Gut bacterial diversity on the basis of feeding behaviour in different species of thrips (Thysanoptera)

References

• Dillon RJ, Dillon VM. The gut bacteria of insects: nonpathogenic interactions. Ann Rev Entomol. 2004;49:71–92.
   PubMed Web of Science ®Google Scholar
• Engel P, Moran NA. The gut microbiota of insects – diversity in structure and function. FEMS Microbiol Rev. 2013;37:699–735.
   PubMed Web of Science ®Google Scholar
• Douglas AE. The ecology of symbiotic micro-organisms. Adv Ecol Res. 1995;26:69–103.
   Google Scholar
• Douglas AE. Multiorganismal insects: diversity and function of resident microorganisms. Ann Rev Entomol. 2015;60:17–34.
   PubMed Web of Science ®Google Scholar
• Tang X, Freitak D, Vogel H, et al. Complexity and variability of gut commensal microbiota in polyphagous lepidopteran larvae. PloS one. 2012;7:e36978.
   PubMed Web of Science ®Google Scholar
• Paniagua Voirol LR, Frago E, Kaltenpoth M, et al. Bacterial symbionts in Lepidoptera: their diversity, transmission, and impact on the host. Front Microbiol. 2018;9:556.
   PubMed Web of Science ®Google Scholar
• Mason CJ, St Clair A, Peiffer M, et al. Diet influences proliferation and stability of gut bacterial populations in herbivorous lepidopteran larvae. PloS one. 2020;15:e0229848.
   PubMed Web of Science ®Google Scholar
• Leite-Mondin M, DiLegge MJ, Manter DK, et al. The gut microbiota composition of Trichoplusia ni is altered by diet and may influence its polyphagous behavior. Sci Rep. 2021;11:5786. doi:10.1038/s41598-021-85057-0.
   PubMed Web of Science ®Google Scholar
• Wang Y, Su L, Huang S, et al. Diversity and resilience of the wood-feeding higher termite Mironasutitermes shangchengensis gut microbiota in response to temporal and diet variations. Ecol Evol. 2016;6:8235–8242.
   PubMed Web of Science ®Google Scholar
• Su L, Yang L, Huang S, et al. Variation in the gut microbiota of termites (Tsaitermes ampliceps) against different diets. Appl Biochem Biotechnol. 2017;181:32–47.
   PubMed Web of Science ®Google Scholar
• Calusinska M, Marynowska M, Bertucci M, et al. Integrative omics analysis of the termite gut system adaptation to Miscanthus diet identifies lignocellulose degradation enzymes. Commun Biol. 2020;3:275. doi:10.1038/s42003-020-1004-3.
   PubMed Web of Science ®Google Scholar
• Zheng X, Zhu Q, Zhou Z, et al. Gut bacterial communities across 12 Ensifera (Orthoptera) at different feeding habits and its prediction for the insect with contrasting feeding habits. Plos one. 2021;16:e0250675. doi:10.1371/journal.pone.0250675.
   PubMed Web of Science ®Google Scholar
• Ng SH, Stat M, Bunce M, et al. The influence of diet and environment on the gut microbial community of field crickets. Ecol Evol. 2018;8:4704–4720.
   PubMed Web of Science ®Google Scholar
• Tinker KA, Ottesen EA. Differences in gut microbiome composition between sympatric wild and allopatric laboratory populations of omnivorous cockroaches. Front Microbiol. 2021;12:703785. doi:10.3389/fmicb.2021.703785.
   PubMed Web of Science ®Google Scholar
• ThripsWiki. ThripsWiki – providing information on the world’s thrips. [cited 2021 Sept 31]. Available from: https://thrips.info/wiki/.
   Google Scholar
• Tyagi K, Kumar V. Thrips (Insecta: Thysanoptera) of India-an updated checklist. Halteres. 2016;7:64–98.
   Google Scholar
• Riley DG, Joseph SV, Srinivasan R, et al. Thrips vectors of tospoviruses. J Int Pest Manage. 2011;1:1–10. doi:10.1603/IPM10020.
   Google Scholar
• De Vries EJ, Breeuwer JAJ, Jacobs G, et al. The association of western flower thrips, Frankliniella occidentalis, with a near Erwinia species gut bacteria: transient or permanent? J Invertebr Pathol. 2001a;77:120–128. doi:10.1006/jipa.2001.5009.
   PubMed Web of Science ®Google Scholar
• De Vries EJ, Jacobs G, Breeuwer JAJ. Growth and transmission of gut bacteria in the western flower thrips, Frankliniella occidentalis. J Invertebr Pathol. 2001b;77:129–137.
   PubMed Web of Science ®Google Scholar
• De Vries EJ, Jacobs G, Sabelis MW, et al. Diet-dependent effects of gut bacteria on their insect host: the symbiosis of Erwinia sp. and western flower thrips. Proc R Soc B-Biol Sci. 2004;271:2171–2178.
