Characterization of dwarf and narrow leaf (dnl-4) mutant in rice

Reference

• Walter A, Silk WK, Schurr U. Environmental effects on spatial and temporal patterns of leaf and root growth. Annu Rev Plant Biol. 2009;60(1):1–9. doi:10.1146/annurev.arplant.59.032607.092819.
   PubMedGoogle Scholar
• Govaerts YM, Jacquemoud S, Verstraete MM, Ustin SL. Three-dimensional radiation transfer modeling in a dicotyledon leaf. Appl Opt. 1996;35(33):6585–6598. doi:10.1364/AO.35.006585.
   PubMed Web of Science ®Google Scholar
• Denning, G.L. & Mew, T.W., 1997. China and IRRI” Improving China's rice productivity in the 21st century. IRRI Discussion Papers 287591, International Rice Research Institute (IRRI).
   Google Scholar
• Tsukaya H. Mechanism of leaf-shape determination. Annu Rev Plant Biol. 2006;57(1):477–496. doi:10.1146/annurev.arplant.57.032905.105320.
   PubMedGoogle Scholar
• Lang YZ, Zhang ZJ, Gu XY, Yang JC, Zhu QS. Physiological and ecological effects of crimpy leaf character in rice (Oryza sativa L.) II. Photosynthetic character, dry mass production and yield forming. Acta Agron Sin. 2004;30:883–887.
   Google Scholar
• Zhang GH, Xu Q, Zhu XD, Qian Q, Xue HW. SHALLOT-LIKE1 is a KANADI transcription factor that modulates rice leaf rolling by regulating leaf abaxial cell development. Plant Cell. 2009;21(3):719–735. doi:10.1105/tpc.108.061457.
   PubMed Web of Science ®Google Scholar
• Koch G, Rolland G, Dauzat M, Bédiée A, Baldazzi V, Bertin N, Guédon Y, Granier C. Leaf production and expansion: a generalized response to drought stresses from cells to whole leaf biomass—a case study in the tomato compound leaf. Plants. 2019;8(10):409. doi:10.3390/plants8100409.
   Google Scholar
• Adedze YMN, Wei XJ, Sheng ZH, Jiao GA, Tang SQ, Hu PS. Characterization of a rice dwarf and narrow leaf 2 mutant. Biologia Plantarum. 2016;61(1):85–94. doi:10.1007/s10535-016-0632-4.
   Web of Science ®Google Scholar
• Weingartner M, Pelayo HR, Binarova P, Zwerger K, Melikant B, Torre C, Heberle-Bors E, Bögre L. A plant cyclin B2 is degraded early in mitosis and its ectopic expression shortens G2-phase and alleviates the DNA-damage checkpoint. J Cell Sci. 2003;116(3):487–498. doi:10.1242/jcs.00250.
   PubMed Web of Science ®Google Scholar
• Zhao SQ, Hu J, Guo LB, Qian Q, Xue HW. Rice leaf inclination2, a VIN3-like protein, regulates leaf angle through modulating cell division of the collar. Cell Res. 2010;20(8):935–947. doi:10.1038/cr.2010.109.
   PubMed Web of Science ®Google Scholar
• Zou LP, Sun XH, Zhang ZG, Liu P, Wu JX, Tian CJ, Qiu JL, Lu TG. Leaf rolling controlled by the homeodomain leucine zipper class IV gene Roc5 in rice. Plant Physiol. 2011;156(3):1589–1602. doi:10.1104/pp.111.176016.
   PubMed Web of Science ®Google Scholar
• Qi J, Qian Q, Bu Q, Li S, Chen Q, Sun J, Liang W, Zhou Y, Chu C, Li X, et al. Mutation of the rice Narrow leaf1 gene, which encodes a novel protein, affects vein patterning and polar auxin transport. Plant Physiol. 2008;147(4):1947–1959. doi:10.1104/pp.108.118778.
   PubMed Web of Science ®Google Scholar
• Fujino K, Mastuda Y, Ozawa K, Nishimura T, Koshiba T, Fraaije MW, Sekiguchi H. NARROW LEAF 7 controls leaf shape mediated by auxin in rice. Mol Genetics Genomics. 2008;279(5):499–507. doi:10.1007/s00438-008-0328-3.
   PubMed Web of Science ®Google Scholar
• Li M, Xiong G, Li R, Cui J, Tang D, Zhang B, Pauly M, Cheng Z, Zhou Y. Rice cellulose synthase‐like D4 is essential for normal cell‐wall biosynthesis and plant growth. Plant J. 2009;60(6):1055–1069. doi:10.1111/j.1365-313X.2009.04022.x.
