2,197
Views
47
CrossRef citations to date
0
Altmetric
Research papers

Instream physical habitat modelling types: an analysis as stream hydromorphological modelling tools for EU water resource managers

, &
Pages 93-107 | Received 20 May 2009, Accepted 21 Dec 2009, Published online: 29 Apr 2010

References

  • Adriaenssens , V. 2004 . Fuzzy rule-based models for decision support in ecosystem management . Science of the Total Environment , 319 ( 1–3 ) : 1 – 12 .
  • Adriaenssens , V. , De Baets , B. , Goethals , P. L.M. and De Pauw , N. 2004 . Fuzzy rule-based models for decision support in ecosystem management . Science of the Total Environment , 319 ( 1–3 ) : 1 – 12 .
  • Adriaenssens , V. , Goethals , P. L.M. and De Pauw , N. 2006 . Fuzzy knowledge-based models for prediction of Asellus and Gammarus in watercourses in Flanders (Belgium) . Ecological Modelling , 195 ( 1–2 ) : 3 – 10 .
  • Affifi , A. A. and Clark , V. 1996 . Computer-aided multivariate analysis , New York : Chapman and Hall .
  • Agresti , A. 1996 . An introduction to categorical data analysis , New York : John Wiley and Sons .
  • Ahmadi-Nedushan , B. 2006 . A review of statistical methods for the evaluation of aquatic habitat suitability for instream flow assessment . River Research and Applications , 22 ( 5 ) : 503 – 523 .
  • Ahmadi-Nedushan , B. 2008 . Instream flow determination using a multiple input fuzzy-based rule system: a case study . River Research and Applications , 24 ( 3 ) : 279 – 292 .
  • Annoni , P. , Saccardo , I. , Gentili , G. and Guzzi , L. 1997 . A mulivariate model to relate hydological, chemical and biologocial parameters to salmonid biomass in Italian rivers . Fisheries Management and Ecology , 4 ( 6 ) : 439 – 452 .
  • Bardonnet , A. , Poncin , P. and Roussel , J. M. 2006 . Brown trout fry move inshore at night: a choice of water depth or velocity? . Ecology of Freshwater Fish , 15 ( 3 ) : 309 – 314 .
  • Beecher , H. A. , Caldwell , B. A. and Demond , S. B. 2002 . Evaluation of depth and velocity preferences of juvenile coho salmon in Washington streams . North American Journal of Fisheries Management , 22 ( 3 ) : 785 – 795 .
  • Beecher , H. A. , Johnson , T. H. and Carleton , J. P. 1993 . Predicting microdistributions of steelhead (Oncorhynchus-mykiss) parr from depth and velocity preference criteria – test of an assumption of the instream flow incremental methodology . Canadian Journal of Fisheries and Aquatic Sciences , 50 ( 11 ) : 2380 – 2387 .
  • Bonabeau , E. 2002 . Agent-based modeling: methods and techniques for simulating human systems . Proceedings of the National Academy of Sciences of the United States of America , 99 ( Suppl. 3 ) : 7280 – 7287 .
  • Booker , D. J. , Dunbar , M. J. and Ibbotson , A. 2004 . Predicting juvenile salmonid drift-feeding habitat quality using a three-dimensional hydraulic-bioenergetic model . Ecological Modelling , 177 : 157 – 177 .
  • Bovee , K. D. 1998 . Stream habitat analysis using the instream flow incremental methodology , Fort Collins : US Geological Survey . Biological Resources Discipline Information and Technology Report USGS/BRD-1998-0004
  • Bovee , K. D. 1986 . Development and evaluation of habitat criteria for use in instream flow incremental methodology , Fort Collins : US Fish and Wildlife Service . Instream Flow Information Paper 21, FWS/OBS/86/07
  • Bovee , K. D. and Cochnauer , T. 1977 . Development and evaluation of weighted criteria, probability of use curves for instream flow assessment: fisheries , Fort Collins : US Fish and Wildlife Service . FWS/OBS-77/63
  • Bovee , K. D. and Milhous , R. T. 1978 . Hydraulic simulation in instream flow studies: theory and techniques , Fort Collins : US Fish and Wildlife Service . Instream Flow Information Paper 5, FWS/OBS/78/33
  • Brant , S. B. and Hartmann , K. J. 1993 . Innovative approaches with bioenergetics models: future applications to fish ecology and management . Transactions of American Fisheries Society , 122 : 731 – 735 .