   PubMed Web of Science ®Google Scholar
• De Vries EJ, Van De Wetering F, Van Der Hoek MM, et al. Symbiotic bacteria (Erwinia sp.) in the gut of Frankliniella occidentalis (Thysanoptera: Thripidae) do not affect its ability to transmit tospovirus. European J Entomol. 2012;109:261–266.
   Web of Science ®Google Scholar
• Dickey AM, Trease AJ, Jara-Cavieres A, et al. Estimating bacterial diversity in Scirtothrips dorsalis (Thysanoptera: Thripidae) via next generation sequencing. Florida Entomol. 2014;97:362–366.
   PubMed Web of Science ®Google Scholar
• Kaczmarczyk A, Kucharczyk H, Kucharczyk M, et al. First insight into microbiome profile of fungivorous thrips Hoplothrips carpathicus (Insecta: Thysanoptera) at different developmental stages: molecular evidence of Wolbachia endosymbiosis. Sci Rep. 2018;8:1–13.
   PubMed Web of Science ®Google Scholar
• Gawande SJ, Anandhan S, Ingle A, et al. Microbiome profiling of the onion thrips, Thrips tabaci Lindeman (Thysanoptera: Thripidae). PloS one. 2019;14:e0223281.
   PubMed Web of Science ®Google Scholar
• Ananthakrishnan TN, Jagadish A. Gall-inhabiting Liothrips Uzel from India. Orient Insects. 1969;2:205–217.
   Google Scholar
• Ananthakrishnan TN. Studies on some Indian species of the genus Elaphrothrips Buffa (Megathripinae: Tubulifera: Thysanoptera). Pac Insects. 1973;15:271–284.
   Web of Science ®Google Scholar
• Ananthakrishnan TN, Sen S. (1980). Taxonomy of Indian Thysanoptera. Handbook Series No. 1. Zoological Survey of India, Government of India.
   Google Scholar
• Mound LA, Tree DJ. Identification and host-plant associations of Australian Sericothripinae (Thysanoptera: Thripidae). Zootaxa. 2009;1983:1–22.
   Google Scholar
• Mound LA. Grass-dependent Thysanoptera of the family Thripidae from Australia. Zootaxa. 2011;3064:1–40.
   Google Scholar
• Ng YF, Mound LA. The Stenchaetothrips species (Thysanoptera, Thripidae) of Malaysia, with one new species. Zootaxa. 2012;3357:56–62.
   Google Scholar
• Okajima S. The insects of Japan. Volume 2. The suborder Tubulifera (Thysanoptera). Fukuoka: Touka Shobo Co. Ltd; 2006, pp. 1–720.
   Google Scholar
• Palmer JM, Mound LA. Nine genera of fungus-feeding Phlaeothripidae (Thysanoptera) from the Oriental Region. Bull Brit Mus (Nat Hist) Entomol. 1978;37:153–215.
   Google Scholar
• Wilson TH. A monograph of the subfamily Panchaetothripinae (Thysanoptera: Thripidae). Mem Am Entomol Inst. 1975;23:1–354.
   Google Scholar
• Bolyen E, Rideout JR, Dillon MR, et al. Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2. Nat Biotechnol. 2019;37:852–857.
   PubMed Web of Science ®Google Scholar
• Callahan BJ, McMurdie PJ, Rosen MJ, et al. DADA2: high-resolution sample inference from Illumina amplicon data. Nat Methods. 2016;13:581–583.
   PubMed Web of Science ®Google Scholar
• Dhariwal A, Chong J, Habib S, et al. Microbiomeanalyst—a web-based tool for comprehensive statistical, visual and meta-analysis of microbiome data. Nucleic Acids Res. 2017;45:180–188. doi:10.1093/nar/gkx295.
   PubMed Web of Science ®Google Scholar
• Chong J, Liu P, Zhou G, et al. Using MicrobiomeAnalyst for comprehensive statistical, functional, and meta-analysis of microbiome data. Nat Protoc. 2020. doi:10.1038/s41596-019-0264-1.
   PubMed Web of Science ®Google Scholar
• Bardou P, Mariette J, Escudié F, et al. Jvenn: an interactive Venn diagram viewer. BMC Bioinf. 2014;15:293–300.
   PubMed Web of Science ®Google Scholar
• Langille MGI. Exploring linkages between taxonomic and functional profiles of the human microbiome. mSystems. 2018;3:e00163–17. doi:10.1128/mSystems.00163-17.
   PubMed Web of Science ®Google Scholar
• Kanehisa M. Toward understanding the origin and evolution of cellular organisms. Protein Sci. 2019;28:1947–1951. doi:10.1002/pro.3715.
   PubMed Web of Science ®Google Scholar
• Kanehisa M, Goto S. KEGG: Kyoto encyclopedia of genes and genomes. Nucleic Acids Res. 2000;28:27–30.
   PubMed Web of Science ®Google Scholar
• Kanehisa M, Sato Y, Furumichi M, et al. New approach for understanding genome variations in KEGG. Nucleic Acids Res. 2019;47:D590–D595. doi:10.1093/nar/gky962.
