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Articles

The phylogenetic affinities of Trachylepis sulcata nigra and the intraspecific evolution of coastal melanism in the western rock skink

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Pages 147-159 | Received 12 Feb 2010, Accepted 20 Jul 2010, Published online: 02 Dec 2015

References

  • BADENHORST, N.C., MOUTON, P. leF.N. & VAN WYK, J.H. 1992. Climates associated with melanistic cordylid populations (Reptilia: Sauria) in the south-western Cape, South Africa. Journal of the Herpetological Association of Africa 40: 70.
  • BLACKBURN, D.C. 2008. Biogeography and evolution of body size and life history of African frogs: phylogeny of squeakers (Arthroleptis) and long-fingered frogs (Cardioglossa) estimated from mitochondrial data. Molecular Phylogenetics and Evolution 49: 806–826.
  • BRANCH, W.R. 1994. Herpetofauna of the Sperrgebeit region of southern Namibia. Herpetological Natural History 2(1):1–11.
  • BRANCH, B. 1998. Field Guide to Snakes and other Reptiles of Southern Africa, 3rd edition. Ralph Curtis Books Publishing, Sanibel Island.
  • BRANDLEY, M.C., SCHMITZ, A. & REEDER, T.W. 2005. Partitioned Bayesian analyses, partition choice, and the phylogenetic relationships of scincid lizards. Systematic Biology 54: 373–390.
  • CASTOE, T.A., DOAN, T.M. & PARKINSON, C.L. 2004. Data partitions and complex models in Bayesian analysis: the phylogeny of gymnophthalmid lizards. Systematic Biology 53: 448–469.
  • CLUSELLA-TRULLAS, S., VAN WYK, J.H. & SPOTILA, J.R. 2009. Thermal benefits of melanism in cordylid lizards: a theoretical and field test. Ecology 90: 2297–2312.
  • CLUSELLA TRULLAS, S., VAN WYK, J. H. & SPOTILA, J.R. 2007. Thermal melanism in ectotherms. Journal of Thermal Biology 32: 235–245.
  • CORDES, I.G. & MOUTON, P. leF.N. 1995. The cryptic significance of melanism in cordylid lizards: a case study of Cordylus niger and C. polyzonus. Journal of the Herpetological Association of Africa 44:16–21.
  • COSTANDIUS, E., MOUTON, P. leF.N. & BOUCHER, C. 2006. Conservation status of the dwarf crag lizard, Pseudocordylus nebulosus, from the Hottentots Holland Mountains, South Africa. South African Journal of Wildlife Research 36: 123–132.
  • DANIELS, S.R., MOUTON, P. leF.N. & DU TOIT, D.A. 2004. Molecular data suggest that melanistic ectotherms at the south-western tip of Africa are the products of Miocene climatic events: evidence from cordylid lizards. Journal of Zoology 263: 373–383.
  • DRUMMOND, A., ASHTON, B., CHEUNG, M., HELED, J., KEARSE, M., MOIR, R., STONES-HAVAS, S., THIERER, T. & WILSON, A. 2009. Geneious v4.6. Available from http://www.geneious.com/
  • EDELSTAM, C. 1976. Functional and taxonomic aspects of melanism in reptiles. Zoologica Scripta 5: 186.
  • HUELSENBECK, J.P. & RONQUIST, F. 2001. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17: 754–755.
  • HUEY, R.B. & SLATKIN, M. 1976. Cost and benefits of lizard thermoregulation. Quarterly Review of Biology 51: 363–384.
  • KETTLEWELL, H.B.D. 1973. The Evolution of Melanism: a Study of Recurring Necessity; with Special Reference to Industrial Melanism in the Lepidoptera. Clarendon Press, Oxford.
  • LAURENT, R.L. 1964. Reptiles et amphibiens de l’Angola (troisième contribution). Publicações Culturais da Companhia de Diamantes de Angola 67: 1–165.
  • MACEY, J.R., LARSON, A., ANANJEVA, N.B. & PAPENFUSS, T.J. 1997. Evolutionary shifts in three major structural features of the mitochondrial genome among iguanian lizards. Journal of Molecular Evolution 44: 660–674.
  • McGUIRE, J.A., WITT, C.C., ALTSHULER, D.L. & REMSEN, J.V. 2007. Phylogenetic systematics and biogeography of hummingbirds: Bayesian and maximum likelihood analyses of partitioned data and selection of an appropriate partitioning strategy. Systematic Biology 56: 837–856.