  • Brey , T. , Jarreteichmann , A. and Borlich , O. 1996 . Artificial neural network versus multiple linear regression: Predicting P/B ratios from empirical data . Marine Ecology-Progress Series , 140 ( 1–3 ) : 251 – 256 .
  • Brosse , S. , Guegan , J. F. , Tourenq , J. N. and Lek , S. 1999a . The use of artificial neural networks to assess fish abundance and spatial occupancy in the littoral zone of a mesotrophic lake . Ecological Modelling , 120 ( 2–3 ) : 299 – 311 .
  • Brosse , S. , Lek , S. and Dauba , F. 1999b . Predicting fish distribution in a mesotrophic lake by hydroacoustic survey and artificial neural networks . Limnology and Oceanography , 44 ( 5 ) : 1293 – 1303 .
  • Bult , T. P. , Riley , S. C. , Haedrich , R. L. , Gibson , R. J. and Heggenes , J. 1999 . Density-dependent habitat selection by juvenile Atlantic salmon (Salmo salar) in experimental riverine habitats . Canadian Journal of Fisheries and Aquatic Sciences , 56 ( 7 ) : 1298 – 1306 .
  • Bunn , S. E. and Arthington , A. H. 2002 . Basic principles and ecological consequences of altered flow regimes for aquatic biodiversity . Environmental Management , 30 ( 4 ) : 492 – 507 .
  • Cantrall , C. J. , Robinson , A. T. and Avenetti , L. D. 2005 . Habitat selection by Apache trout in six east-central Arizona streams . Transactions of American Fisheries Society , 134 : 1382 – 1388 .
  • Castella , E. , Adalsteinsson , H. , Brittain , J. E. , Gislason , G. M. , Lehmann , A. , Lencioni , V. , Lods-Crozet , B. , Maiolini , B. , Milner , A. M. , Olafsson , J. S. , Saltveit , S. J. and Snook , D. L. 2001 . Macrobenthic invertebrate richness and composition along a latitudinal gradient of European glacier-fed streams . Freshwater Biology , 46 ( 12 ) : 1811 – 1831 .
  • Cavendish , M. G. and Duncan , M. I. 1986 . Use of the instream flow incremental methodology: a tool for negotiation . Environmental Impact Assessment Review , 6 : 347 – 363 .
  • Chen , Q. and Mynatt , A. E. 2003 . Integration of data mining techniques and heuristic knowledge in fuzzy logic modelling of eutrophication in Taihu Lake . Ecological Modelling , 162 : 55 – 67 .
  • Cobb , D. G. , Galloway , T. D. and Flannagan , J. F. 1992 . Effect of discharge and substrate stability on density and species composition of stream insects . Canadian Journal of Fisheries and Aquatic Sciences , 49 ( 9 ) : 1788 – 1795 .
  • Commission , E. 2000 . Directive 2000/60/EC. Establishing a framework for community action in the field of water policy , Luxembourg : European Commission . PE-CONS 3639/1/100 Rev 1
  • Cornelissen , A. M.G. 2001 . Assessment of the contribution of sustainability indicators to sustainable development: a novel approach using fuzzy set theory . Agricultural and Ecosystem Environment , 8 : 173 – 185 .
  • Dakou , E. , Goethals , P. L.M. , D'heygere , T. , Dedecker , A. P. , Gabriels , W. , De Pauw , N. and Lazaridou-Dimitriadou , M. 2006 . Development of artificial neural network models predicting macroinvertebrate taxa in the river Axios (Northern Greece) . Annales De Limnologie-International Journal of Limnology , 42 ( 4 ) : 241 – 250 .
  • Dedecker , A. P. , Goethals , P. L.M. , D'heygere , T. , Gevrey , M. , Lek , S. and De Pauw , N. 2005 . Application of artificial neural network models to analyse the relationships between Gammarus pulex L. (Crustacea, Amphipoda) and river characteristics . Environmental Monitoring and Assessment , 111 ( 1–3 ) : 223 – 241 .
  • Dedecker , A. P. , Goethals , P. L.M. , Gabriels , W. and Pauwn , D. 2001 . River management applications of ecosystem models predicitng aquatic macroinvertebrate communities based on artificial neural networks (ANNs) . Mededelingen Faculteit Landbouwkundige en Toegepaste Biolgische Wetenschappen , 66 ( 4 ) : 207 – 211 .
  • Dunbar , M. 2001 . Further validation of PHABSIM for the habitat requirements of salmonid fish , UK : Centre for Ecology and Hydrology . R&D Report W6-036
  • Dunbar , M. J. 1998 . Overseas approaches to setting river flow objectives , Wallingford : Environment Agency and NERC . R&D Technical Report W6-161
  • Edmondson , W. T. and Winberg , G. G. 1971 . A manual on methods for the assessment of secondary productivity in fresh waters , Oxford : Blackwell .