   PubMed Web of Science ®Google Scholar
• Parks DH, Tyson GW, Hugenholtz P, et al. STAMP: statistical analysis of taxonomic and functional profiles. Bioinformatics. 2014;30:3123–3124. doi:10.1093/bioinformatics/btu494.
   PubMed Web of Science ®Google Scholar
• Vaz MGMV, Almeida AVM, Castro NV, et al. Carbon and nitrogen metabolism in cyanobacteria: basic traits, regulation and biotechnological application. In: Handbook of algal science, technology and medicine; 2020. p. 245–254. doi:10.1016/b978-0-12-818305-2.00015-2.
   Google Scholar
• Karamipour N, Fathipour Y, Mehrabadi M. Gammaproteobacteria as essential primary symbionts in the striped shield bug, Graphosoma lineatum (Hemiptera: Pentatomidae). Sci Rep. 2016;6:1–13. doi:10.1038/srep33168.
   PubMed Web of Science ®Google Scholar
• Kashkouli M, Fathipour Y, Mehrabadi M. Heritable Gammaproteobacterial symbiont improves the fitness of Brachynema germari Kolenati (Hemiptera: Pentatomidae). Environ Entomol. 2019;48:1079–1087.
   PubMed Web of Science ®Google Scholar
• Zhang J, Zhang Y, Xue Y, et al. Research advances on a secondary endosymbiont Rickettsia in insect. J Environ Entomol. 2017;39:431–443.
   Google Scholar
• Lenaerts M, Goelen T, Paulussen C, et al. Nectar bacteria affect life history of a generalist aphid parasitoid by altering nectar chemistry. Funct Ecol. 2017;31:2061–2069.
   Web of Science ®Google Scholar
• Ranjith MT, Harish ER, Girija D, et al. Bacterial communities associated with the gut of tomato fruit borer, Helicoverpa armigera (Hübner)(Lepidoptera: Noctuidae) based on Illumina next-generation sequencing. J Asia-Pacific Entomol. 2016;19:333–340.
   Web of Science ®Google Scholar
• Delalibera I, Handelsman J, Raffa KF. Contrasts in cellulolytic activities of gut microorganisms between the wood borer, Saperda vestita (Coleoptera: Cerambycidae), and the bark beetles, Ips pini and Dendroctonus frontalis (Coleoptera: Curculionidae). Env Entomol. 2005;34:541–547.
   Web of Science ®Google Scholar
• Vasanthakumar A, Handelsman J, Schloss PD, et al. Gut microbiota of an invasive subcortical beetle, Agrilus planipennis Fairmaire, across various life stages. Env Entomol. 2008;37:1344–1353.
   PubMed Web of Science ®Google Scholar
• Morales-Jiménez J, Zúñiga G, Ramírez-Saad HC, et al. Gut-associated bacteria throughout the life cycle of the Bark Beetle Dendroctonus rhizophagus Thomas and Bright (Curculionidae: Scolytinae) and their cellulolytic activities. Microb Ecol. 2012;64:268–278. doi:10.1007/s00248-011-9999-0.
   PubMed Web of Science ®Google Scholar
• Vilanova C, Baixeras J, Latorre A, et al. The generalist inside the specialist: gut bacterial communities of two insect species feeding on toxic plants are dominated by Enterococcus sp. Front Microbiol. 2016;7:1005.
   PubMed Web of Science ®Google Scholar
• Ma Q, Cui Y, Chu X, et al. Gut bacterial communities of Lymantria xylina and their associations with host development and diet. Microorganisms. 2021;9:1860. doi:10.3390/microorganisms9091860.
   PubMed Web of Science ®Google Scholar
• Michell C, Nyman T. Microbiomes of willow-galling sawflies: effects of host plant, gall type, and phylogeny on community structure and function. Genome. 2021: 64:1–12.
   Web of Science ®Google Scholar
• Pinto-Tomas AA, Sittenfeld A, Uribe-Lorio L, et al. Comparison of midgut bacterial diversity in tropical caterpillars (Lepidoptera: Saturniidae) fed on different diets. Environ Entomol. 2011;40:1111–1122.
   PubMed Web of Science ®Google Scholar
• Zug R, Hammerstein P. Still a host of hosts for Wolbachia: analysis of recent data suggests that 40% of terrestrial arthropod species are infected. PloS one. 2012;7:e38544.
   PubMed Web of Science ®Google Scholar
• Zug R, Hammerstein P. Bad guys turned nice? A critical assessment of Wolbachia mutualisms in arthropod hosts. Biol Rev. 2015;90:89–111.
   PubMed Web of Science ®Google Scholar
• Beukeboom LW, Perrin N. The evolution of sex determination. USA: Oxford University Press; 2014.
   Google Scholar
• Saurav GK, Daimei G, Rana VS, et al. Detection and localization of Wolbachia in Thrips palmi Karny (Thysanoptera: Thripidae). Indian J Microbiol. 2016;56:167–171.
   PubMed Web of Science ®Google Scholar