   PubMed Web of Science ®Google Scholar
• Park J, Gupta RS. Adenosine kinase and ribokinase–the RK family of proteins. Cell Mol Life Sci. 2008;65(18):2875–2896. doi:10.1007/s00018-008-8123-1.
   PubMed Web of Science ®Google Scholar
• Pego JV, Smeekens SC. Plant fructokinases: a sweet family get-together. Trends Plant Sci. 2000;5(12):531–536. doi:10.1016/S1360-1385(00)01783-0.
   PubMed Web of Science ®Google Scholar
• Stein O, Granot D. Plant fructokinases: evolutionary, developmental, and metabolic aspects in sink tissues. Front Plant Sci. 2018;9:339. doi:10.3389/fpls.2018.00339.
   PubMed Web of Science ®Google Scholar
• Gilkerson J, Perez-Ruiz JM, Chory J, Callis J. The plastid-localized pfkB-type carbohydrate kinases FRUCTOKINASE-LIKE 1 and 2 are essential for growth and development of Arabidopsis thaliana. BMC Plant Biol. 2012;12(1):102. doi:10.1186/1471-2229-12-102.
   PubMedGoogle Scholar
• He L, Zhang S, Qiu Z, Zhao J, Nie W, Lin H, Zhu Z, Zeng D, Qian Q, Zhu L. Fructokinase-like protein 1 interacts with TRXz to regulate chloroplast development in rice. J Integr Plant Biol. 2018;60(2):94–111. doi:10.1111/jipb.12631.
   PubMed Web of Science ®Google Scholar
• Lv Y, Shao G, Qiu J, Jiao G, Sheng Z, Xie L, Wu Y, Tang S, Wei X, Hu P. White Leaf and Panicle 2, encoding a PEP-associated protein, is required for chloroplast biogenesis under heat stress in rice. J Exp Bot. 2017;68(18):5147–5160. doi:10.1093/jxb/erx332.
   PubMed Web of Science ®Google Scholar
• Kolesnik T, Szeverenyi I, Bachmann D, Kumar CS, Jiang S, Ramamoorthy R, Cai M, Ma ZG, Sundaresan V, Ramachandran S. Establishing an efficient Ac/Ds tagging system in rice: large‐scale analysis of Ds flanking sequences. Plant J. 2004;37(2):301–314. doi:10.1046/j.1365-313x.2003.01948.x.
   PubMed Web of Science ®Google Scholar
• Moreno MA, Chen J, Greenbaltt I, Dellaporta SL. Reconstitutional mutagenesis of the maize P gene by short-range Ac transpositions. Genetics. 1992;131:939–956.
   PubMed Web of Science ®Google Scholar
• Pooma W, Gersos C, Grotewold E. Transposon insertions in the promoter of the Zea mays a1 gene differentially affect transcription by the Myb factors P and C1. Genetics. 2002;161:793–801.
   PubMed Web of Science ®Google Scholar
• Clarke JD. Cetyltrimethyl ammonium bromide (CTAB) DNA miniprep for plant DNA isolation. Cold Spring Harbor Protoc. 2009:5177–5178. doi:10.1101/pdb.prot5177.
   Google Scholar
• Ochman H, Gerber AS, Hartl DL. Genetic applications of an inverse polymerase chain reaction. Genetics. 1988;120:621–623.
   PubMed Web of Science ®Google Scholar
• Simms D, Cizdziel PE, Chomczynski P. TRIZOL™: A new reagent for optimal single-step isolation of RNA. Focus. 1993;15:99–102.
   Google Scholar
• Chieco C, Rotondi A, Morrene L, Rapparini F, Baraldi R. An ethanol-based fixation method for anatomical and micro-morphological characterization of leaves of various tree species. Biotech Histochem. 2012;88(2):109–119. doi:10.3109/10520295.2012.746472.
   PubMed Web of Science ®Google Scholar
• Yang JW, Fu JX, Li J, Cheng XL, Li F, Dong JF, Liu ZL, Zhuang CX. A novel co-immunoprecipitation protocol based on protoplast transient gene expression for studying protein–protein interactions in rice. Plant Mol Biol Rep. 2014;32(1):153–161. doi:10.1007/s11105-013-0633-9.
   Web of Science ®Google Scholar
• Kim CM, Piao HL, Park SJ, Chon NS, Je BI, Sun B, Park SH, Park JY, Lee EJ, Kim MJ, et al. Rapid, large-scale generation of Ds transposant lines and analysis of the Ds insertion sites in rice. Plant J. 2004;39(2):252–263. doi:10.1111/j.1365-313X.2004.02116.x.