  • Egglishaw , H. J. and Shackley , P. E. 1982 . Influence of water depth on dispersion of juvenile salmonids, Salmo-salar L and Salmo-trutta-L, in a Scottish stream . Journal of Fish Biology , 21 ( 2 ) : 141 – 155 .
  • Elith , J. and Leathwick , J. 2007 . Predicting species distributions from museum and herbarium records using multiresponse models fitted with multivariate adaptive regression splines . Diversity and Distributions , 13 ( 3 ) : 265 – 275 .
  • Filipe , A. F. , Cowx , I. G. and Collares-Pereira , M. J. 2002 . Spatial modelling of freshwater fish in semi-arid river systems: a tool for conservation . River Research and Applications , 18 ( 2 ) : 123 – 136 .
  • Friedman , J. H. 1991 . Multivariate Adaptive Regression Splines (with discussion) . Annals of Statistics , 19 : 1 – 141 .
  • Garland , R. D. , Tiffan , K. F. , Rondorf , D. W. and Clark , L. O. 2002 . Comparison of subyearling fall chinook salmon's use of riprap, revetments and unaltered habitats in Lake Wallula of the Columbia River . North American Journal of Fisheries Management , 22 ( 4 ) : 1283 – 1289 .
  • Geist , D. R. , Jones , J. , Murray , C. J. and Dauble , D. D. 2000 . Suitability criteria analyzed at the spatial scale of redd clusters improved estimates of fall chinook salmon (Oncorhynchus tshawytscha) spawning habitat use in the Hanford Reach, Columbia River . Canadian Journal of Fisheries and Aquatic Sciences , 57 ( 8 ) : 1636 – 1646 .
  • Gibbins , C. N. and Acornley , R. M. 2000 . Salmonid habitat modelling studies and their contribution to the development of an ecologically acceptable release policy for Kielder Reservoir, North-East England . Regulated Rivers-Research and Management , 16 ( 3 ) : 203 – 224 .
  • Gordon , N. D. 2004 . Stream hydrology: an introduction for ecologists , 2 , Chichester : John Wiley and Sons .
  • Gore , J. A. and Nestler , J. M. 1988 . Instream flow studies in perspective . Regulated Rivers – Research and Management , 2 : 93 – 101 .
  • Grand , T. C. , Railsback , S. F. , Hayse , J. W. and Lagory , K. E. 2006 . A physical habitat model for predicting the effects of flow fluctuations in nursery habitats of the endangered Colorado pikeminnow (Ptychocheilus lucius) . River Research and Applications , 22 ( 10 ) : 1125 – 1142 .
  • Gray , B. R. 2005 . Selecting a distributional assumption for modelling relative densities of benthic macroinvertebrates . Ecological Modelling , 185 ( 1 ) : 1 – 12 .
  • Grimm , V. and Railsback , S. F. 2005 . Individual-based modelling and ecology , Princeton University .
  • Groshens , T. P. and Orth , D. J. 1994 . Transferability of habitat suitability criteria for smallmouth bass . Micropterus dolomieu. Rivers , 4 ( 3 ) : 194 – 212 .
  • Guay , J. C. 2000 . Development and validation of numerical habitat models for juveniles of Atlantic salmon (Salmo salar) . Canadian Journal of Fisheries and Aquatic Sciences , 57 ( 10 ) : 2065 – 2075 .
  • Guisan , A. , Edwards , T. C. and Hastie , T. 2002 . Generalised linear and generalized additive models in studies of species distributions: setting the scene . Ecological Modelling , 157 : 89 – 100 .
  • Guisan , A. and Zimmermann , N. E. 2000 . Predictive habitat distribution models in ecology . Ecological Modelling , 135 ( 2–3 ) : 147 – 186 .
  • Hansen , M. J. , Boisclair , D. , Brandt , S. B. , Hewett , S. W. , Kitchell , J. F. , Lucas , M. C. and Ney , J. J. 1993 . Applications of bioenergetics models to fish ecology and management - where do we go from here . Transactions of the American Fisheries Society , 122 ( 5 ) : 1019 – 1030 .
  • Harby , A. 2004 . Cost 626 report: state-of-the-art in data sampling, modelling analysis and applications of river habitat modelling , France : European Aquatic Modelling Network .
