Analysis of long non-coding RNA expression in hemophilia A patients

References

• Elmahmoudi H, Khodjet-el-khil H, Wigren E, et al. First report of molecular diagnosis of Tunisian hemophiliacs A: identification of 8 novel causative mutations. Diagn Pathol. 2012;7:93. doi: 10.1186/1746-1596-7-93
   PubMed Web of Science ®Google Scholar
• Pezeshkpoor B, Theophilus BD, Guilliatt AM, et al. Novel characterization of a breakpoint in F8: an individualized approach to gene analysis when PCR and MLPA results contradict. Haemophilia. 2015;21:392–397. doi: 10.1111/hae.12606
   PubMed Web of Science ®Google Scholar
• Trampuš Bakija A, Debeljak M, Preložnik Zupan I, et al. Specific and global coagulation tests in patients with mild haemophilia A with a double mutation (Glu113Asp, Arg593Cys). Blood Transfus. 2015;13:622–630.
   PubMed Web of Science ®Google Scholar
• Rydz N, Leggo J, Tinlin S, et al. The Canadian “national program for hemophilia mutation testing” database: A ten-year review. Am J Hematol. 2013;88:1030–1034. doi: 10.1002/ajh.23557
   PubMed Web of Science ®Google Scholar
• Antonarakis SE. Molecular genetics of coagulation factor VIII gene and hemophilia A. Thromb Haemost. 1995;74:322–328.
   PubMed Web of Science ®Google Scholar
• Chen X, Yan CC, Zhang X, et al. Long non-coding RNAs and complex diseases: from experimental results to computational models. Brief Bioinform. 2017;18:558–576.
   PubMed Web of Science ®Google Scholar
• Chen X, Yan CC, Luo C, et al. Constructing lncRNA functional similarity network based on lncRNA–disease associations and disease semantic similarity. Sci Rep. 2015;5:11338. doi: 10.1038/srep11338
   PubMed Web of Science ®Google Scholar
• Chen D, Sun Q, Cheng X, et al. Genome-wide analysis of long noncoding RNA (lncRNA) expression in colorectal cancer tissues from patients with liver metastasis. Cancer Med. 2016;5:1629–1639. doi: 10.1002/cam4.738
   PubMed Web of Science ®Google Scholar
• Dong R, Jia D, Xue P, et al. Genome-wide analysis of long noncoding RNA (lncRNA) expression in hepatoblastoma tissues. PLoS One. 2014;9:e85599. doi: 10.1371/journal.pone.0085599
   PubMed Web of Science ®Google Scholar
• Zhu H, Wang Q, Yao Y, et al. Microarray analysis of long non-coding RNA expression profiles in human gastric cells and tissues with Helicobacter pylori Infection. BMC Med Genomics. 2015;8:84. doi: 10.1186/s12920-015-0159-0
   PubMed Web of Science ®Google Scholar
• Ding L, Wang M, Sun D, et al. TPGLDA: Novel prediction of associations between lncRNAs and diseases via lncRNA-disease-gene tripartite graph. Sci Rep. 2018;8:1065. doi: 10.1038/s41598-018-19357-3
   PubMed Web of Science ®Google Scholar
• Gu C, Liao B, Li X, et al. Global network random walk for predicting potential human lncRNA-disease associations. Sci Rep. 2017;7:12442. doi: 10.1038/s41598-017-12763-z
   PubMed Web of Science ®Google Scholar
• Chen X, Yan GY. Novel human lncRNA-disease association inference based on lncRNA expression profiles. Bioinformatics. 2013;29:2617–2624. doi: 10.1093/bioinformatics/btt426
   PubMed Web of Science ®Google Scholar
• Fang Y, Fullwood MJ. Roles, functions and mechanisms of long non-coding RNAs in cancer. Genomics Proteomics Bioinformatics. 2016;14:42–54. doi: 10.1016/j.gpb.2015.09.006
   PubMed Web of Science ®Google Scholar
• Ma J, Liu F, Du X, et al. Changes in lncRNAs and related genes in β-thalassemia minor and β-thalassemia major. Front Med. 2017;11:74–86. doi: 10.1007/s11684-017-0503-1
   PubMed Web of Science ®Google Scholar
• Shi X, Sun M, Liu H, et al. Long non-coding RNAs: a new frontier in the study of human diseases. Cancer Lett. 2013;339:159–166. doi: 10.1016/j.canlet.2013.06.013
   PubMed Web of Science ®Google Scholar
• Maass PG, Luft FC, Bahring S. Long non-coding RNA in health and disease. J Mol Med. 2014;92:337–346. doi: 10.1007/s00109-014-1131-8
   PubMed Web of Science ®Google Scholar
• Alvarez ML, Di Stefano JK. Functional characterization of the plasmacytoma variant translocation 1 gene (PVT1) in diabetic nephropathy. PLoS One. 2011;6:e18671. doi: 10.1371/journal.pone.0018671
   PubMed Web of Science ®Google Scholar
• Calin GA, Liu CG, Ferracin M, et al. Ultraconserved regions encoding ncRNAs are altered in human leukemias and carcinomas. Cancer Cell. 2007;12:215–229. doi: 10.1016/j.ccr.2007.07.027
   PubMed Web of Science ®Google Scholar
• Zhang Q, Chen CY, Yedavalli VS, et al. NEAT1 long noncoding RNA and paraspeckle bodies modulate HIV-1 posttranscriptional expression. M Bio. 2013;4:e00596–12.