   PubMed Web of Science ®Google Scholar
• Ogawa T, Nishimura K, Aokin T, Takase H, Tomizawa KI, Ashida H, Yokota A. A phosphofructokinase B-type carbohydrate kinase family protein, NARA5, for massive expressions of plastid-encoded photosynthetic genes in Arabidopsis. Plant Physiol. 2009;151(1):114–128. doi:10.1104/pp.109.139683.
   PubMed Web of Science ®Google Scholar
• Qiu Z, Kang S, He L, Zhao J, Zhang S, Hu J, Zeng D, Zhang G, Dong G, Gao Z, et al. The newly identified heat-stress sensitive albino 1 gene affects chloroplast development in rice. Plant Sci. 2018;267:168–179. doi:10.1016/j.plantsci.2017.11.015.
   PubMed Web of Science ®Google Scholar
• Yamaguchi T, Nagasawa N, Kawasaki S, Mastuoka M, Nagato Y, Hirano HY. The YABBY gene DROOPING LEAF regulates carpel specification and midrib development in Oryza sativa. Plant Cell. 2004;16(2):500–509. doi:10.1105/tpc.018044.
   PubMed Web of Science ®Google Scholar
• Li L, Shi ZY, Li L, Shen GZ, Wang XQ, An LS, Zhang JL. Overexpression of ACL1 (abaxially curled leaf 1) increased bulliform cells and induced abaxial curling of leaf blades in rice. Mol Plant. 2010;3(5):807–817. doi:10.1093/mp/ssq022.
   PubMed Web of Science ®Google Scholar
• Jane WN, Chiang SHT. Morphology and development of bulliform cells in Arundo Formosana Hack. Taiwania. 1991;36(1):85-97. doi:10.6165/tai.1991.36.85.
   Google Scholar
• O’toole JC, Cruz RT, Singh TN. Leaf rolling and transpiration. Plant Sci Letters. 1979;16(1):111–114. doi:10.1016/0304-4211(79)90015-4.
   Web of Science ®Google Scholar
• O’Toole JC, Cruz RT. Response of leaf water potential, stomatal resistance, and leaf rolling to water stress. Plant Physiol. 1980;65(3):428–432. doi:10.1104/pp.65.3.428.
   PubMed Web of Science ®Google Scholar
• Wei XJ, Tang SQ, Shao GN, Chen ML, Hu YC, Hu PS. Fine mapping and characterization of a novel dwarf and narrow-leaf mutant dnl1 in rice. Genet Mol Res. 2013;12(3):3845–3855. doi:10.4238/2013.September.23.2.
   PubMed Web of Science ®Google Scholar
• Shi L, Wei XJ, Adedze YMN, Sheng ZH, Tang SQ, Hu PS, Wang JL. Characterization and gene cloning of the rice (Oryza sativa L.) dwarf and narrow-leaf mutant dnl3. Genet Mol Res. 2016;15(3). doi:10.4238/gmr.15038731.
   Web of Science ®Google Scholar
• Sazuka T, Kamiya N, Nishimura T, Ohmae K, Sato Y, Imamura K, Nagato Y, Koshiba T, Nagamura Y, Ashikari M, et al. A rice tryptophan deficient dwarf mutant, tdd1, contains a reduced level of indole acetic acid and develops abnormal flowers and organless embryos. Plant J. 2009;60(2):227–241. doi:10.1111/j.1365-313X.2009.03952.x.
   PubMed Web of Science ®Google Scholar
• Zhao J, Wang T, Wang M, Liu Y, Yuan S, Gao Y, Yin L, Sun W, Peng L, Zhang W, et al. DWARF3 participates in an SCF complex and associates with DWARF14 to suppress rice shoot branching. Plant Cell Physiol. 2014;55(6):1096–1109. doi:10.1093/pcp/pcu045.
   PubMed Web of Science ®Google Scholar
• Guo T, Wang D, Fang J, Zhao J, Yuan S, Xiao L, Li X. Mutations in the rice OsCHR4 gene, encoding CHD3 family chromatin remodeler, induce narrow and rolled leaves with increased cuticular wax. Int J Mol Sci. 2019;20(10):2567. doi:10.3390/ijms20102567.
   Web of Science ®Google Scholar
• Wen X, Sun L, Chen Y, Xue P, Yang Q, Wang B, Yu N, Cao Y, Zhang Y, Gong K, et al. Rice dwarf and low tillering 10 (OsDLT10) regulates tiller number by monitoring auxin homeostasis. Plant Sci. 2020;297:110502. doi:10.1016/j.plantsci.2020.110502.
   PubMed Web of Science ®Google Scholar