  • Hardy , T. B. 1998 . The future of habitat modeling and instream flow assessment techniques . Regulated Rivers – Research and Management , 14 ( 5 ) : 405 – 420 .
  • Harvey , B. C. and Railsback , S. F. 2007 . Estimating multi-factor cumulative watershed effects on fish populations with an individual-based model . Fisheries , 32 ( 6 ) : 292 – 298 .
  • Harvey , B. C. , White , J. L. and Nakamoto , R. J. 2002 . Habitat relationships and larval drift of native and nonindigenous fishes in neighboring tributaries of a coastal California river . Transactions of American Fisheries Society , 131 : 159 – 170 .
  • Hastie , T. , Tibshirani , R. J. and Friedman , J. H. 2001 . “ The elements of statistical learning: data mining, Inference and Prediction ” . Springer Series in Statistics New York : Springer-Verlag .
  • Hayes , J. W. and Jowett , I. G. 1994 . Microhabitat models of large drift-feeding brown trout in three New Zealand rivers . North American Journal of Fisheries Management , 14 : 710 – 725 .
  • Hayes , J. W. , Stark , J. D. and Shearer , K. A. 2000 . Development and test of a whole lifetime foraging and bioenergetics model for drift-feeding brown trout . Transactions of American Fisheries Society , 129 : 315 – 332 .
  • Heggenes , J. 1988 . Substrate preferences of brown trout fry (Salmo-trutta) in artificial stream channels . Canadian Journal of Fisheries and Aquatic Sciences , 45 ( 10 ) : 1801 – 1806 .
  • Heggenes , J. and Traaen , T. 1988 . Daylight responses to overhead cover in stream channels for fry of 4 salmonid species . Holarctic Ecology , 11 ( 3 ) : 194 – 201 .
  • Hill , J. and Grossman , G. D. 1993 . An energetic model of microhabitat use for rainbow-trout and rosyside dace . Ecology , 74 ( 3 ) : 685 – 698 .
  • Holm , C. F. , Armstrong , J. D. and Gilvear , D. J. 2001 . Investigating a major assumption of predictive instream habitat models: is water velocity preference of juvenile Atlantic salmon independent of discharge? . Journal of Fish Biology , 59 ( 6 ) : 1653 – 1666 .
  • Hughes , N. F. 1998 . A model of habitat selection by drift-feeding stream salmonids at different scales . Ecology , 79 ( 1 ) : 281 – 294 .
  • Hughes , N. F. 1992 . Selection of positions by drift-feeding salmonids in dominance hierarchies - model and test for arctic grayling (Thymallus-arcticus) in sub-arctic mountain streams, interior Alaska . Canadian Journal of Fisheries and Aquatic Sciences , 49 ( 10 ) : 1999 – 2008 .
  • Hughes , N. F. and Dill , L. M. 1990 . Position choice by drift-feeding salmonids - model and test for arctic grayling (Thymallus-arcticus) in sub-arctic mountain streams, interior Alaska . Canadian Journal of Fisheries and Aquatic Sciences , 47 ( 10 ) : 2039 – 2048 .
  • Humphries , P. , King , A. J. and Koehn , J. D. 1999 . Fish, flows and flood plains: links between freshwater fishes and their environment in the Murray–Darling River system, Australia . Environmental Biology of Fishes , 56 ( 1–2 ) : 129 – 151 .
  • Inoue , M. and Nakano , S. 2001 . Fish abundance and habitat relationships in forest and grassland streams, northern Hokkaido, Japan . Ecological Research , 16 ( 2 ) : 233 – 247 .
  • Ivlev , V. S. 1961 . Experimental ecology of the feeding fishes , New Haven : Yale University Press .
  • Jacobs , J. 1974 . Quantitative measurement of food selection: a modification of the forage ratio and Ivlev's electivity index . Oecologia , 14 : 413 – 417 .
  • Jacobsen , D. 2005 . Temporally variable macroinvertebrate-stone relationships in streams . Hydrobiologia , 544 ( 201–214 )
  • Jongman , R. H.G. , Peres-Neto , P. A. and Olden , J. D. 1995 . Data analysis in community and landscape ecology , Cambridge University Press .
  • Jorde , K. 2001 . “ Fuzzy based models for the evaluation of fish habitat quality and instream flow assessment ” . In Proceedings of the 3rd international symposium on environmental hydraulics Tempe, AZ
  • Jorgensen , S. E. and Bendoricchio , G. 2001 . Fundamentals of ecological modelling , 3 , Oxford : Cambridge University Press .