  • MERTENS, R. 1955. Die Amphibien und Reptilien Südwestafrikas, aus den Ergebnissen einer im Jahre 1952 ausgeführten Reise. Abhandlungen der Senckenbergischen Naturforschenden Gesellshaft 490: 1–172.
  • MONNEY, J.C., LUISELLI, L. & CAPULA, M. 1995. Correlates of melanism in a population of adders (Vipera berus) from the Swiss Alps and comparisons with other alpine populations. Amphibia–Reptilia 16: 323–330.
  • MOUTON, P. leF.N. 1985. Comments on the Cordylus cordylus complex in the southwestern Cape. Journal of the Herpetological Association of Africa 31: 16–18.
  • MOUTON, P. leF.N. 1986. Lizard distribution as palaeoenvironmental indicators in the south-western Cape. Palaeoecology of Africa and the Surrounding Islands 17: 231–236.
  • MOUTON, P. leF.N., NIEUWOUDT, C.J., BADENHORST, N.C. & FLEMMING, A.F. 2002. Melanistic Cordylus polyzonus (Sauria : Cordylidae) populations in the Western Cape, South Africa: relics or ecotypes? Journal of Herpetology 36: 526–531.
  • MOUTON, P. leF.N. & OELOFSEN, B.W. 1988. A model explaining patterns of geographical character variation in Cordylus cordylus (Reptilia: Cordylidae) in the south-western Cape, South Africa. South African Journal of Zoology 23: 20–31.
  • NYLANDER, J.A.A., WILGENBUSCH, J.C., WARREN, D.L. & SWOFFORD, D.L. 2008. AWTY (are we there yet?): a system for graphical exploration of MCMC convergence in Bayesian phylogenetics. Bioinformatics 24: 581–583.
  • OLIVIER, J. 1995. Spatial distribution of fog in the Namib. Journal of Arid Environments 29: 129–138.
  • OLIVIER, J. 2002. Fog-water harvesting along the west coast of South Africa: a feasibility study. Water SA 28: 349–360.
  • OLIVIER, J. & STOCKTON, P.L. 1989. The influence of upwelling extent upon fog incidence at Lüderitz, southern Africa. International Journal of Climatology 9: 69–75.
  • ORTIZ, J. C. 1994. A new species of high Andean lizard of the genus Liolaemus (Sauria, Tropiduridae). Boletin de la Sociedad de Biologia de Concepcion 65: 191–195.
  • PEARSE, D.E. & POGSON, G.H. 2000. Parallel evolution of the melanic form of the California legless lizard, Anniella pulchra, inferred from mitochondrial DNA sequence variation. Evolution 54: 1041–1046.
  • PORTIK, D.M. 2009. Comparative phylogeography of two skink species in southern Africa. M.Sc. thesis, Department of Biology, Villanova University, Villanova.
  • POSADA, D. & BUCKLEY, T.R. 2004. Model selection and model averaging in phylogenetics: advantages of the AIC and Bayesian approaches over likelihood ratio tests. Systematic Biology 53: 793–808.
  • POSADA, D. & CRANDALL, K.A. 1998. MODELTEST: testing the model of DNA substitution. Bioinformatics 14: 817–818.
  • RASELIMANANA, A.P., NOONAN, B., KARANTH, K.P., GAUTHIER, J. & YODER, A.D. 2009. Phylogeny and evolution of Malagasy plated lizards. Molecular Phylogenetics and Evolution 50: 336–344.
  • RAXWORTHY, C.J., INGRAM, C.M., RABIBISOA, N. & PEARSON, R.G. 2007. Applications of ecological niche modeling for species delimitation: a review and empirical evaluation using day geckos (Phelsuma) from Madagascar. Systematic Biology 56: 907–923.
  • RONQUIST, F. & HUELSENBECK, J.P. 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572–1574.
  • ROSENBLUM, E.B., HOEKSTRA, H.E. & NACHMAN, M.W. 2004. Adaptive reptile color variation and the evolution of the Mc1r gene. Evolution 58: 1794–1808.
  • SHIMODAIRA, H. & HASEGAWA, M. 1999. Multiple comparisons of log-likelihoods with applications to phylogenetic inference. Molecular Biology and Evolution 16: 1114–1116.
  • SWOFFORD, D. L. 2003. PAUP*: phylogenetic analysis using parsimony (*and other methods), version 4. Sinauer Associates, Sunderland.
  • ZWICKL, D.J. 2006. Genetic algorithm approaches for the phylogenetic analysis of large biological sequence datasets under the maximum likelihood criterion. Ph.D. dissertation, University of Texas, Austin.
  • Responsible Editor: P. leF.N. Mouton

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