   Google Scholar
• Yan Y, Zhang D, Zhou P, et al. HDOCK: a web server for protein-protein and protein-DNA/RNA docking based on a hybrid strategy. Nucleic Acids Res. 2017;45:W365–W373. doi: 10.1093/nar/gkx407
   PubMed Web of Science ®Google Scholar
• Tuszynska I, Magnus M, Jonak K, et al. NPDock: a web server for protein-nucleic acid docking. Nucleic Acids Res. 2015;43:425–430. doi: 10.1093/nar/gkv493
   Web of Science ®Google Scholar
• Zhao Y, Li H, Fang S, et al. NONCODE 2016: an informative and valuable data source of long non-coding RNAs. Nucleic Acids Res. 2016;44:D203–D208. doi: 10.1093/nar/gkv1252
   PubMed Web of Science ®Google Scholar
• Zhao Y, Huang Y, Gong Z, et al. Automated and fast building of three-dimensional RNA structures. Sci Rep. 2012;2:734. doi: 10.1038/srep00734
   PubMed Web of Science ®Google Scholar
• Yi Y, Zhao Y, Huang Y, et al. A brief review of RNA-protein interaction database resources. Noncoding RNA. 2017;3:E6.
   PubMedGoogle Scholar
• Muppirala UK, Honavar VG, Dobbs D. Predicting RNA-protein interactions using only sequence information. BMC Bioinformatics. 2011;12:489. doi: 10.1186/1471-2105-12-489
   PubMed Web of Science ®Google Scholar
• Pfaffl MW. A new mathematical model for relative quantification in real time RT-PCR. Nucleic Acids Res. 2001;29:e45. doi: 10.1093/nar/29.9.e45
   PubMed Web of Science ®Google Scholar
• Shen BW, Spiegel PC, Chang CH, et al. The tertiary structure and domain organization of coagulation factor VIII. Blood. 2008;111:1240–1247. doi: 10.1182/blood-2007-08-109918
   PubMed Web of Science ®Google Scholar
• Huang X, Hao C, Bao H, et al. Aberrant expression of long noncoding RNAs in cumulus cells isolated from PCOS patients. J Assist Reprod Genet. 2016;33:111–121. doi: 10.1007/s10815-015-0630-z
   PubMed Web of Science ®Google Scholar
• Chen LL. Linking long noncoding RNA localization and function. Trends Biochem Sci. 2016;41:761–772. doi: 10.1016/j.tibs.2016.07.003
   PubMed Web of Science ®Google Scholar
• Dinger ME, Amaral PP, Mercer TR, et al. Pervasive transcription of the eukaryotic genome: functional indices and conceptual implications. Brief Funct Genomic Proteomic. 2009;8:407–423. doi: 10.1093/bfgp/elp038
   PubMedGoogle Scholar
• Mercer TR, Dinger ME, Mattick JS. Long non-coding RNAs: insights into functions. Nat Rev Genet. 2009;10:155–159. doi: 10.1038/nrg2521
   PubMed Web of Science ®Google Scholar
• Sun J, Shi H, Wang Z, et al. Inferring novel lncRNA-disease associations based on a random walk model of a lncRNA functional similarity network. Mol Biosyst. 2014;10:2074–2081. doi: 10.1039/C3MB70608G
   PubMedGoogle Scholar
• Hernández-Santoyo A, Tenorio-Barajas AY, Altuzar V. Protein-protein and protein-ligand docking. Intech Open. 2013;3:63–81.
   Google Scholar