  • Jorgensen , S. E. 2008 . Overview of the model types available for development of ecological models . Ecological Modelling , 215 ( 1–3 ) : 3 – 9 .
  • Jowett , I. 1992 . Models of the abundance of large brown trout in New Zealand rivers . North American Journal of Fisheries Management , 12 : 417 – 432 .
  • Jowett , I. G. 1997 . Instream flow methods: A comparison of approaches . Regulated Rivers-Research & Management , 13 ( 2 ) : 115 – 127 .
  • Jowett , I. G. 2006 . RHYHABSIM river hydraulics and habitat simulation , Software manual
  • Jowett , I. G. and Davey , A. J.H. 2007 . A comparison of composite habitat suitability indices and generalized additive models of invertebrate abundance and fish presence–habitat availability . Transactions of the American Fisheries Society , 136 ( 2 ) : 428 – 444 .
  • Jowett , I. G. , Richardson , J. and Bonnett , M. L. 2005 . Relationship between flow regime and fish abundances in a gravel-bed river, New Zealand . Journal of Fish Biology , 66 ( 5 ) : 1419 – 1436 .
  • Kennedy , G. J.A. and Strange , C. D. 1982 . The distribution of salmonids in upland streams in relation to depth and gradient . Journal of Fish Biology , 20 ( 5 ) : 579 – 591 .
  • Kerle , F. , Zöllner , M. , Schneider , B. , Kappus and Baptist , M. J. Monitoring of long-term fish habitat changes in restored secondary floodplains channels of the River Rhine . Fourth International Ecohydraulics Symposium . Cape Town, South Africa. 3–8 March
  • Knapp , R. A. and Preisler , H. K. 1999 . Is it possible to predict habitat use by spawning salmonids? A test using California golden trout (Oncorhynchus mykiss aguabonita) . Canadian Journal of Fisheries and Aquatic Sciences , 56 ( 9 ) : 1576 – 1584 .
  • Kondolf , G. M. 2000 . Assessing salmonid spawning gravel quality . Transactions of the American Fisheries Society , 129 ( 1 ) : 262 – 281 .
  • Korman , J. , Perrin , C. J. and Lekstrum , T. 1994 . A guide for the selection of standard methods for quantifying sportfish habitat capability and suitability in streams and lakes of British Columbia , Vancouver, BC : BC Environment Fisheries Branch .
  • Labonne , J. , Allouche , S. and Gaudin , P. 2003 . Use of a generalised linear model to test habitat preferences: the example of Zingel asper, an endemic endangered percid of the River Rhone . Freshwater Biology , 48 ( 4 ) : 687 – 697 .
  • Lamouroux , N. and Capra , H. 2002 . Simple predictions of instream habitat model outputs for target fish populations . Freshwater Biology , 47 ( 8 ) : 1543 – 1556 .
  • Lamouroux , N. , Capra , H. and Pouilly , M. 1998 . Predicting habitat suitability for lotic fish: linking statistical hydraulic models with multivariate habitat use models . Regulated Rivers-Research and Management , 14 ( 1 ) : 1 – 11 .
  • Lamouroux , N. and Cattaneo , F. 2006 . Fish assemblages and stream hydraulics: consistent relations across spatial scales and regions . River Research and Applications , 22 ( 7 ) : 727 – 737 .
  • Lamouroux , N. and Jowett , I. G. 2005 . Generalized instream habitat models . Canadian Journal of Fisheries and Aquatic Sciences , 62 ( 1 ) : 7 – 14 .
  • Lasne , E. 2007 . Fish zonation and indicator species for the evaluation of the ecological status of rivers: example of the Loire Basin (France) . River Research and Applications , 23 ( 8 ) : 877 – 890 .
  • Leathwick , J. R. , Elith , J. and Hastie , T. 2006 . Comparative performance of generalized additive models and multivariate adaptive regression splines for statistical modelling of species distributions . Ecological Modelling , 199 ( 2 ) : 188 – 196 .
  • Leathwick , J. R. , Rowe , D. , Richardson , J. , Elith , J. and Hastie , T. 2005 . Using multivariate adaptive regression splines to predict the distributions of New Zealand's freshwater diadromous fish . Freshwater Biology , 50 ( 12 ) : 2034 – 2052 .
  • Leclerc , M. A. , St-Hilaire , A. and Bechara , J. A. 2003 . State-of-the-art and perspectives on habitat modelling . Canadian Water Resources Journal , 28 ( 2 ) : 153 – 172 .
