References
- Khush GS. Origin, dispersal, cultivation and variation of rice. Plant Mol Biol. 1997;35(1–2):1–8.. doi:https://doi.org/10.1023/A:1005810616885.
- Wang Y, Li J. Rice, rising. Nat Genet. 2008;40(11):1273–1275.doi:https://doi.org/10.1038/ng1108-1273.
- Sakamoto T, Morinaka Y, Ohnishi T, Sunohara H, Fujioka S, Ueguchi-Tanaka M, Mizutani M, Sakata K, Takatsuto S, Yoshida S, et al. Erect leaves caused by brassinosteroid deficiency increase biomass production and grain yield in rice. Nat Biotechnol. 2006;24(1):105–109. doi:https://doi.org/10.1038/nbt1173.
- Ning Y, Liu W, Wang GL. Balancing immunity and yield in crop plants. Trends Plant Sci. 2017;22(12):1069–1079. doi:https://doi.org/10.1016/j.tplants.2017.09.010.
- Chen Y, Fan X, Song W, Zhang Y, Xu G. Over-expression of OsPIN2 leads to increased tiller numbers, angle and shorter plant height through suppression of OsLAZY1. Plant Biotechnol J. 2012;10(2):139–149. doi:https://doi.org/10.1111/j.1467-7652.2011.00637.x.
- Xu M, Zhu L, Shou H, Wu P. A PIN1 family gene, OsPIN1, involved in auxin-dependent adventitious root emergence and tillering in rice. Plant Cell Physiol. 2005;46(10):1674–1681.doi:https://doi.org/10.1093/pcp/pci183.
- Li P, Wang Y, Qian Q, Fu Z, Wang M, Zeng D, Li B, Wang X, Li J. LAZY1 controls rice shoot gravitropism through regulating polar auxin transport. Cell Res. 2007;17(5):402–410. doi:https://doi.org/10.1038/cr.2007.38.
- Li ZKPA, Pinson SRM, Stansel JW. RFLP facilitated analysis of tiller and leaf angles in rice (Oryza sativa L.). Euphytica. 1999;109:79–84. doi:https://doi.org/10.1023/A:1003533001014.
- Yu B, Lin Z, Li H, Li X, Li J, Wang Y, Zhang X, Zhu Z, Zhai W, Wang X, et al. TAC1, a major quantitative trait locus controlling tiller angle in rice. Plant J. 2007;52(5):891–898. doi:https://doi.org/10.1111/j.1365-313X.2007.03284.x.
- Tan L, Li X, Liu F, Sun X, Li C, Zhu Z, Fu Y, Cai H, Wang X, Xie D, et al. Control of a key transition from prostrate to erect growth in rice domestication. Nat Genet. 2008;40(11):1360–1364. doi:https://doi.org/10.1038/ng.197.
- Savary S, Castilla NP, Elazegui FA, McLaren CG, Ynalvez MA, Teng PS. Direct and indirect effects of nitrogen supply and disease source structure on rice sheath blight spread. Phytopathology. 1995;85:959–965. doi:https://doi.org/10.1094/Phyto-85-959.
- Savary S, Willocquet L, Elazegui FA, Castilla NP, Teng PS. Rice pest constraints in Tropical Asia: quantification of yield losses due to rice pests in a range of production situations. Plant Dis. 2000;84(3):357–369.doi:https://doi.org/10.1094/pdis.2000.84.3.357.
- Sun Q, Liu Y, Wang ZY, Li S, Ye L, Xie JX, Zhao GQ, Wang HN, Wang Y, Li S, et al. Isolation and characterization of genes related to sheath blight resistance via the tagging of mutants in rice. Plant Gene. 2019;19:10020. doi:https://doi.org/10.1016/j.plgene.2019.100200.
- Sun Q, Li TY, Li DD, Wang ZY, Li S, Li DP, Han X, Liu JM, Xuan YH. Overexpression of loose plant architecture 1 increases planting density and resistance to sheath blight disease via activation of PIN-FORMED 1a in rice. Plant Biotechnol J. 2019;17(5):855–857. doi:https://doi.org/10.1111/pbi.13072.
- Colasanti J, Yuan Z, Sundaresan V. The indeterminate gene encodes a zinc finger protein and regulates a leaf-generated signal required for the transition to flowering in maize. Cell. 1998;93(4):593–603. doi:https://doi.org/10.1016/S0092-8674(00)81188-5.
- Park SJ, Kim SL, Lee S, Je BI, Piao HL, Park SH, Kim CM, Ryu C-H, Park SH, Xuan Y-H, et al. Rice Indeterminate 1 (OsId1) is necessary for the expression of Ehd1 (Early heading date 1) regardless of photoperiod. Plant J. 2008;56(6):1018–1029. doi:https://doi.org/10.1111/j.1365-313X.2008.03667.x.
- Welch D, Hassan H, Blilou I, Immink R, Heidstra R, Scheres B. Arabidopsis JACKDAW and MAGPIE zinc finger proteins delimit asymmetric cell division and stabilize tissue boundaries by restricting SHORT-ROOT action. Genes Dev. 2007;21(17):2196–2204. doi:https://doi.org/10.1101/gad.440307.
- Feurtado JA, Huang D, Wicki-Stordeur L, Hemstock LE, Potentier MS, Tsang EW, Cutler AJ. The Arabidopsis C2H2 zinc finger INDETERMINATE DOMAIN1/ENHYDROUS promotes the transition to germination by regulating light and hormonal signaling during seed maturation. Plant Cell. 2011;23(5):1772–1794.doi:https://doi.org/10.1105/tpc.111.085134.
