of two subtypes of cofilin family on cattle myoblasts differentiation. Agriculture. 2022;12(9):1420. doi: 10.3390/agriculture12091420
   Google Scholar
• Song C, Wang J, Ma Y, et al. Linc-smad7 promotes myoblast differentiation and muscle regeneration via sponging miR-125b. Epigenetics. 2018;13(6):591–604. doi: 10.1080/15592294.2018.1481705
   PubMed Web of Science ®Google Scholar
• Scotto-Lavino E, Du G, Frohman MA. 5’ end cDNA amplification using classic RACE. Nat Protoc. 2006;1:2555–2562. doi: 10.1038/nprot.2006.480
   PubMedGoogle Scholar
• Yu W, Gius D, Onyango P, et al. Epigenetic silencing of tumour suppressor gene p15 by its antisense RNA. Nature. 2008;451(7175):202–206. doi: 10.1038/nature06468
   PubMed Web of Science ®Google Scholar
• Parnigoni A, Caon I, Teo WX, et al. The natural antisense transcript HAS2-AS1 regulates breast cancer cells aggressiveness independently from hyaluronan metabolism. Matrix Biol. 2022;109:140–161. doi: 10.1016/j.matbio.2022.03.009
   PubMed Web of Science ®Google Scholar
• Chen J, Sun M, Kent WJ, et al. Over 20% of human transcripts might form sense-antisense pairs. Nucleic Acids Res. 2004;32:4812–4820. doi: 10.1093/nar/gkh818
   PubMed Web of Science ®Google Scholar
• Carninci P, Kasukawa T, Katayama S, et al. The transcriptional landscape of the mammalian genome. Science. 2005;309(5740):1559–1563. doi: 10.1126/science.1112014
   PubMed Web of Science ®Google Scholar
• Niehus SE, Allister AB, Hoffmann A, et al. Myc/Max dependent intronic long antisense noncoding RNA, EVA1A-AS, suppresses the expression of Myc/Max dependent anti-proliferating gene EVA1A in a U2 dependent manner. Sci Rep. 2019;9(1):17319. doi: 10.1038/s41598-019-53944-2
   PubMedGoogle Scholar
• Wu Z, Fan H, Jin J, et al. Insight into mechanisms of pig lncRNA FUT3-AS1 regulating E. coli F18-bacterial diarrhea. PLOS Pathog. 2022;18(6):e1010584. doi: 10.1371/journal.ppat.1010584
   PubMed Web of Science ®Google Scholar
• Song C, Yang Z, Jiang R, et al. lncRNA IGF2 as regulates bovine myogenesis through different pathways. Mol Ther Nucleic Acids. 2020;21:874–884. doi: 10.1016/j.omtn.2020.07.002
   PubMedGoogle Scholar
• Zhao Z, Qiao L, Dai Z, et al. LncNONO-AS regulates AR expression by mediating NONO. Theriogenology. 2020;145:198–206. doi: 10.1016/j.theriogenology.2019.10.025
   PubMed Web of Science ®Google Scholar
• Johnsson P, Lipovich L, Grandér D, et al. Evolutionary conservation of long non-coding RNAs; sequence, structure, function. Biochim Biophys Acta. 2014;1840(3):1063–1071. doi: 10.1016/j.bbagen.2013.10.035
   PubMed Web of Science ®Google Scholar
• Chen LL. Linking long noncoding RNA localization and function. Trends Biochem Sci. 2016;41(9):761–772. doi: 10.1016/j.tibs.2016.07.003
   PubMed Web of Science ®Google Scholar
• Kour S, Rath PC. Long noncoding RNAs in aging and age-related diseases. Ageing Res Rev. 2016;26:1–21. doi: 10.1016/j.arr.2015.12.001
   PubMed Web of Science ®Google Scholar
• Statello L, Guo CJ, Chen LL, et al. Gene regulation by long non-coding RNAs and its biological functions. Nat Rev Mol Cell Biol. 2021;22(2):96–118. doi: 10.1038/s41580-020-00315-9