  • Lek , S. , Belaud , A. , Baran , P. , Dimopoulos , I. and Delacoste , M. 1996a . Role of some environmental variables in trout abundance models using neural networks . Aquatic Living Resources , 9 ( 1 ) : 23 – 29 .
  • Lek , S. , Delacoste , M. , Baran , P. , Dimopoulos , I. , Lauga , J. and Aulagnier , S. 1996b . Application of neural networks to modelling nonlinear relationships in ecology . Ecological Modelling , 90 ( 1 ) : 39 – 52 .
  • Lek , S. and Guegan , J. F. 1999 . Artificial neural networks as a tool in ecological modelling, an introduction . Ecological Modelling , 120 ( 2–3 ) : 65 – 73 .
  • Lencioni , V. 2006 . Macroinvertebrate assemblages in glacial systems: a comparison of linear multivariate methods with artificial neural networks . Ecological Modelling , 203 ( 1–2 ) : 119 – 131 .
  • Logan , P. and Furse , M. 2002 . Preparing for the European Water Framework Directive – making the links between habitat and aquatic biota . Aquatic Conservation-Marine and Freshwater Ecosystems , 12 ( 4 ) : 425 – 437 .
  • Loia , V. , Sessa , S. , Staiano , A. and Tagliaferri , R. 2000 . Merging fuzzy logic, neural networks, and genetic computation in the design of a decision-support system . International Journal of Intelligent Systems , 15 ( 7 ) : 575 – 594 .
  • Mackinson , S. 2000 . An adaptive fuzzy expert system for predicting structure, dynamics and distribution of herring shoals . Ecological Modelling , 126 ( 2–3 ) : 155 – 178 .
  • Maddock , I. 1999 . The importance of physical habitat assessment for evaluating river health . Freshwater Biology , 41 ( 2 ) : 373 – 391 .
  • Mastrorillo , S. , Dauba , F. , Oberdorff , T. , Guégan , J. F. and Lek , S. 1997 . Prediciting local fish species in the Garonne River basin . C.R. Académie des Science , 321 : 423 – 428 .
  • Mathur , D. 1985 . A critique of the instream flow incremental methodology . Canadian Journal of Fisheries and Aquatic Sciences , 42 ( 4 ) : 825 – 831 .
  • May , R. J. , Maier , H. R. , Dandy , G. C. and Fernando , T. 2008 . Non-linear variable selection for artificial neural networks using partial mutual information . Environmental Modelling & Software , 23 ( 10–11 ) : 1312 – 1326 .
  • Meesters , E. H. , Bak , R. P.M. , Westmacott , S. , Ridgley , M. and Dollar , S. 1997 . A fuzzy logic model to predict coral reef development under nutrient and sediment stress . Conservation Biology , 12 ( 5 ) : 957 – 965 .
  • Moir , H. J. 2005 . PHABSIM modelling of Atlantic salmon spawning habitat in an upland stream: testing the influence of habitat suitability indices on model output . River Research and Applications , 21 ( 9 ) : 1021 – 1034 .
  • Mouton , A. M. 2008 . Optimisation of a fuzzy physical habitat model for spawning European grayling (Thymallus thymallus L.) in the Aare river (Thun, Switzerland) . Ecological Modelling. 215(1–3), 122–132
  • Munoz , J. and Fellicísmo , A. M. 2004 . Comparison of statistical methods used in predictive modelling . Journal of Vegetation Science , 15 : 285 – 292 .
  • Naiman , J. R. , Bunn , S. E , Nilsson , C. , Petts , G. E. , Pinay , G. and Thompson , L. C. 2002 . Legitimising fluvial ecosystems as users of water: An overview . Environmental Management , 30 ( 4 ) : 455 – 467 .
  • Narumalani , S. , Jensen , J. R. , Althausen , J. D. , Burkhalter , S. and Mackey , H. E. 1997 . Aquatic macrophyte modeling using GIS and logistic multiple regression . Photogrammetric Engineering and Remote Sensing , 63 ( 1 ) : 41 – 49 .
  • Neumann , R. M. and Wildman , T. L. 2002 . Relationships between trout habitat use and woody debris in two southern New England streams . Ecology of Freshwater Fish , 11 ( 4 ) : 240 – 250 .
  • Ney , J. J. 1993 . Bioenergetics modeling today - growing pains on the cutting edge . Transactions of the American Fisheries Society , 122 ( 5 ) : 736 – 748 .
  • Nykanen , M. , Huusko , A. and Maki-Petays , A. 2001 . Seasonal changes in the habitat use and movements of adult European grayling in a large subarctic river . Journal of Fish Biology , 58 ( 2 ) : 506 – 519 .