- Seo PJ, Ryu J, Kang SK, Park CM. Modulation of sugar metabolism by an INDETERMINATE DOMAIN transcription factor contributes to photoperiodic flowering in Arabidopsis. Plant J. 2011;65(3):418–429. doi:https://doi.org/10.1111/j.1365-313X.2010.04432.x.
- Cui D, Zhao J, Jing Y, Fan M, Liu J, Wang Z, Xin W, Hu Y. The arabidopsis IDD14, IDD15, and IDD16 cooperatively regulate lateral organ morphogenesis and gravitropism by promoting auxin biosynthesis and transport. PLoS Genet. 2013;9(9):e1003759. doi:https://doi.org/10.1371/journal.pgen.1003759.
- Wu X, Tang D, Li M, Wang K, Cheng Z. Loose plant architecture1, an indeterminate domain protein involved in shoot gravitropism, regulates plant architecture in rice. Plant Physiol. 2013;161(1):317–329. doi:https://doi.org/10.1104/pp.112.208496.
- Liu JM, Park SJ, Huang J, Lee EJ, Xuan YH, Je BI, Kumar V, Priatama RA, Raj K V, Kim SH, et al. Loose Plant Architecture1 (LPA1) determines lamina joint bending by suppressing auxin signalling that interacts with C-22-hydroxylated and 6-deoxo brassinosteroids in rice. J Exp Bot. 2016;67(6):1883–1895. doi:https://doi.org/10.1093/jxb/erw002.
- Dou M, Cheng S, Zhao B, Xuan Y, Shao M. The indeterminate domain protein ROC1 regulates chilling tolerance via activation of DREB1B/CBF1 in rice. Int J Mol Sci. 2016;17(3):233.doi:https://doi.org/10.3390/ijms17030233.
- Huang P, Yoshida H, Yano K, Kinoshita S, Kawai K, Koketsu E, Hattori M, Takehara S, Huang J, Hirano K, et al. OsIDD2, a zinc finger and INDETERMINATE DOMAIN protein, regulates secondary cell wall formation. J Integr Plant Biol. 2018;60(2):130–143. doi:https://doi.org/10.1111/jipb.12557.
- Volz R, Kim SK, Mi J, Mariappan KG, Siodmak A, Al-Babili S, Hirt H. A chimeric IDD4 repressor constitutively induces immunity in Arabidopsis via the modulation of salicylic- and jasmonic acid homeostasis. Plant Cell Physiol. 2019;60:1536–1555. doi:https://doi.org/10.1093/pcp/pcz057.
- Kozaki A, Hake S, Colasanti J. The maize ID1 flowering time regulator is a zinc finger protein with novel DNA binding properties. Nucleic Acids Res. 2004;32(5):1710–1720. doi:https://doi.org/10.1093/nar/gkh337.
- Xuan YH, Priatama RA, Huang J, Je BI, Liu JM, Park SJ, Piao HL, Son DY, Lee JJ, Park SH, et al. Indeterminate domain 10 regulates ammonium-mediated gene expression in rice roots. New Phytol. 2013;197(3):791–804. doi:https://doi.org/10.1111/nph.12075.
- An S, Park S, Jeong DH, Lee DY, Kang HG, Yu JH, Hur J, Kim S-R, Kim Y-H, Lee M, et al. Generation and analysis of end sequence database for T-DNA tagging lines in rice. Plant Physiol. 2003;133(4):2040–2047. doi:https://doi.org/10.1104/pp.103.030478.
- Prasad B, Eizenga GC. Rice sheath blight disease resistance identified in oryza spp. accessions. Plant Dis. 2008;92(11):1503–1509. doi:https://doi.org/10.1094/pdis-92-11-1503.
- Je BI, Piao HL, Park SJ, Park SH, Kim CM, Xuan YH, Park SH, Huang J, Do Choi Y, An G, et al. RAV-Like1 maintains brassinosteroid homeostasis via the coordinated activation of BRI1 and biosynthetic genes in rice. Plant Cell. 2010;22(6):1777–1791. doi:https://doi.org/10.1105/tpc.109.069575.
- Yamaguchi M, Ohtani M, Mitsuda N, Kubo M, Ohme-Takagi M, Fukuda H, Demura T. VND-INTERACTING2, a NAC domain transcription factor, negatively regulates xylem vessel formation in Arabidopsis. Plant Cell. 2010;22(4):1249–1263. doi:https://doi.org/10.1105/tpc.108.064048.
- Yoo SD, Cho YH, Sheen J. Arabidopsis mesophyll protoplasts: a versatile cell system for transient gene expression analysis. Nat Protoc. 2007;2(7):1565–1572. doi:https://doi.org/10.1038/nprot.2007.199.
- Bennett MJ, Marchant A, Green HG, May ST, Ward SP, Millner PA, Walker AR, Schulz B, Feldmann KA. Arabidopsis AUX1 gene: a permease-like regulator of root gravitropism. Science (New York, NY). 1996;273(5277):948–950. doi:https://doi.org/10.1126/science.273.5277.948.
- Blilou I, Xu J, Wildwater M, Willemsen V, Paponov I, Friml J, Heidstra R, Aida M, Palme K, Scheres B, et al. The PIN auxin efflux facilitator network controls growth and patterning in Arabidopsis roots. Nature. 2005;433(7021):39–44.doi:https://doi.org/10.1038/nature03184.
- Sun Q, Li DD, Chu J, Yuan DP, Li S, Zhong LJ, Han X, Xuan YH. Indeterminate domain proteins regulate rice defense to sheath blight disease. Rice (New York, NY). 2020;13(1):15. Epub 2020/03/07. doi:https://doi.org/10.1186/s12284-020-0371-1.