   PubMed Web of Science ®Google Scholar
• Yoon JH, Abdelmohsen K, Gorospe M. Posttranscriptional gene regulation by long noncoding RNA. J Mol Biol. 2013;425(19):3723–3730. doi: 10.1016/j.jmb.2012.11.024
   PubMed Web of Science ®Google Scholar
• Novikova IV, Hennelly SP, Sanbonmatsu KY. Sizing up long non-coding RNAs: do lncRnas have secondary and tertiary structure? Bioarchitecture. 2012;2:189–199. doi: 10.4161/bioa.22592
   PubMedGoogle Scholar
• Ma Y, Zhao T, Wu X, et al. Expression profile and functional prediction of novel LncRNA 5.8S rRNA-OT1 in cattle. Anim Biotechnol. 2022;1–11. doi: 10.1080/10495398.2022.2066540
   Web of Science ®Google Scholar
• Zhao F, Li S, Liu J, et al. Long non-coding RNA TRIM52-AS1 sponges microRNA-577 to facilitate diffuse large B cell lymphoma progression via increasing TRIM52 expression. Hum Cell. 2022;35(4):1234–1247. doi: 10.1007/s13577-022-00725-1
   PubMed Web of Science ®Google Scholar
• Zhu L, Wei Q, Qi Y, et al. PTB-AS, a novel natural antisense transcript, promotes glioma progression by improving PTBP1 mRNA stability with SND1. Mol Ther. 2019;27(9):1621–1637. doi: 10.1016/j.ymthe.2019.05.023
   PubMed Web of Science ®Google Scholar
• Li JT, Zhang Y, Kong L, et al. Trans-natural antisense transcripts including noncoding RNAs in 10 species: implications for expression regulation. Nucleic Acids Res. 2008;36(15):4833–4844. doi: 10.1093/nar/gkn470
   PubMed Web of Science ®Google Scholar
• Lease RA, Belfort M. A trans-acting RNA as a control switch in Escherichia coli: DsrA modulates function by forming alternative structures. Proc Natl Acad Sci U S A. 2000;97(18):9919–9924. doi: 10.1073/pnas.170281497
   PubMed Web of Science ®Google Scholar
• Cabili MN, Trapnell C, Goff L, et al. Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses. Genes Dev. 2011;25(18):1915–1927. doi: 10.1101/gad.17446611
   PubMed Web of Science ®Google Scholar
• Bozal-Basterra L, Gonzalez-Santamarta M, Muratore V, et al. LUZP1 controls cell division, migration and invasion through regulation of the actin cytoskeleton. Front Cell Dev Biol. 2021;9:624089. doi: 10.3389/fcell.2021.624089
   PubMed Web of Science ®Google Scholar
• Asfour HA, Allouh MZ, Said RS. Myogenic regulatory factors: the orchestrators of myogenesis after 30 years of discovery. Exp Biol Med (Maywood). 2018;243(2):118–128. doi: 10.1177/1535370217749494
   PubMed Web of Science ®Google Scholar
• Juríková M, Danihel Ľ, Polák Š, et al.: Ki67, PCNA, and MCM proteins: markers of proliferation in the diagnosis of breast cancer. Acta Histochem 2016, 118:544–552.
   Google Scholar
• Belső N, Gubán B, Manczinger M, et al. Differential role of D cyclins in the regulation of cell cycle by influencing Ki67 expression in HaCaT cells. Exp Cell Res. 2019;374(2):290–303. doi: 10.1016/j.yexcr.2018.11.030
   PubMed Web of Science ®Google Scholar
• McNutt MC, Lagace TA, Horton JD. Catalytic activity is not required for secreted PCSK9 to reduce low density lipoprotein receptors in HepG2 cells. J Biol Chem. 2007;282(29):20799–20803. doi: 10.1074/jbc.C700095200
   PubMed Web of Science ®Google Scholar