  • Olden , J. D. and Jackson , D. A. 2002 . Illuminating the ‘black box’: understanding variable contributions in artificial neural networks . Transactions of American Fisheries Society , 154 : 135 – 150 .
  • Olsen , M. 2009 . Groundwater abstraction impacts on physical habitat of brown trout (Salmo trutta) in a small Danish stream . Hydrology Research , 40 ( 4 ) : 394 – 405 .
  • Orth , D. J. and Maughen , O. E. 1982 . Evaluation of the incremental methodology for recommending instream flows for fishes . Transactions of American Fisheries Society , 111 : 413 – 445 .
  • Parasiewicz , P. and Dunbar , M. J. 2001 . Physical habitat modelling for fish - a developing approach . Large Rivers , 12 : 239 – 268 .
  • Park , Y. S. , Grenouillet , G. , Esperance , B. and Lek , S. 2006 . Stream fish assemblages and basin land cover in a river network . Science of the Total Environment , 365 ( 1–3 ) : 140 – 153 .
  • Payne and Associates . 2000 . RHABSIM . Fisheries Biology. Consulting and Software Publishing, Arcata, CA. Available from: http://trpafishbiologists.com/rindex.html
  • Poff , N. L. 1997 . The natural flow regime . Bioscience , 47 ( 11 ) : 769 – 784 .
  • Pollard , P. and Huxham , M. 1998 . The European Water Framework Directive: a new era in the management of aquatic ecosystem health? . Aquatic Conservation-Marine and Freshwater Ecosystems , 8 ( 6 ) : 773 – 792 .
  • Pothoven , S. A. , Fahnenstiel , G. L. and Vanderploeg , H. A. 2001 . Population dynamics of Bythotrephes cederstroemii in south-east Lake Michigan, 1995–1998 . Freshwater Biology , 46 ( 11 ) : 1491 – 1501 .
  • Quinn , G. P. and Keough , M. J. 2006 . Experimental design and data analysis for biologists , Cambridge University Press .
  • Railsback , S. F. , Stauffer , H. B. and Harvey , B. C. 2003 . What can habitat preference models tell us? Tests using a virtual trout population . Ecological Applications , 13 ( 6 ) : 1580 – 1594 .
  • Railsback , S. F. and Harvey , B. C. 2002 . Analysis of habitat-selection rules using an individual-based model . Ecology , 83 ( 7 ) : 1817 – 1830 .
  • Raleigh , R. F. , Zuckerman , L. D. and Nelson , P. C. 1986 . Habitat suitability models and instream flow suitability curves: Brown Trout , Washington, DC : US Department of the Interior, Fish and Wildlife Service . Biological Report 82(10.124)
  • Rand , P. S. 1995 . Effect of lake-wide planktivory by the pelagic prey fish community in lakes Michigan and Ontario . Canadian Journal of Fisheries and Aquatic Sciences , 52 ( 7 ) : 1546 – 1563 .
  • Rosenfeld , J. 2003 . Assessing the habitat requirements of stream fishes: an overview and evaluation of different approaches . Transactions of American Fisheries Society , 57 ( 4 ) : 766 – 774 .
  • Schneider , M. and Peter , A. Okostrom: field study and use of the simulation model CASIMIR for determination of fish habitat in River Brenno . Proceedings of the 3rd international symposium on ecohydraulics . Salt Lake City, Utah.
  • Schweizer , S. 2007 . Predicting joint frequency distributions of depth and velocity for instream habitat assessment . River Research and Applications , 23 ( 3 ) : 287 – 302 .
  • Silvert , W. 1997 . Ecological impact classification with fuzzy sets . Ecological Modelling , 96 ( 1–3 ) : 1 – 10 .
  • Silvert , W. 2000 . Fuzzy indices of environmental conditions . Ecological Modelling , 130 ( 1–3 ) : 111 – 119 .
  • Stalnaker , C. B. 1995 . The instream flow incremental methodology: a primer for IFIM , Technical Report Series Fort Collins : National Biological Service, Biological Report 29 .
  • Stewardson , M. 2005 . Hydraulic geometry of stream reaches . Journal of Hydrology , 306 ( 1–4 ) : 97 – 111 .
  • Stewardson , M. J. and McMahon , T. A. 2002 . A stochastic model of hydraulic variations within stream channels . Water Resources Research , 38 ( 1 ) : 14
  • Stewart , D. J. and Ibarra , M. 1991 . Predation and production by salmonine fishes in lake-Michigan, 1978–88 . Canadian Journal of Fisheries and Aquatic Sciences , 48 ( 5 ) : 909 – 922 .
  • Stillman , R. A. 2008 . MORPH – an individual-based model to predict the effect of environmental change on foraging animal populations . Ecological Modelling , 216 ( 3–4 ) : 265 – 276 .
  • Sullivan , S. M.P. , Watzin , M. C. and Hession , W. C. 2006 . Influence of stream geomorphic condition on fish communities in Vermont, USA . Freshwater Biology , 51 ( 10 ) : 1811 – 1826 .
  • Sullivan , S. M.P. , Watzin , M. C. and Hession , W. C. 2004 . Understanding stream geomorphic state in relation to ecological integrity: evidence using habitat assessments and macroinvertebrates . Environmental Management , 34 ( 5 ) : 669 – 683 .
  • Suren , A. M. and Jowett , I. G. 2006 . Effects of floods versus low flows on invertebrates in a New Zealand gravel-bed river . Freshwater Biology , 51 ( 12 ) : 2207 – 2227 .
  • Tharme , R. E. 2003 . A global perspective on environmental flow assessment: emerging trends in the development and application of environmental flow methodologies for rivers . River Research and Applications , 19 ( 5–6 ) : 397 – 441 .
  • Thomas , J. A. and Bovee , K. D. 1993 . Application and testing of a procedure to evaluate transferability of habitat suitability criteria . Regulated Rivers – Research and Management , 8 ( 3 ) : 285 – 294 .
  • Thorn , P. and Conallin , J. C. 2006 . RHYHABSIM as a stream management tool: case study in the River Kornerup Catchment, Denmark . The Journal of Transdisciplinary Environmental Studies , 5 ( 1–2 ) : 1 – 17 .
  • Townend , J. 2002 . Practical statistics for environmental and biological scientists , Chichester, UK : John Wiley and Sons, Ltd .
  • Udevitz , M. S. , Bloomfield , P. and Apperson , C. S. 1987 . Prediction of the occurrence of four species of mosquito larvae with logistic regression on water chemistry variables . Environmental Entomology , 16 : 281 – 285 .
  • Vadas , R. L. and Orth , D. J. 2001 . Formulation of habitat suitability models for stream fish guilds: do the standard methods work? . Transactions of the American Fisheries Society , 130 ( 2 ) : 217 – 235 .
  • Van Broekhoven , E. , Adriaenssens , V. and De Baets , B. 2007 . Interpretability-preserving genetic optimization of linguistic terms in fuzzy models for fuzzy ordered classification: An ecological case study . International Journal of Approximate Reasoning , 44 ( 1 ) : 65 – 90 .
  • Van Broekhoven , E. , Adriaenssens , V. , De Baets , B. and Verdonschot , P. F.M. 2006 . Fuzzy rule-based macroinvertebrate habitat suitability models for running waters . Ecological Modelling , 198 ( 1–2 ) : 71 – 84 .
  • Van Den Berg , M. S. , Joosse , W. and Coops , H. 2003 . A statistical model predicting the occurrence and dynamics of submerged macrophytes in shallow lakes in the Netherlands . Hydrobiologia , 506 ( 1–3 ) : 611 – 623 .
  • Van Winkle , W. , Jager , H. I. , Railsback , S. F. , Holcomb , B. D. , Studley , T. K. and Baldrige , J. E. 1998 . Individual-based model of sympatric populations of brown and rainbow trout for instream flow assessment: model description and calibration . Ecological Modelling , 110 ( 2 ) : 175 – 207 .
  • Vehanen , T. , Bjerke , P. L. , Heggenes , J. , Huusko , A. and Maki-Petays , A. 2000 . Effect of fluctuating flow and temperature on cover type selection and behaviour by juvenile brown trout in artificial flumes . Journal of Fish Biology , 56 ( 4 ) : 923 – 937 .
  • Vismara , R. 2001 . Habitat suitability curves for brown trout (Salmo trutta fario L.) in the river Adda, Northern Italy: comparing univariate and multivariate approaches . Regulated Rivers – Research and Management , 17 ( 1 ) : 37 – 50 .
  • Wagner , T. and Falter , C. M. 2002 . Response of an aquatic macrophyte community to fluctuating water levels in an oligotrophic lake . Lake Reserve Management , 18 ( 1 ) : 52 – 65 .
  • Wallin , M. , Wiederholm , D. and Johnson , R. K. 2003 . Guidance on establishing reference conditions and ecological status class boundaries for inland surface waters . CIS Working Group 2.3 – REFCOND, 7th version

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.